CF832338

Overview
NameCF832338
Unique NameCF832338
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP364_ARATH (Pentatricopeptide repeat-containing protein At5g04780 OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.291e-14
Identity = 43/106 (40.57%), Postives = 54/106 (50.94%), Query Frame = -2
Query:  516 LEGFYEKMKAVGFAGS-EYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830
            L+    K +  G+  S E+   D     K E+   HSE LA+ FGL+      P+ + KNL  C  CH  +K  S   RR I VRD   FHHF DG CSCGD  +W
Sbjct:  532 LDNLVIKFRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAASMATRRFIIVRDVNRFHHFSDGHCSCGD--FW 635          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PPR71_ARATH (Pentatricopeptide repeat-containing protein At1g34160 OS=Arabidopsis thaliana GN=PCMP-H68 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.755e-14
Identity = 48/112 (42.86%), Postives = 58/112 (51.79%), Query Frame = -2
Query:  516 YEKMKAVGFAGSE--YVSM------DKSEASKAEIFCGHSEMLAVAFGLI---NTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 818
            YEK+  + F   E  YV+       D  E  K    C HSE LAVA+GL+         P+ V  NL  C  CH   K ISKI +R+I VRD   FH FKDG+CSC D  +W
Sbjct:  472 YEKIDEIRFKIREDGYVAQTGLVLHDIGEEEKENALCYHSEKLAVAYGLMMMDGADEESPVRVINNLRICGDCHVVFKHISKIYKREIIVRDRVRFHRFKDGSCSCRD--FW 581          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP363_ARATH (Pentatricopeptide repeat-containing protein At5g03800 OS=Arabidopsis thaliana GN=EMB175 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.427e-13
Identity = 36/87 (41.38%), Postives = 52/87 (59.77%), Query Frame = -2
Query:  528 SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINT-APGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGD 785
            +EYV  +  E  K      HS  LAV +G++++   G P+ V KN+  C  CH   K+IS +V+R+I +RD+  FHHF +G CSC D
Sbjct:  808 TEYVLQEVDEFMKKSFLFHHSAKLAVTYGILSSNTRGKPVRVMKNVMLCGDCHEFFKYISVVVKREIVLRDSSGFHHFVNGKCSCRD 894          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP377_ARATH (Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.864e-13
Identity = 37/84 (44.05%), Postives = 49/84 (58.33%), Query Frame = -2
Query:  528 VSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMP-IWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGD 776
            V +D  +  K +    HSE LA+A+GL+        I + KNL  C  CH+ +K IS IV+RD+ +RD   FHHF  G CSCGD
Sbjct:  737 VLLDMDDEEKDKRLWVHSERLALAYGLVRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCGD 820          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PPR52_ARATH (Pentatricopeptide repeat-containing protein At1g19720 OS=Arabidopsis thaliana GN=DYW7 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.152e-13
Identity = 46/109 (42.20%), Postives = 57/109 (52.29%), Query Frame = -2
Query:  516 VLEGFYEKMKAVGFAGSEYVSMDKSEASKAEIFCG-HSEMLAVAFGLINT--APGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 833
            VL    EKM  +     +Y      E    E  CG HSE  A+AFGLI++  A    I + KNL  C  CH+T K++SK    DI + DT   HHFK+G CSC D  YW
Sbjct:  788 VLYPLVEKMSRLDNRSDQYNGELWIEEEGREETCGIHSEKFAMAFGLISSSGASKTTIRILKNLRMCRDCHDTAKYVSKRYGCDILLEDTRCLHHFKNGDCSCKD--YW 894          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP417_ARATH (Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.152e-13
Identity = 39/106 (36.79%), Postives = 57/106 (53.77%), Query Frame = -2
Query:  516 LEGFYEKMKAVGFAGS-EYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830
            LE   E++  +G+      V  D S+ +K  I   H+E LA+AF L+ T     I + KNL  C  CH  ++  S++  + I +RD   FHHF+ G CSCGD  +W
Sbjct:  554 LEELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLTTNRDSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRSGDCSCGD--FW 657          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP346_ARATH (Pentatricopeptide repeat-containing protein At4g32450, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H63 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.152e-13
Identity = 40/106 (37.74%), Postives = 56/106 (52.83%), Query Frame = -2
