CF835137

Overview
NameCF835137
Unique NameCF835137
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11430 contig Csv1_Contig11430:316..1010. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835137 vs. ExPASy Swiss-Prot
Match: C519B_DICDI (Probable cytochrome P450 519B1 OS=Dictyostelium discoideum GN=cyp519b1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.512e-12
Identity = 52/198 (26.26%), Postives = 93/198 (46.97%), Query Frame = 2
Query:   56 LVFTLVWVMALSFVSRGRHKQL--PPGPRPYPVIGNLLELGAKPHKSLAKLAKIHGPIMSLRLGQVTTVVVSSPSMAKAILQNHDLSFCDRMVPEAILSLPFPHHEFSLAWLPVSTMWKNLRKISNMHIFTSQKLDANQELRRKKIKDLLAHVEDNCRAGKAIDVGQAAFNTSLNLLSNTIFSIDLVNPNEREFKDTV 643
            L F L W++   F+ + R      PP P   P+IG+L +L   PH+SL +LAK++G + SL +G   TVV++  S  K +      +F +R  P++I  +      F          W+  RK+ +  + T  K+     L  K+ ++L+  + +     +     +     SLN++ + +FS + +  NE   K T+
Sbjct:    8 LYFILFWIV-FDFIRKNRRISFNDPPSPWALPIIGHLHKLSLNPHRSLTELAKVYGGVYSLHIGDSKTVVITDVSAFKDVTIKQFKNFANRPQPKSIRVIT----NFKGLAFADYDQWQKTRKLVSSAL-TKTKIKTFNNLIEKQTENLIESMNEFSNKNELFHPRKYLTKYSLNIILSMLFSKE-IGKNESINKGTM 198          
BLAST of CF835137 vs. ExPASy Swiss-Prot
Match: TCMO_HELTU (Trans-cinnamate 4-monooxygenase OS=Helianthus tuberosus GN=CYP73A1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.811e-12
Identity = 41/117 (35.04%), Postives = 63/117 (53.85%), Query Frame = 2
Query:  101 RGRHKQLPPGPRPYPVIGNLLELGAK-PHKSLAKLAKIHGPIMSLRLGQVTTVVVSSPSMAKAILQNHDLSFCDRMVPEAILSLPFPHHEFSLAWLPVSTMWKNLRKISNMHIFTSQ 448
            RG+  +LPPGP P P+ GN L++G    H++L  LAK  G I+ LR+GQ   VVVSSP +AK +L    + F  R     ++   F      + +      W+ +R+I  +  FT++
Sbjct:   27 RGKKFKLPPGPIPVPIFGNWLQVGDDLNHRNLTDLAKRFGEILLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSR--TRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNK 141          
BLAST of CF835137 vs. ExPASy Swiss-Prot
Match: TCMO_CATRO (Trans-cinnamate 4-monooxygenase OS=Catharanthus roseus GN=CYP73A4 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.281e-11
Identity = 43/131 (32.82%), Postives = 68/131 (51.91%), Query Frame = 2
Query:   59 VFTLVWVMALSFVSRGRHKQLPPGPRPYPVIGNLLELGAK-PHKSLAKLAKIHGPIMSLRLGQVTTVVVSSPSMAKAILQNHDLSFCDRMVPEAILSLPFPHHEFSLAWLPVSTMWKNLRKISNMHIFTSQ 448
            +F  + V ++    RG+  +LPPGP P PV GN L++G    H++L+  AK  G I  LR+GQ   VVVSSP +AK +L    + F  R     ++   F      + +      W+ +R+I  +  FT++
Sbjct:   13 LFAAIIVASIVSKLRGKKFKLPPGPIPVPVFGNWLQVGDDLNHRNLSDYAKKFGEIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSR--TRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNK 141          
BLAST of CF835137 vs. ExPASy Swiss-Prot
Match: TCMO_ARATH (Trans-cinnamate 4-monooxygenase OS=Arabidopsis thaliana GN=CYP73A5 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.281e-11
