CF835210

Overview
NameCF835210
Unique NameCF835210
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835210_ssr312 microsatellite CF835210_ssr312:312..323. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2450 contig Csv1_Contig2450:58..644. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835210 vs. ExPASy Swiss-Prot
Match: RLA1_HUMAN (60S acidic ribosomal protein P1 OS=Homo sapiens GN=RPLP1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.446e-13
Identity = 44/109 (40.37%), Postives = 52/109 (47.71%), Query Frame = -2
Query:  213 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVG----SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDDDMGFSLFD 527
            E AC Y+ LILHDD + VT +KI AL+KAA V +E +WP LFAK     N+  LI NVG    +                                 ESDDDMGF LFD
Sbjct:    6 ELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114          
BLAST of CF835210 vs. ExPASy Swiss-Prot
Match: RLA1_BOVIN (60S acidic ribosomal protein P1 OS=Bos taurus GN=RPLP1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.446e-13
Identity = 44/109 (40.37%), Postives = 52/109 (47.71%), Query Frame = -2
Query:  213 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVG----SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDDDMGFSLFD 527
            E AC Y+ LILHDD + VT +KI AL+KAA V +E +WP LFAK     N+  LI NVG    +                                 ESDDDMGF LFD
Sbjct:    6 ELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114          
BLAST of CF835210 vs. ExPASy Swiss-Prot
Match: RLA1_ALTAL (60S acidic ribosomal protein P1 OS=Alternaria alternata GN=ALTA12 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.436e-12
Identity = 42/106 (39.62%), Postives = 57/106 (53.77%), Query Frame = -2
Query:  213 EQACTYATLILHDDGIAVTAEKIAALVKAANV-QIESYWPSLFAKLAEKKNLDDLILNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDDDMGFSLFD 527
            E A +YA LIL DDG+ +TA+K+ +L+KAA + ++E  W +LFAK  E K++ DL+LNVGS                                 ESD+DMGF LFD
Sbjct:    5 ELATSYAALILADDGVDITADKLQSLIKAAKIEEVEPIWTTLFAKALEGKDVKDLLLNVGSGGGAAPLPEALLLRWRAADAAPAAEEKKEEEKEESDEDMGFGLFD 110          
BLAST of CF835210 vs. ExPASy Swiss-Prot
Match: RLA1_RAT (60S acidic ribosomal protein P1 OS=Rattus norvegicus GN=Rplp1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.875e-12
Identity = 43/109 (39.45%), Postives = 52/109 (47.71%), Query Frame = -2
Query:  213 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVG----SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDDDMGFSLFD 527
            E AC Y+ LILHDD + VT +KI AL+KAA V +E +WP LFAK     N+  LI NVG    +                                 ES+DDMGF LFD
Sbjct:    6 ELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSAAAAPAEEKKVEAKKEESEESEDDMGFGLFD 114          
BLAST of CF835210 vs. ExPASy Swiss-Prot
Match: RLA1_MOUSE (60S acidic ribosomal protein P1 OS=Mus musculus GN=Rplp1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.875e-12
Identity = 43/109 (39.45%), Postives = 52/109 (47.71%), Query Frame = -2
Query:  213 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVG----SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDDDMGFSLFD 527
            E AC Y+ LILHDD + VT +KI AL+KAA V +E +WP LFAK     N+  LI NVG    +                                 ES+DDMGF LFD
Sbjct:    6 ELACIYSALILHDDEVTVTEDKINALIKAAGVSVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGAAPSTAAAPAEEKKVEAKKEESEESEDDMGFGLFD 114          
BLAST of CF835210 vs. ExPASy Swiss-Prot
Match: RLA1_OSCBR (60S acidic ribosomal protein P1 OS=Oscheius brevesophaga GN=rpl-21 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.199e-12
Identity = 42/107 (39.25%), Postives = 54/107 (50.47%), Query Frame = -2
Query:  213 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNV--GSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDDDMGFSLFD 527
            E AC YA LIL DD +A+T +KIA L+KAAN++ E +WP LFAK  E  ++ +LI +V  G+                                 ESDDDMGF L D
Sbjct:    6 ELACVYAALILQDDEVAITGDKIATLLKAANIEFEPFWPGLFAKALEGVDVKNLITSVSSGASAGPAQAAAAAPAGGAPAAAAPAESKEGRRSQGESDDDMGFGLLD 112          
BLAST of CF835210 vs. ExPASy Swiss-Prot
Match: RLA1_CHICK (60S acidic ribosomal protein P1 OS=Gallus gallus GN=RPLP1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.199e-12
