CF832338
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP364_ARATH (Pentatricopeptide repeat-containing protein At5g04780 OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 1.291e-14 Identity = 43/106 (40.57%), Postives = 54/106 (50.94%), Query Frame = -2 Query: 516 LEGFYEKMKAVGFAGS-EYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830 L+ K + G+ S E+ D K E+ HSE LA+ FGL+ P+ + KNL C CH +K S RR I VRD FHHF DG CSCGD +W Sbjct: 532 LDNLVIKFRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAASMATRRFIIVRDVNRFHHFSDGHCSCGD--FW 635
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PPR71_ARATH (Pentatricopeptide repeat-containing protein At1g34160 OS=Arabidopsis thaliana GN=PCMP-H68 PE=2 SV=2) HSP 1 Score: 78.9518 bits (193), Expect = 3.755e-14 Identity = 48/112 (42.86%), Postives = 58/112 (51.79%), Query Frame = -2 Query: 516 YEKMKAVGFAGSE--YVSM------DKSEASKAEIFCGHSEMLAVAFGLI---NTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 818 YEK+ + F E YV+ D E K C HSE LAVA+GL+ P+ V NL C CH K ISKI +R+I VRD FH FKDG+CSC D +W Sbjct: 472 YEKIDEIRFKIREDGYVAQTGLVLHDIGEEEKENALCYHSEKLAVAYGLMMMDGADEESPVRVINNLRICGDCHVVFKHISKIYKREIIVRDRVRFHRFKDGSCSCRD--FW 581
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP363_ARATH (Pentatricopeptide repeat-containing protein At5g03800 OS=Arabidopsis thaliana GN=EMB175 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.427e-13 Identity = 36/87 (41.38%), Postives = 52/87 (59.77%), Query Frame = -2 Query: 528 SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINT-APGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGD 785 +EYV + E K HS LAV +G++++ G P+ V KN+ C CH K+IS +V+R+I +RD+ FHHF +G CSC D Sbjct: 808 TEYVLQEVDEFMKKSFLFHHSAKLAVTYGILSSNTRGKPVRVMKNVMLCGDCHEFFKYISVVVKREIVLRDSSGFHHFVNGKCSCRD 894
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP377_ARATH (Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.864e-13 Identity = 37/84 (44.05%), Postives = 49/84 (58.33%), Query Frame = -2 Query: 528 VSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMP-IWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGD 776 V +D + K + HSE LA+A+GL+ I + KNL C CH+ +K IS IV+RD+ +RD FHHF G CSCGD Sbjct: 737 VLLDMDDEEKDKRLWVHSERLALAYGLVRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCGD 820
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PPR52_ARATH (Pentatricopeptide repeat-containing protein At1g19720 OS=Arabidopsis thaliana GN=DYW7 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.152e-13 Identity = 46/109 (42.20%), Postives = 57/109 (52.29%), Query Frame = -2 Query: 516 VLEGFYEKMKAVGFAGSEYVSMDKSEASKAEIFCG-HSEMLAVAFGLINT--APGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 833 VL EKM + +Y E E CG HSE A+AFGLI++ A I + KNL C CH+T K++SK DI + DT HHFK+G CSC D YW Sbjct: 788 VLYPLVEKMSRLDNRSDQYNGELWIEEEGREETCGIHSEKFAMAFGLISSSGASKTTIRILKNLRMCRDCHDTAKYVSKRYGCDILLEDTRCLHHFKNGDCSCKD--YW 894
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP417_ARATH (Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.152e-13 Identity = 39/106 (36.79%), Postives = 57/106 (53.77%), Query Frame = -2 Query: 516 LEGFYEKMKAVGFAGS-EYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830 LE E++ +G+ V D S+ +K I H+E LA+AF L+ T I + KNL C CH ++ S++ + I +RD FHHF+ G CSCGD +W Sbjct: 554 LEELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLTTNRDSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRSGDCSCGD--FW 657
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP346_ARATH (Pentatricopeptide repeat-containing protein At4g32450, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H63 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.152e-13 Identity = 40/106 (37.74%), Postives = 56/106 (52.83%), Query Frame = -2 Query: 516 LEGFYEKMKAVGFAGSEYVSM-DKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830 L+ E M +G+ +++ D + SK E H+E A ++T I V KNL C CHN +K +SKIV R++ RD + FHH KDG CSC + YW Sbjct: 434 LKSLKEHMIEIGYVPLSKLALHDVDQESKDENLFNHNERFAFISTFLDTPARSLIRVMKNLRVCADCHNALKLMSKIVGRELISRDAKRFHHMKDGVCSCRE--YW 537
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP122_ARATH (Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.152e-13 Identity = 38/84 (45.24%), Postives = 46/84 (54.76%), Query Frame = -2 Query: 516 DKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 767 D E K + HSE LA+AF L + G I + KNL C CH +K SK+ +I VRD FH FKDG+CSC D YW Sbjct: 562 DVEEEEKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRICRDCHAVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRD--YW 643
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP311_ARATH (Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.061e-12 Identity = 44/114 (38.60%), Postives = 58/114 (50.88%), Query Frame = -2 Query: 516 LEGFYEKMKAVGFA---GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMP------IWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830 L+ K+K G+ GS V +D E K ++ HSE LA+ FGL+N I + KNL C CH K +SK+ R+I VRD FH +K+G CSC D YW Sbjct: 613 LDEVVSKLKLAGYVPDCGS--VLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRD--YW 722
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP147_ARATH (Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.591e-12 Identity = 39/106 (36.79%), Postives = 53/106 (50.00%), Query Frame = -2 Query: 516 LEGFYEKMKAVGFAG-SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830 L ++ +G+ + +V D + HSE LA+AFGL+ I + KNL C CH K SK+ R I +RD +HHF+DG CSCGD YW Sbjct: 527 LNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGD--YW 630 The following BLAST results are available for this feature:
BLAST of CF832338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832338 ID=CF832338; Name=CF832338; organism=Citrus sinensis; type=EST; length=834bpback to top |