CF832481

Overview
NameCF832481
Unique NameCF832481
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length930
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832481 vs. ExPASy Swiss-Prot
Match: GPN1_CAEEL (GPN-loop GTPase 1 homolog OS=Caenorhabditis elegans GN=gop-2 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.085e-20
Identity = 56/173 (32.37%), Postives = 90/173 (52.02%), Query Frame = 3
Query:  135 LVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 653
            LV+G AGSGK+T+   L       +   +++NLDPA     YPV +DIR+ +  ++VM+E G+GPNG ++ C+  +    D                + D PGQIE FT         D L S +  V  +Y++DS   T+ T F+S  + + S + + +LP + + +K D+V
Sbjct:   34 LVLGMAGSGKTTFVQRLTAFLHARKTPPYVINLDPAVSKVPYPVNVDIRDTVKYKEVMKEFGMGPNGAIMTCLNLMCTRFDKVIELINKRSSDFSVCLLDTPGQIEAFTWSASGSIITDSLASSHPTV-VMYIVDSARATNPTTFMSNMLYACSILYRTKLPFIVVFNKADIV 205          
BLAST of CF832481 vs. ExPASy Swiss-Prot
Match: GPN1_HUMAN (GPN-loop GTPase 1 OS=Homo sapiens GN=GPN1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.416e-20
Identity = 57/208 (27.40%), Postives = 103/208 (49.52%), Query Frame = 3
Query:  135 LVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIE---------DYLNPESQFLLSELNQHMA 731
            LV+G AGSGK+T+   L  H        +++NLDPA     +P  +DIR+ +  ++VM++ GLGPNGG++  +       D                + D PGQIE+FT        +    + +F    +Y++D+   T+   F+S  + + S + + +LP + +++K D++ +   +E         D LN E+ + +S L + M+
Sbjct:   23 LVLGMAGSGKTTFVQRLTGHLHAQGTPPYVINLDPAVHEVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNMSKYVLIDTPGQIEVFTW-SASGTIITEALASSFPTVVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTY-VSNLTRSMS 228          
BLAST of CF832481 vs. ExPASy Swiss-Prot
Match: GPN1_MOUSE (GPN-loop GTPase 1 OS=Mus musculus GN=Gpn1 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.416e-20
Identity = 57/208 (27.40%), Postives = 103/208 (49.52%), Query Frame = 3
Query:  135 LVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIE---------DYLNPESQFLLSELNQHMA 731
            LV+G AGSGK+T+   L  H        +++NLDPA     +P  +DIR+ +  ++VM++ GLGPNGG++  +       D                + D PGQIE+FT        +    + +F    +Y++D+   T+   F+S  + + S + + +LP + +++K D++ +   +E         D LN E+ + +S L + M+
Sbjct:   23 LVLGMAGSGKTTFVQRLTGHLHNKGCPPYVINLDPAVHEVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNTFRYVLIDTPGQIEVFTW-SASGTIITEALASSFPTVVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTY-VSNLTRSMS 228          
BLAST of CF832481 vs. ExPASy Swiss-Prot
Match: GPN1_DICDI (GPN-loop GTPase 1 homolog OS=Dictyostelium discoideum GN=xab1 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.030e-20
Identity = 61/216 (28.24%), Postives = 106/216 (49.07%), Query Frame = 3
Query:  135 LVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY 782
            +V+G AGSGK+T    +  H    +   +I+NLDPA     Y   +DIR+ ++ ++VM++  LGPNGG++  +       D                + D PGQIE+FT        +  L + +F    VY++D+    D T F+S  + + S M + +LP V   +K+D +TN +  E++++    F  +  N         L +SL  +++E+
Sbjct:   38 IVLGMAGSGKTTLLQRIRAHLYENKIPGYIINLDPAVSKLPYTPNIDIRDTVNYKEVMKQFNLGPNGGIVTSLNLFSTKFDKVLEIVEKRSSSLDYIILDTPGQIEVFTW-SASGTIITELMASSFPTVLVYVVDTPRTVDPTTFMSNMLYACSIMYKSKLPMVVAFNKID-ITNHRFAEEWMSDFDSFQDALTND--PTYMGNLTRSLSLVLEEF 249          
BLAST of CF832481 vs. ExPASy Swiss-Prot
Match: GPN1_BOVIN (GPN-loop GTPase 1 OS=Bos taurus GN=GPN1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.181e-20
Identity = 56/208 (26.92%), Postives = 104/208 (50.00%), Query Frame = 3
Query:  135 LVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIE---------DYLNPESQFLLSELNQHMA 731