Query:  516 LEGFYEKMKAVGFAGSEYVSM-DKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830
            L+   E M  +G+     +++ D  + SK E    H+E  A     ++T     I V KNL  C  CHN +K +SKIV R++  RD + FHH KDG CSC +  YW
Sbjct:  434 LKSLKEHMIEIGYVPLSKLALHDVDQESKDENLFNHNERFAFISTFLDTPARSLIRVMKNLRVCADCHNALKLMSKIVGRELISRDAKRFHHMKDGVCSCRE--YW 537          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP122_ARATH (Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.152e-13
Identity = 38/84 (45.24%), Postives = 46/84 (54.76%), Query Frame = -2
Query:  516 DKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 767
            D  E  K +    HSE LA+AF L   + G  I + KNL  C  CH  +K  SK+   +I VRD   FH FKDG+CSC D  YW
Sbjct:  562 DVEEEEKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRICRDCHAVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRD--YW 643          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP311_ARATH (Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.061e-12
Identity = 44/114 (38.60%), Postives = 58/114 (50.88%), Query Frame = -2
Query:  516 LEGFYEKMKAVGFA---GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMP------IWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830
            L+    K+K  G+    GS  V +D  E  K ++   HSE LA+ FGL+N            I + KNL  C  CH   K +SK+  R+I VRD   FH +K+G CSC D  YW
Sbjct:  613 LDEVVSKLKLAGYVPDCGS--VLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRD--YW 722          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP147_ARATH (Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.591e-12
Identity = 39/106 (36.79%), Postives = 53/106 (50.00%), Query Frame = -2
Query:  516 LEGFYEKMKAVGFAG-SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830
            L     ++  +G+   + +V  D       +    HSE LA+AFGL+       I + KNL  C  CH   K  SK+  R I +RD   +HHF+DG CSCGD  YW
Sbjct:  527 LNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGD--YW 630          
The following BLAST results are available for this feature:
BLAST of CF832338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
PP364_ARATH1.291e-1440.57Pentatricopeptide repeat-containing protein At5g04... [more]
PPR71_ARATH3.755e-1442.86Pentatricopeptide repeat-containing protein At1g34... [more]
PP363_ARATH1.427e-1341.38Pentatricopeptide repeat-containing protein At5g03... [more]
PP377_ARATH1.864e-1344.05Putative pentatricopeptide repeat-containing prote... [more]
PPR52_ARATH4.152e-1342.20Pentatricopeptide repeat-containing protein At1g19... [more]
PP417_ARATH4.152e-1336.79Pentatricopeptide repeat-containing protein At5g44... [more]
PP346_ARATH4.152e-1337.74Pentatricopeptide repeat-containing protein At4g32... [more]
PP122_ARATH4.152e-1345.24Pentatricopeptide repeat-containing protein At1g74... [more]
PP311_ARATH2.061e-1238.60Pentatricopeptide repeat-containing protein At4g14... [more]
PP147_ARATH4.591e-1236.79Pentatricopeptide repeat-containing protein At2g03... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01L08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832338 ID=CF832338; Name=CF832338; organism=Citrus sinensis; type=EST; length=834bp
TTTTTTTTTTTTTTTTTGAAATCAATCTACACAATTTTCATTTCACCTTT
AAGGTAAATTCTACTATATTTCACATGAAATATACATAAATAAAAAGAAT
AGCACTTTACCTACCTCGCACAACAATCTTGTTTAAATTATATTTTCCCT
TTTGGCAGCAAGAATACAGTGACGCTATATCCATTGGGTGCATACATAAA
AGTACTACACGATACCTTGATGTCAGTTCCATAATCAAAGGGTGTGCAGT
AAATTGAACAGCAAACCAGCTTCTTTCCTTTTCAAGACTGCTGGTTAAAG
CGAGCTGAATAACTGTTCATCAGTGTTTCAAGCTCTTGGAGTTGGGACTA
CGATGTTCTCTGCTTTGCCTGGAATCCTACAATTTAGTTCAAGGGGCCAG
CCACTGCCCAAGTGTACAAGTTTCACCACAACCCTGAAACTCTCATCCTG
TATTTTTGTACAAGTTATAGAATGCTTAAAAAAAATCTTTAGCTCTCTGA
CCTGTCTAGTCTTCCCCAGTAACCCTCATCACCACAAGAGCAGGTTCCAT
CCTTGAAGTGGTGAAAATGTTCAGTATCCCTAACAAAAATGTCTCTGCGT
ACAATCTTGGAGATGAACTTGACAGTGTTGTGACAACTTGGGCATGTATA
GAGATTCTTTGTAACCCAAATAGGCATCCCCGGGGCAGTATTTATGAGGC
CAAATGCCACAGCCAACATCTCACTGTGACCACAAAAGATCTCAGCTTTT
GAAGCTTCACTTTTGTCCATGGACACATATTCTGAACCAGCAAAACCAAC
TGCTTTCATTTTCTCATAAAATCCCTCCAAAACT
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