CF832338

Overview
NameCF832338
Unique NameCF832338
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP297_ARATH (Pentatricopeptide repeat-containing protein At4g01030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H65 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.996e-12
Identity = 34/96 (35.42%), Postives = 53/96 (55.21%), Query Frame = -2
Query:  528 KMKAVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGD 812
            +MK  G+   +  +  D S++ K ++  GH+E LA+ +GLI      PI V KN   C   H   K++S +  R+I +++    HHF+DG CSC D
Sbjct:  671 EMKKSGYVPDTSCIHQDISDSEKEKLLMGHTEKLAMTYGLIKKKGLAPIRVVKNTNICSDSHTVAKYMSVLRNREIVLQEGARVHHFRDGKCSCND 766          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP350_ARATH (Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H27 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.976e-11
Identity = 32/71 (45.07%), Postives = 43/71 (60.56%), Query Frame = -2
Query:  516 HSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 728
            HS  LA  FGLI+T  G  + V  N   C  CH  ++  S++ RR+I V D++ FHHF +G CSCG+  YW
Sbjct:  736 HSVRLATCFGLISTETGRRVTVRNNTRICRKCHEFLEKASRLTRREIVVGDSKIFHHFSNGRCSCGN--YW 804          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP232_ARATH (Putative pentatricopeptide repeat-containing protein At3g15130 OS=Arabidopsis thaliana GN=PCMP-H86 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.076e-11
Identity = 39/94 (41.49%), Postives = 47/94 (50.00%), Query Frame = -2
Query:  516 GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLIN---TAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 788
            G ++   D  + SK E    HSE LA+   L        G  I V KNL  C  CH  +K +SKI +    VRD   FH F+DG CSCGD  YW
Sbjct:  598 GLKHELHDIDDESKEENLRAHSEKLAIGLALATGGLNQKGKTIRVFKNLRVCVDCHEFIKGLSKITKIAYVVRDAVRFHSFEDGCCSCGD--YW 689          
The following BLAST results are available for this feature:
BLAST of CF832338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
PP297_ARATH5.996e-1235.42Pentatricopeptide repeat-containing protein At4g01... [more]
PP350_ARATH2.976e-1145.07Pentatricopeptide repeat-containing protein At4g35... [more]
PP232_ARATH5.076e-1141.49Putative pentatricopeptide repeat-containing prote... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01L08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832338 ID=CF832338; Name=CF832338; organism=Citrus sinensis; type=EST; length=834bp
TTTTTTTTTTTTTTTTTGAAATCAATCTACACAATTTTCATTTCACCTTT
AAGGTAAATTCTACTATATTTCACATGAAATATACATAAATAAAAAGAAT
AGCACTTTACCTACCTCGCACAACAATCTTGTTTAAATTATATTTTCCCT
TTTGGCAGCAAGAATACAGTGACGCTATATCCATTGGGTGCATACATAAA
AGTACTACACGATACCTTGATGTCAGTTCCATAATCAAAGGGTGTGCAGT
AAATTGAACAGCAAACCAGCTTCTTTCCTTTTCAAGACTGCTGGTTAAAG
CGAGCTGAATAACTGTTCATCAGTGTTTCAAGCTCTTGGAGTTGGGACTA
CGATGTTCTCTGCTTTGCCTGGAATCCTACAATTTAGTTCAAGGGGCCAG
CCACTGCCCAAGTGTACAAGTTTCACCACAACCCTGAAACTCTCATCCTG
TATTTTTGTACAAGTTATAGAATGCTTAAAAAAAATCTTTAGCTCTCTGA
CCTGTCTAGTCTTCCCCAGTAACCCTCATCACCACAAGAGCAGGTTCCAT
CCTTGAAGTGGTGAAAATGTTCAGTATCCCTAACAAAAATGTCTCTGCGT
ACAATCTTGGAGATGAACTTGACAGTGTTGTGACAACTTGGGCATGTATA
GAGATTCTTTGTAACCCAAATAGGCATCCCCGGGGCAGTATTTATGAGGC
CAAATGCCACAGCCAACATCTCACTGTGACCACAAAAGATCTCAGCTTTT
GAAGCTTCACTTTTGTCCATGGACACATATTCTGAACCAGCAAAACCAAC
TGCTTTCATTTTCTCATAAAATCCCTCCAAAACT
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