Identity = 43/138 (31.16%), Postives = 69/138 (50.00%), Query Frame = 2
Query:   59 VFTLVWVMALSFVSRGRHKQLPPGPRPYPVIGNLLELGAK-PHKSLAKLAKIHGPIMSLRLGQVTTVVVSSPSMAKAILQNHDLSFCDRMVPEAILSLPFPHHEFSLAWLPVSTMWKNLRKISNMHIFTSQKLDANQE 469
            VF  V +  +    RG+  +LPPGP P P+ GN L++G    H++L   AK  G +  LR+GQ   VVVSSP + K +L    + F  R     ++   F      + +      W+ +R+I  +  FT++ +  N+E
Sbjct:   13 VFVAVILATVISKLRGKKLKLPPGPIPIPIFGNWLQVGDDLNHRNLVDYAKKFGDLFLLRMGQRNLVVVSSPDLTKEVLLTQGVEFGSR--TRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQNRE 148          
BLAST of CF835137 vs. ExPASy Swiss-Prot
Match: C516B_DICDI (Probable cytochrome P450 516B1 OS=Dictyostelium discoideum GN=cyp516b1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.855e-11
Identity = 39/144 (27.08%), Postives = 75/144 (52.08%), Query Frame = 2
Query:   56 LVFTLVWVMALSFVSRGRHKQLPPGPRPYPVIGNLLELGAKPHKSLAKLAKIHGPIMSLRLGQVTTVVVSSPSMAKAILQNHDLSFCDRMVPEAILSLPFPHHEFSLAWLPVSTMWKNLRKISNMHIFTSQKLDANQELRRKKI 487
            L+ +L+  +A     + R   +PPGP P P+IGNL +LG  P+KSL   +  +G + ++ LG V TV++S P++ + I+  ++ S  DR + ++ L +    +          + W   RKI +  +  ++K +    + ++ I
Sbjct:    3 LILSLIIFLAYVAFHKKRTNGMPPGPFPLPIIGNLHQLGKSPYKSLKSFSDKYGGLTTIFLGSVPTVLISEPNILREIIIKNNDSIIDRYISDSGLIIGGERN----LLFSKGSFWIKYRKIFSSAMTNARKFNIASRIEQQAI 142          
BLAST of CF835137 vs. ExPASy Swiss-Prot
Match: TCMO_RUTGR (Trans-cinnamate 4-monooxygenase OS=Ruta graveolens GN=CYP73A2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 41/117 (35.04%), Postives = 63/117 (53.85%), Query Frame = 2
Query:  101 RGRHKQLPPGPRPYPVIGNLLELGAKPH-KSLAKLAKIHGPIMSLRLGQVTTVVVSSPSMAKAILQNHDLSFCDRMVPEAILSLPFPHHEFSLAWLPVSTMWKNLRKISNMHIFTSQ 448
            RG+  +LPPGP  +PV GN L++G   + + LA L+K  G +  LR+GQ   VVVSSP MAK +L    + F  R     ++   F      + +   S  W+ +R+I  +  FT++
Sbjct:   27 RGKRFKLPPGPLGFPVFGNWLQVGDDLNQRKLANLSKKFGDVYLLRMGQRNLVVVSSPEMAKEVLHTQGVEFGSR--TRNVVFDIFTGKGQDMVFTVYSEHWRKMRRIMTVPFFTNK 141          
BLAST of CF835137 vs. ExPASy Swiss-Prot
Match: C82A4_SOYBN (Cytochrome P450 82A4 OS=Glycine max GN=CYP82A4 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 42/145 (28.97%), Postives = 79/145 (54.48%), Query Frame = 2
Query:  104 GRHKQLPPGPRPYPVIGNL-LELGAK-PHKSLAKLAKIHGPIMSLRLGQVTTVVVSSPSMAKAILQNHDLSFCDRMVPEAILSLPFPHHEFSLAWLPVSTMWKNLRKISNMHIFTSQKLDANQELRRKKIKDLLAHVEDNCRAGK 532
            G  K+ P     +P+ G+L L +G+K PHK+L  LA+ HGP+ +++LG    +VVS   MA+     +D++   R  P+ +++    ++   L   P    W+ LRKI    I +S +++  Q++R  ++++ +  + D  R+ K
Sbjct:   35 GSSKEAPTVGGAWPIFGHLPLLIGSKSPHKALGALAEKHGPLFTIKLGAKKALVVSDWEMARECFTTNDVAVSAR--PKLLVAELMCYNNAMLLVAPYGPYWRELRKIIVTEILSSSRVEQLQDVRVSEVQNSIVELYDVWRSQK 177          
