CF835210
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835210 vs. ExPASy Swiss-Prot
Match: RLA1_MAIZE (60S acidic ribosomal protein P1 OS=Zea mays GN=RPP1A PE=1 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 4.028e-23 Identity = 57/107 (53.27%), Postives = 68/107 (63.55%), Query Frame = -2 Query: 213 AGEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDDDMGFSLFD 533 +GE AC YA LIL DDGIA+TAEKIA +VKAAN+++ESYWP+LFAKL EK+N++DLIL+VGS ESDDDMGFSLFD Sbjct: 3 SGELACRYAALILSDDGIAITAEKIATIVKAANIKVESYWPALFAKLLEKRNVEDLILSVGSGGGAAPVAAAAPAGGAAAAAAPAVEEKKEEAKEESDDDMGFSLFD 109
BLAST of CF835210 vs. ExPASy Swiss-Prot
Match: RLA11_ARATH (60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana GN=RPP1A PE=1 SV=2) HSP 1 Score: 93.5893 bits (231), Expect = 7.861e-19 Identity = 43/61 (70.49%), Postives = 53/61 (86.89%), Query Frame = -2 Query: 348 GEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGS 530 GE AC+YA +IL D+GIA+TA+KIA LVKAA V IESYWP LFAK+AEK+N+ DLI+NVG+ Sbjct: 5 GELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMNVGA 65
BLAST of CF835210 vs. ExPASy Swiss-Prot
Match: RLA13_ARATH (60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana GN=RPP1C PE=1 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 1.027e-18 Identity = 43/61 (70.49%), Postives = 53/61 (86.89%), Query Frame = -2 Query: 348 GEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGS 530 GE AC+YA +IL D+GIA+TA+KIA LVKAA V IESYWP LFAK+AEK+N+ DLI+NVG+ Sbjct: 5 GELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMNVGA 65
BLAST of CF835210 vs. ExPASy Swiss-Prot
Match: RLA12_ARATH (60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana GN=RPP1B PE=1 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 1.027e-18 Identity = 42/61 (68.85%), Postives = 54/61 (88.52%), Query Frame = -2 Query: 348 GEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGS 530 GE AC+YA +IL D+GIA+T++KIA LVKAA V+IESYWP LFAK+AEK+N+ DLI+NVG+ Sbjct: 5 GELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMNVGA 65
BLAST of CF835210 vs. ExPASy Swiss-Prot
Match: RLA1_CHLRE (60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.255e-16 Identity = 46/105 (43.81%), Postives = 58/105 (55.24%), Query Frame = -2 Query: 213 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDDDMGFSLFD 527 E ACTYA LILHDDG+ +TA+ I + KAA V++E YWP+LFAKL KK++DDLI NVG+ ++DMGFSLFD Sbjct: 5 ELACTYAALILHDDGLEITADNINTICKAAGVEVEGYWPALFAKLFAKKSMDDLITNVGA--GGGAAPAAAAPAAGGAPAAGAAPKKEEKKEPSEEEDMGFSLFD 107
BLAST of CF835210 vs. ExPASy Swiss-Prot
Match: RLA1_DROME (60S acidic ribosomal protein P1 OS=Drosophila melanogaster GN=RpLP1 PE=1 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 4.037e-15 Identity = 47/107 (43.93%), Postives = 56/107 (52.34%), Query Frame = -2 Query: 213 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGS--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDDDMGFSLFD 527 E AC YA+LIL DD +AVT EKI ++KAANV++E YWP LFAK E N+ DLI N+GS +SDDDMGF LFD Sbjct: 6 ELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLITNIGSGVGAAPAGGAAPAAAAAAPAAESKKEEKKKEEESDQSDDDMGFGLFD 112
BLAST of CF835210 vs. ExPASy Swiss-Prot
Match: RLA1_CAEEL (60S acidic ribosomal protein P1 OS=Caenorhabditis elegans GN=rla-1 PE=1 SV=2) HSP 1 Score: 76.2554 bits (186), Expect = 1.299e-13 Identity = 46/106 (43.40%), Postives = 54/106 (50.94%), Query Frame = -2 Query: 213 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGS-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDDDMGFSLFD 527 E AC YA LIL DD +A+T EKIA L+KAANV+ E YWP LFAK E ++ +LI +V S ESDDDMGF LFD Sbjct: 6 ELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLITSVSSGAGSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111
BLAST of CF835210 vs. ExPASy Swiss-Prot
Match: RLA5_SCHPO (60S acidic ribosomal protein P1-alpha 5 OS=Schizosaccharomyces pombe GN=rpa5 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.215e-13 Identity = 41/107 (38.32%), Postives = 57/107 (53.27%), Query Frame = -2 Query: 213 AGEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDDDMGFSLFD 533 A E A +YA LIL D+GI +T++K+ +L KA NV++E W ++FAK E K+L +L+LN+GS ESD+DMGF LFD Sbjct: 3 ASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLLNIGSAGAASAPTAAGAGAAAPAEAAEEEKKEEAKEEEESDEDMGFGLFD 109
BLAST of CF835210 vs. ExPASy Swiss-Prot
Match: RLA1_CLAHE (60S acidic ribosomal protein P1 OS=Cladosporium herbarum GN=CLAH12 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.215e-13 Identity = 46/108 (42.59%), Postives = 57/108 (52.78%), Query Frame = -2 Query: 213 AGEQACTYATLILHDDGIAVTAEKIAALVKAANV-QIESYWPSLFAKLAEKKNLDDLILNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDDDMGFSLFD 533 A E A +YA LIL D+G+ +TA+K+ AL+ AA V +IE W SLFAK E K++ DL+LNVGS ESDDDMGF LFD Sbjct: 3 AAELASSYAALILADEGLEITADKLQALISAAKVPEIEPIWTSLFAKALEGKDVKDLLLNVGSGGGAAPAAGGAAAGGAAAVLDAPAEEKAEEEKEESDDDMGFGLFD 110
BLAST of CF835210 vs. ExPASy Swiss-Prot
Match: RLA1_SCHPO (60S acidic ribosomal protein P1-alpha 1 OS=Schizosaccharomyces pombe GN=rpa1 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.893e-13 Identity = 41/107 (38.32%), Postives = 57/107 (53.27%), Query Frame = -2 Query: 213 AGEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDDDMGFSLFD 533 A E A +Y+ LIL D+GI +T++K+ +L KAANV +E W ++FAK E K+L +L+LN+GS ESD+DMGF LFD Sbjct: 3 ASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGSGAGAAPVAGGAAAPAAADGEAPAEEKEEAKEEEESDEDMGFGLFD 109 The following BLAST results are available for this feature:
BLAST of CF835210 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 23
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835210 ID=CF835210; Name=CF835210; organism=Citrus sinensis; type=EST; length=591bpback to top |