CF835868

Overview
NameCF835868
Unique NameCF835868
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_ALCBS (Malate dehydrogenase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=mdh PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.738e-19
Identity = 38/67 (56.72%), Postives = 50/67 (74.63%), Query Frame = -3
Query:  283 WVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 483
            W  GT EG WVSMG+Y DGSY +  G+IYSFP TC+NG+WTIVQG  +++F R K+  T +E +EE+
Sbjct:  254 WALGTDEGDWVSMGIYSDGSYGIQEGLIYSFPCTCKNGDWTIVQGLEVNDFSRGKMQATEQELAEER 320          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_HALHL (Malate dehydrogenase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=mdh PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.056e-19
Identity = 40/68 (58.82%), Postives = 50/68 (73.53%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DW  GTPEG W SM V  DGSY + AG+IYSFPVTCR G++ IV G S+D+F R ++D TA E +EE+
Sbjct:  251 DWALGTPEGEWTSMAVPSDGSYGIEAGLIYSFPVTCRGGDYKIVSGLSVDDFSRARMDQTAAELAEER 318          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_TERTT (Malate dehydrogenase OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=mdh PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.604e-19
Identity = 39/68 (57.35%), Postives = 48/68 (70.59%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DW  G+PEG WVSMGVY DGSY +  G+IYSFP  C+NG+W IVQG SIDEF + ++  T  E   E+
Sbjct:  251 DWALGSPEGDWVSMGVYSDGSYGIEKGLIYSFPCVCKNGDWEIVQGLSIDEFSQARMTATETELQGER 318          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_MYCPA (Malate dehydrogenase OS=Mycobacterium paratuberculosis GN=mdh PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.625e-19
Identity = 40/68 (58.82%), Postives = 50/68 (73.53%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DW+ GTP G WVSM V  DGSY VP G+I SFPVT ++G+WTIVQG  IDEF R ++D T  E ++E+
Sbjct:  253 DWLLGTPAGDWVSMAVISDGSYGVPEGLISSFPVTTKDGDWTIVQGLEIDEFSRSRIDKTTAELADER 320          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_MYCA1 (Malate dehydrogenase OS=Mycobacterium avium (strain 104) GN=mdh PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.625e-19
Identity = 40/68 (58.82%), Postives = 50/68 (73.53%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DW+ GTP G WVSM V  DGSY VP G+I SFPVT ++G+WTIVQG  IDEF R ++D T  E ++E+
Sbjct:  253 DWLLGTPAGDWVSMAVISDGSYGVPEGLISSFPVTTKDGDWTIVQGLEIDEFSRSRIDKTTAELADER 320          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_CELJU (Malate dehydrogenase OS=Cellvibrio japonicus (strain Ueda107) GN=mdh PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.625e-19
Identity = 39/68 (57.35%), Postives = 47/68 (69.12%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DW  GTP   WVSMGVY DGSY +  G+IYSFP  C+NG+W IVQG  I+EF R K+  T +E  EE+
Sbjct:  251 DWALGTPANDWVSMGVYSDGSYGIEKGLIYSFPCVCKNGDWEIVQGLDINEFSRAKMTATEKELQEER 318          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_ARTAT (Malate dehydrogenase OS=Arthrobacter aurescens (strain TC1) GN=mdh PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.277e-18
Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = -3
Query:  280 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEKA 486
            DW+ GTPEG WVSM V  DGSY VP G++YS+PVT   G W IV+G  +++F R+K+D TA E  +E+A