BLAST of CF835137 vs. ExPASy Swiss-Prot
Match: C519C_DICDI (Probable cytochrome P450 519C1 OS=Dictyostelium discoideum GN=cyp519c1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 46/185 (24.86%), Postives = 90/185 (48.65%), Query Frame = 2
Query:   56 LVFTLVWVMALSFVSRGRHKQ--LPPGPRPYPVIGNLLELGAKPHKSLAKLAKIHGPIMSLRLGQVTTVVVSSPSMAKAILQNHDLSFCDRMVPEAILSLPFPHHEFSLAWLPVSTMWKNLRKISNMHIFTSQKLDANQELRRKKIKDLLAHVEDNCRAGKAIDVGQAAFNTSLNLLSNTIFSID 604
            + + LV  +   F+ + + K+  +P      P+IG+L +LG  PH++L KL + +G I SL LG + TV+V+ PS+ K I+     +F DR  P       F     +L ++  +  W  +RKI +  I  ++ +   +E+   + K L+  +  + +  +     +     S++++   +F  D
Sbjct:    7 IFYFLVCFLIFDFIKKNKVKKYDVPTLSYALPIIGHLYKLGVNPHRNLTKLVEKNGGIFSLWLGDIKTVIVTDPSINKEIMVKQFTNFSDR--PRLKSFESFTGGGVNLIFIDYNEKWPVIRKIVSSSITKTKIISNYKEVIENQTKILINSMRTHSKINEPFKSKKYFGKFSISIVLGIMFKQD 189          
The following BLAST results are available for this feature:
BLAST of CF835137 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
C519B_DICDI7.512e-1226.26Probable cytochrome P450 519B1 OS=Dictyostelium di... [more]
TCMO_HELTU9.811e-1235.04Trans-cinnamate 4-monooxygenase OS=Helianthus tube... [more]
TCMO_CATRO1.281e-1132.82Trans-cinnamate 4-monooxygenase OS=Catharanthus ro... [more]
TCMO_ARATH1.281e-1131.16Trans-cinnamate 4-monooxygenase OS=Arabidopsis tha... [more]
C516B_DICDI2.855e-1127.08Probable cytochrome P450 516B1 OS=Dictyostelium di... [more]
TCMO_RUTGR4.869e-1135.04Trans-cinnamate 4-monooxygenase OS=Ruta graveolens... [more]
C82A4_SOYBN4.869e-1128.97Cytochrome P450 82A4 OS=Glycine max GN=CYP82A4 PE=... [more]
C519C_DICDI8.306e-1124.86Probable cytochrome P450 519C1 OS=Dictyostelium di... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06L18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06L18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835137 ID=CF835137; Name=CF835137; organism=Citrus sinensis; type=EST; length=696bp
CAAAATATCAACTTTTATTCAAAGATGGATTTGTTAATTAACTGCATACT
GTCCGCTTGTATTCACATTGGTTTGGGTGATGGCTTTAAGTTTCGTTTCC
AGAGGACGACACAAACAGCTTCCACCGGGACCGAGGCCTTATCCAGTGAT
CGGAAACCTTCTGGAGCTAGGTGCTAAACCTCACAAGTCACTGGCCAAGC
TTGCCAAGATTCATGGGCCCATAATGAGTCTAAGACTTGGCCAGGTGACC
ACAGTAGTGGTTTCTTCTCCAAGCATGGCCAAAGCCATCCTTCAAAATCA
TGATTTATCATTCTGTGATCGAATGGTCCCTGAAGCAATCTTGTCACTGC
CCTTCCCGCACCATGAATTCAGTTTGGCCTGGCTTCCAGTTTCAACAATG
TGGAAAAATCTTCGAAAAATAAGCAACATGCATATTTTCACTAGTCAGAA
ACTCGATGCCAATCAAGAGCTCCGGCGCAAGAAAATCAAAGACCTTCTTG
CTCATGTTGAAGACAATTGCCGTGCGGGTAAAGCAATAGATGTTGGCCAA
GCTGCTTTCAATACTTCACTTAATTTATTATCCAACACAATTTTTTCTAT
TGATTTGGTTAATCCCAATGAGCGAGAGTTTAAGGATACAGTTTCTGGTA
TCTTGGAAGAAGCAGGAAAGCCTAACTTGTCCGACCATTTTCCTCT
back to top