Identity = 43/109 (39.45%), Postives = 52/109 (47.71%), Query Frame = -2
Query:  213 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNV----GSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDDDMGFSLFD 527
            E AC Y+ LILHDD + VT +KI AL+KAA V +E +WP LFAK     ++  LI NV    G+                                 ESDDDMGF LFD
Sbjct:    6 ELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANIDIGSLICNVGAGGGAPAAAAPAGGAAPAGGGAAPAEEKKEEEKKEESEESDDDMGFGLFD 114          
BLAST of CF835210 vs. ExPASy Swiss-Prot
Match: RLA1_DICDI (60S acidic ribosomal protein P1 OS=Dictyostelium discoideum GN=rplp1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.178e-12
Identity = 41/110 (37.27%), Postives = 55/110 (50.00%), Query Frame = -2
Query:  213 IMAGEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVG-SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDDDMGFSLFD 539
            I   E AC Y+ L+L DDGI +TA+KI  L++AAN+ + S+WP L+A+   K N+ +L+LN G S                                 ESDDDMG  LFD
Sbjct:    4 IKTEELACIYSGLLLQDDGIEITADKIKTLLEAANITVASHWPGLYARSLAKVNIPELLLNAGSSGAAGAAPVAAATSAAAPAAAAKKETKKEEVKKEESDDDMGMGLFD 113          
BLAST of CF835210 vs. ExPASy Swiss-Prot
Match: RLA1_ARTSA (60S acidic ribosomal protein P1 OS=Artemia salina PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.457e-12
Identity = 39/105 (37.14%), Postives = 49/105 (46.67%), Query Frame = -2
Query:  213 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDDDMGFSLFD 527
            E AC YA LIL DD + +T EK+  +++AA V +E YWP LF K  E  +L  +I NVGS                                 E D+DMGF LFD
Sbjct:    6 ELACVYAALILLDDDVDITTEKVNTILRAAGVSVEPYWPGLFTKALEGLDLKSMITNVGSGVGAAPAAGGAAAATEAPAAKEEKKEEKKEESEEEDEDMGFGLFD 110          
BLAST of CF835210 vs. ExPASy Swiss-Prot
Match: RLA3_SCHPO (60S acidic ribosomal protein P1-alpha 3 OS=Schizosaccharomyces pombe GN=rpa3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.127e-12
Identity = 41/108 (37.96%), Postives = 57/108 (52.78%), Query Frame = -2
Query:  213 AGEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGS-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDDDMGFSLFD 533
            A E A +Y+ LIL D+GI +T++K+ +L KAANV +E  W ++FAK  E K+L +L+LN+GS                                  ESD+DMGF LFD
Sbjct:    3 ASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGSAAAAPAAGGAGAPAAAAGGEAAAEEQKEEAKEEEESDEDMGFGLFD 110          
The following BLAST results are available for this feature:
BLAST of CF835210 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RLA1_HUMAN6.446e-1340.3760S acidic ribosomal protein P1 OS=Homo sapiens GN... [more]
RLA1_BOVIN6.446e-1340.3760S acidic ribosomal protein P1 OS=Bos taurus GN=R... [more]
RLA1_ALTAL1.436e-1239.6260S acidic ribosomal protein P1 OS=Alternaria alte... [more]
RLA1_RAT1.875e-1239.4560S acidic ribosomal protein P1 OS=Rattus norvegic... [more]
RLA1_MOUSE1.875e-1239.4560S acidic ribosomal protein P1 OS=Mus musculus GN... [more]
RLA1_OSCBR3.199e-1239.2560S acidic ribosomal protein P1 OS=Oscheius breves... [more]
RLA1_CHICK3.199e-1239.4560S acidic ribosomal protein P1 OS=Gallus gallus G... [more]
RLA1_DICDI4.178e-1237.2760S acidic ribosomal protein P1 OS=Dictyostelium d... [more]
RLA1_ARTSA5.457e-1237.1460S acidic ribosomal protein P1 OS=Artemia salina ... [more]
RLA3_SCHPO7.127e-1237.9660S acidic ribosomal protein P1-alpha 3 OS=Schizos... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06N15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835210 ID=CF835210; Name=CF835210; organism=Citrus sinensis; type=EST; length=591bp
TTTTTTTTTTTTTTTGAGNAAATAAGCATAGAGAATGATAATATTCCTTT
TGTAATTAGAAACTTACTGTCGAAGTACACCGCGAGAAATAGAACTAAAA
CAAAAACAAAAACTGAGCTATACCACTCAGCTGCGTCCTACATTCCAATA
AAACAAAAACAGGAAAAAAAAAAGAAGAGAACAAATTCTGACTCAACTGA
ATGCGGGGTTTAATCAAACAAACTGAATCCCATATCATCATCACTTTCTT
CCTTTGGTTCTTCCTTTTTCTCCTCAGCGGCAGGGGCGGCGGCTGCGGCA
CCACCAGCAGGGGCGGCGGCGGCAACGGGTGCGGCAGCACCGCCACCGGA
GCCAACATTCAAGATGAGATCATCCAAGTTTTTCTTTTCAGCCAACTTCG
CAAAAAGGCTTGGCCAGTAAGACTCTATTTGCACATTCGCTGCCTTAACC
AAAGCCGCGATCTTCTCCGCAGTGACTGCGATTCCATCGTCGTGGAGAAT
CAAAGTGGCGTAGGTGCAAGCTTGCTCTCCGGCCATTATTGCAATTGATA
ATTCTAAAATCGCACACTAAGAGAGGCTGCGTTTGGCTTGT
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