Sbjct:  252 DWLLGTPEGDWVSMAVASDGSYGVPEGLMYSYPVTTSGGNWEIVEGLEVNDFSRRKMDATAAELFDERA 320          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDHC_DICDI (Probable malate dehydrogenase 3 OS=Dictyostelium discoideum GN=mdhC PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.277e-18
Identity = 41/71 (57.75%), Postives = 51/71 (71.83%), Query Frame = -3
Query:  274 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEKALA 486
            DWV GT EG +VSMGVY DGSY VP G+I+SFPV C NG++TIVQG  +D+  +  ++LT EE   EK  A
Sbjct:  257 DWVLGTAEGEYVSMGVYSDGSYGVPEGLIFSFPVKCANGKYTIVQGLQMDDLSKNLINLTTEELVAEKTTA 327          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_DEIDV (Malate dehydrogenase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=mdh PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.301e-18
Identity = 40/68 (58.82%), Postives = 48/68 (70.59%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DW  GT EG WVSMG+  DGSY VP G+IY FPVT ++G++ IVQG  I EF R K+D TA E  EE+
Sbjct:  253 DWALGTSEGEWVSMGIPSDGSYGVPEGLIYGFPVTVKDGKYQIVQGLEISEFSRGKMDATARELEEER 320          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_MYCLE (Malate dehydrogenase OS=Mycobacterium leprae GN=mdh PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.536e-18
Identity = 38/68 (55.88%), Postives = 50/68 (73.53%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DW+ GTPEG WVSM V  DGSY VP G+I SFPVT  +G+WTIV+G  ID+F R ++D +  E ++E+
Sbjct:  253 DWLLGTPEGNWVSMAVVSDGSYGVPEGLISSFPVTTTDGDWTIVRGLGIDDFSRGRIDKSTAELADER 320          
The following BLAST results are available for this feature:
BLAST of CF835868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
MDH_ALCBS1.738e-1956.72Malate dehydrogenase OS=Alcanivorax borkumensis (s... [more]
MDH_HALHL5.056e-1958.82Malate dehydrogenase OS=Halorhodospira halophila (... [more]
MDH_TERTT6.604e-1957.35Malate dehydrogenase OS=Teredinibacter turnerae (s... [more]
MDH_MYCPA8.625e-1958.82Malate dehydrogenase OS=Mycobacterium paratubercul... [more]
MDH_MYCA18.625e-1958.82Malate dehydrogenase OS=Mycobacterium avium (strai... [more]
MDH_CELJU8.625e-1957.35Malate dehydrogenase OS=Cellvibrio japonicus (stra... [more]
MDH_ARTAT3.277e-1855.07Malate dehydrogenase OS=Arthrobacter aurescens (st... [more]
MDHC_DICDI3.277e-1857.75Probable malate dehydrogenase 3 OS=Dictyostelium d... [more]
MDH_DEIDV7.301e-1858.82Malate dehydrogenase OS=Deinococcus deserti (strai... [more]
MDH_MYCLE9.536e-1855.88Malate dehydrogenase OS=Mycobacterium leprae GN=md... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A16_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835868 ID=CF835868; Name=CF835868; organism=Citrus sinensis; type=EST; length=488bp
AAAAAAAAAATTGTTATTGATAGTTTGATACATCCTTCAAAAGGGGCCTT
TAATATCCATTTATCCAGGAAAAGAAACAAAACTCCAAAATCCCGATATT
CAAATGCAAAAATACCAACATAAAATGGAAAGGCTTCTCCATCATCAATG
GTTCCCCCAGGTTTCAACAATGGTTTTATTCAAAACTGTAACTATACCAA
CTACTCAAACAAAGCTAAGGGCCTTGGTAACCCCCTATTGAAGGGAAAAA
AGCATTTAAAAAAAACATGAGTATGCGAGGGCCTTCTCCTCGGAAAACTC
CTCTGCTGTCAAATCCAACTTCTTCCTTAAAAATTCATCAATGCTGAATC
CTTGAACAATTGTCCATTCCCCGTTGCGGCAGGTTACTGGGAATGAATAA
ATGACCCCAGCTGGTACATTGTATGAACCATCAAAATATACCCCCATGGA
AACCCAGGTGCCCTCAGGAGTTCCAAAAACCCAATCAC
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