            LV+G AGSGK+T+   L  +  +     +++NLDPA     +P  +DIR+ +  ++VM++ GLGPNGG++  +       D                + D PGQIE+FT        +    + +F    +Y++D+   T+   F+S  + + S + + +LP + +++K D++ +   +E         D LN E+ + +S L + M+
Sbjct:   23 LVLGMAGSGKTTFVQRLTGYLHSQGCPPYVINLDPAVHEVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNMSKYVLIDTPGQIEVFTW-SASGTIITEALASSFPTIVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTY-VSNLTRSMS 228          
BLAST of CF832481 vs. ExPASy Swiss-Prot
Match: NPA3_SCHPO (GTPase npa3 OS=Schizosaccharomyces pombe GN=npa3 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.261e-18
Identity = 52/174 (29.89%), Postives = 89/174 (51.15%), Query Frame = 3
Query:  129 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 650
            A +V+G AGSGK+T+   L  H  +  +  +I+NLDPA  N  Y   +DIR+ I+ ++VM++  LGPNGG++  +       D                + D PGQIE+F          D L S ++  C  Y++D+   T  + ++S  + + S + + +LP + + +K D+
Sbjct:   10 AIIVVGMAGSGKTTFMQQLNAHLHSKNKPPYILNLDPAVRNLPYEANIDIRDTINYKEVMKQYNLGPNGGIMTSLNLFVTKFDQVLKILEKRAPTVDHILIDTPGQIEIFQWSASGSIICDTLAS-SWPTCIAYVVDTPRATSTSTWMSSMLYACSMLYKAKLPLIIVYNKCDV 182          
BLAST of CF832481 vs. ExPASy Swiss-Prot
Match: NPA3_YEAST (GTPase NPA3 OS=Saccharomyces cerevisiae GN=NPA3 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.809e-15
Identity = 48/172 (27.91%), Postives = 79/172 (45.93%), Query Frame = 3
Query:  135 LVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 650
            + IG AGSGK+T+   L  H    +   +++NLDPA     Y   +DIR+ I  + VME   LGPNG ++  +      +D                + D PGQIE F          +   S +F     Y++D+   +  T F+S  + + S + + +LP + + +K D+
Sbjct:    7 ICIGMAGSGKTTFMQRLNSHLRAEKTPPYVINLDPAVLRVPYGANIDIRDSIKYKKVMENYQLGPNGAIVTSLNLFSTKIDQVIRLVEQKKDKFQNCIIDTPGQIECFVWSASGAIITESFAS-SFPTVIAYIVDTPRNSSPTTFMSNMLYACSILYKTKLPMIVVFNKTDV 177          
The following BLAST results are available for this feature:
BLAST of CF832481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
GPN1_CAEEL1.085e-2032.37GPN-loop GTPase 1 homolog OS=Caenorhabditis elegan... [more]
GPN1_HUMAN1.416e-2027.40GPN-loop GTPase 1 OS=Homo sapiens GN=GPN1 PE=1 SV=... [more]
GPN1_MOUSE2.416e-2027.40GPN-loop GTPase 1 OS=Mus musculus GN=Gpn1 PE=1 SV=... [more]
GPN1_DICDI7.030e-2028.24GPN-loop GTPase 1 homolog OS=Dictyostelium discoid... [more]
GPN1_BOVIN9.181e-2026.92GPN-loop GTPase 1 OS=Bos taurus GN=GPN1 PE=2 SV=1[more]
NPA3_SCHPO2.261e-1829.89GTPase npa3 OS=Schizosaccharomyces pombe GN=npa3 P... [more]
NPA3_YEAST6.809e-1527.91GTPase NPA3 OS=Saccharomyces cerevisiae GN=NPA3 PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01O20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01O20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832481 ID=CF832481; Name=CF832481; organism=Citrus sinensis; type=EST; length=930bp
CCCTCGCGCTGGCGACAGCCTACCGGCCACGTAACGCCGGCCCCCGCCTG
TACCACGAGCTGTTTGCCACCAGTTCCCTCTCACCATTTTGAATTACTGC
AGCAACTTGAGAAGCAGTAATGGGCTACGCACAGCTCGTTATAGGCCCCG
CGGGCTCTGGAAAGTCAACTTACTGCTCTAGTTTGTACCGACACTGTGAA
ACTGTTCGGCGGACAATGCATATTGTGAACCTGGATCCTGCTGCAGAAAA
TTTTGACTATCCTGTGGCCATGGATATTAGGGAACTTATTTCTCTCGAAG
ACGTTATGGAGGAACTTGGATTGGGTCCCAATGGTGGTCTAATCTATTGC
ATGGAACATTTAGAAGATAATCTGGATGATTGGCTGGCAGAGGAGTTGGA
TAACTACTTGGATGATGACTATCTTGTTTTTGATTGCCCAGGCCAGATTG
AACTTTTTACGCATGTGCCAGTTCTTCGGAACTTTGTGGACCATTTGAAG
AGTAGAAATTTTAATGTCTGCGCTGTGTACTTGCTCGATTCACAGTTCAT
CACAGATGTCACCAAGTTTATAAGTGGGTGCATGGCATCTCTTTCTGCAA
TGGTCCAGCTCGAATTACCCCATGTTAATATCCTCTCTAAAATGGACCTT
GTGACAAACAAAAAGGAAATTGAAGACTACTTGAATCCAGAATCACAATT
TCTATTGTCAGAGTTGAATCAACACATGGCTCCTCAGTTTGCAAAGCTAA
ATAAGTCTCTGATTGAGCTGGTGGACGAGTATAGCATGGTCAGTTTTATG
CCTCTTGACTTGAGGAAGGAGAGCAGTATAAGGTATGTGTTGTCTCAAAT
TGACAACTGCATCCAGTGGGGAGAAGACGCGGATTTGAAAATTAAGGATT
TTGATCCAGAAGATGACGATGAATAGCCTC
back to top