CF835868

Overview
NameCF835868
Unique NameCF835868
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_RALSO (Malate dehydrogenase OS=Ralstonia solanacearum GN=mdh PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.334e-11
Identity = 29/69 (42.03%), Postives = 48/69 (69.57%), Query Frame = -3
Query:  280 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEKA 486
            DWV G+  G  V+MG+  +G Y +P  V++ FPVT  NG++ +V+GF +D + R+K+++T +E  EE+A
Sbjct:  255 DWVLGS-NGKIVTMGIPSNGDYEIPQDVMFGFPVTTANGKYEVVKGFEVDAYSREKINITLKELEEERA 322          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_METPP (Malate dehydrogenase OS=Methylibium petroleiphilum (strain PM1) GN=mdh PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.742e-11
Identity = 31/68 (45.59%), Postives = 43/68 (63.24%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DW  GT  G WV+MGV  +G Y +P  V++ FPVTC NGE+ IV G +ID F ++ ++ T  E   E+
Sbjct:  255 DWALGT-NGAWVTMGVPSNGEYGIPKDVMFGFPVTCANGEYKIVDGLAIDAFSQECINKTLAELQGEQ 321          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH1_RHOFD (Malate dehydrogenase 1 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=mdh1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.275e-11
Identity = 29/69 (42.03%), Postives = 43/69 (62.32%), Query Frame = -3
Query:  280 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEKA 486
            DW  GT  G WV+MG+  DG Y +P   ++ FPVTC  GE+ +VQ   ID F ++ ++ T +E  +E+A
Sbjct:  255 DWALGT-NGKWVTMGIPSDGQYGIPKETMFGFPVTCEGGEYKVVQNLPIDAFSQECINKTLKELQDEQA 322          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_RALEH (Malate dehydrogenase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=mdh PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.880e-11
Identity = 30/69 (43.48%), Postives = 46/69 (66.67%), Query Frame = -3
Query:  280 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEKA 486
            DWV GT  G  V+MG+  +G Y +PA  ++ +PVT  NG++ IV+G  ID + ++K+++T  E  EEKA
Sbjct:  253 DWVLGT-NGKVVTMGIPSNGEYGIPADTMFGYPVTTANGKYEIVKGLEIDAYSQEKINITLNELEEEKA 320          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_ACICJ (Malate dehydrogenase OS=Acidiphilium cryptum (strain JF-5) GN=mdh PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.619e-11
Identity = 30/68 (44.12%), Postives = 43/68 (63.24%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DWV G+ +G WVSM +  DGSY +P G+++  PVT + G  T V   +ID F + +LD+T  E  EE+
Sbjct:  253 DWVVGS-DGRWVSMAIPSDGSYGIPEGIMFGVPVTTQGGVVTRVPNLAIDAFAQSRLDITLNELKEER 319          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_RALPJ (Malate dehydrogenase OS=Ralstonia pickettii (strain 12J) GN=mdh PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.645e-11
Identity = 30/69 (43.48%), Postives = 45/69 (65.22%), Query Frame = -3
Query:  280 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEKA 486
            DWV GT  G  V+MG+  +G Y +P  V++ FPVT  NG++ IV+G  IDE+ + K+ +T +E   E+A
Sbjct:  255 DWVLGT-NGKIVTMGIPSNGEYGIPKDVMFGFPVTTENGKYKIVEGLEIDEYSQGKIKITLDELEGERA 322          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_LEPCP (Malate dehydrogenase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=mdh PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.645e-11
Identity = 30/68 (44.12%), Postives = 41/68 (60.29%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DW  GT  G WV+MGV   G Y +PA  ++ +PVTC  GE+ IV+G  ID F ++ ++ T  E   EK
Sbjct:  255 DWALGT-NGAWVTMGVPSKGEYGIPAETMFGYPVTCEGGEYKIVEGLPIDAFSQECINKTLAELEGEK 321          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_CUPTR (Malate dehydrogenase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=mdh PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.645e-11
Identity = 29/69 (42.03%), Postives = 47/69 (68.12%), Query Frame = -3
Query:  280 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEKA 486
            DWV G+  G  V+MG+  +G Y +PA  ++ +PVT  NG++ IV+G  ID + ++K+++T +E  EEKA
Sbjct:  253 DWVLGS-NGKVVTMGIPSNGEYGIPADTMFGYPVTTANGKYEIVKGLEIDAYSQEKINITLKELEEEKA 320          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH2_BURTA (Malate dehydrogenase 2 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=mdh2 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.645e-11
Identity = 29/67 (43.28%), Postives = 42/67 (62.69%), Query Frame = -3
Query:  286 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEE 486
            DW+FG+ +G WVSM V  DGSY +  G+++  PV C  G +  V+   ID F R+++DL+  E  EE
Sbjct:  253 DWIFGS-DGRWVSMSVPSDGSYGIAPGLMFGVPVICDGGRYERVKDIGIDAFARQRIDLSVRELQEE 318          
The following BLAST results are available for this feature:
BLAST of CF835868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
MDH_RALSO1.334e-1142.03Malate dehydrogenase OS=Ralstonia solanacearum GN=... [more]
MDH_METPP1.742e-1145.59Malate dehydrogenase OS=Methylibium petroleiphilum... [more]
MDH1_RHOFD2.275e-1142.03Malate dehydrogenase 1 OS=Rhodoferax ferrireducens... [more]
MDH_RALEH3.880e-1143.48Malate dehydrogenase OS=Ralstonia eutropha (strain... [more]
MDH_ACICJ6.619e-1144.12Malate dehydrogenase OS=Acidiphilium cryptum (stra... [more]
MDH_RALPJ8.645e-1143.48Malate dehydrogenase OS=Ralstonia pickettii (strai... [more]
MDH_LEPCP8.645e-1144.12Malate dehydrogenase OS=Leptothrix cholodnii (stra... [more]
MDH_CUPTR8.645e-1142.03Malate dehydrogenase OS=Cupriavidus taiwanensis (s... [more]
MDH2_BURTA8.645e-1143.28Malate dehydrogenase 2 OS=Burkholderia thailandens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A16_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835868 ID=CF835868; Name=CF835868; organism=Citrus sinensis; type=EST; length=488bp
AAAAAAAAAATTGTTATTGATAGTTTGATACATCCTTCAAAAGGGGCCTT
TAATATCCATTTATCCAGGAAAAGAAACAAAACTCCAAAATCCCGATATT
CAAATGCAAAAATACCAACATAAAATGGAAAGGCTTCTCCATCATCAATG
GTTCCCCCAGGTTTCAACAATGGTTTTATTCAAAACTGTAACTATACCAA
CTACTCAAACAAAGCTAAGGGCCTTGGTAACCCCCTATTGAAGGGAAAAA
AGCATTTAAAAAAAACATGAGTATGCGAGGGCCTTCTCCTCGGAAAACTC
CTCTGCTGTCAAATCCAACTTCTTCCTTAAAAATTCATCAATGCTGAATC
CTTGAACAATTGTCCATTCCCCGTTGCGGCAGGTTACTGGGAATGAATAA
ATGACCCCAGCTGGTACATTGTATGAACCATCAAAATATACCCCCATGGA
AACCCAGGTGCCCTCAGGAGTTCCAAAAACCCAATCAC
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