CF835264

Overview
NameCF835264
Unique NameCF835264
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7087 contig Csv1_Contig7087:470..1152. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835264 vs. ExPASy Swiss-Prot
Match: PGLR6_ARATH (Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 44/120 (36.67%), Postives = 66/120 (55.00%), Query Frame = 1 
Query:  169 IFGTNLTDVVITGDNGTIDGQG-ELWWRKFRAGELKYTRPYLIEIMYSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG 525
            I+  ++TDV I G  G +D QG  LW  K   G    T    +    S NI+IS LT INS  +++    S++V + G+ + A   SPNTDGI+ +S  +  I +  I +GDDC+++  G
Sbjct:  116 IWFEDVTDVSIYG--GILDAQGTSLWKCKNNGGHNCPTGAKSLVFSGSNNIKISGLTSINSQKFHIVIDNSNNVNIDGVKVSADENSPNTDGIHVESSHSVHITNSRIGTGDDCISIGPG 233
The following BLAST results are available for this feature:
BLAST of CF835264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
PGLR6_ARATH8.024e-1136.67Probable polygalacturonase At2g43860 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835264 ID=CF835264; Name=CF835264; organism=Citrus sinensis; type=EST; length=682bp
TGGAAAATGGCCGTCTGGAAGCTTCAATCTCACCAGCCATTTCACTTTGT
TCCTTCAAAGGATGCTGTTCTTCTTGCTTCCCAGGATGAGAAAGAATGGC
CTGTGATCGAGCCTTTGCCATCCTACGGTAGAGGAAGGGACACAGAAGGT
GGAAGGTATAGCAGTCTTATTTTTGGAACCAACCTCACTGATGTTGTCAT
AACAGGGGACAATGGAACTATTGATGGTCAGGGTGAGCTCTGGTGGCGAA
AATTTCGTGCGGGAGAGCTAAAGTATACCCGCCCATACCTTATTGAAATC
ATGTACTCACAGAATATTCAAATATCCAACCTCACATTGATCAATTCCCC
ATCCTGGAATGTTCATCCTGTTTATAGCAGTAGTGTCATAGTTCAAGGCA
TAACGATCTTAGCGCCGGTGACATCTCCAAACACTGATGGTATTAATCCT
GATTCTTGCACAAACACCAGAATAGAGGACTGCTACATTGTATCAGGGGA
TGACTGTGTAGCAGTTAAAAGTGGCTGGGATCAGTATGGTATTGCTTACG
GGATGCCAACAAAGCAGCTTATTATCAGACGCCTAACGTGCATTTCTCCA
TTCAGTGCAGTGATTGCACTGGGAAGTGAGATGTCCGGTGGGATTCAGGA
CGTACGGGCAGAAGATATCACAGCCATTGATT
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