CF835868

Overview
NameCF835868
Unique NameCF835868
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_ALHEH (Malate dehydrogenase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.124e-17
Identity = 38/68 (55.88%), Postives = 47/68 (69.12%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DWV GTPEG W SM V  DGSY +  G+IYS+P  CRNG++ IVQ   IDEF R+K+  T +E  EE+
Sbjct:  251 DWVLGTPEGEWTSMAVPSDGSYGIEKGIIYSYPCVCRNGDYEIVQDLEIDEFSREKMQATEKELVEER 318          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_THETH (Malate dehydrogenase OS=Thermus thermophilus GN=mdh PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.181e-17
Identity = 34/67 (50.75%), Postives = 49/67 (73.13%), Query Frame = -3
Query:  286 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEE 486
            DW  GTPEG WVSM V   G Y +P G++YSFPVT ++G + +V+G  I+EF RK++++TA+E  +E
Sbjct:  251 DWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQELLDE 317          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_THET8 (Malate dehydrogenase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=mdh PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.181e-17
Identity = 34/67 (50.75%), Postives = 49/67 (73.13%), Query Frame = -3
Query:  286 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEE 486
            DW  GTPEG WVSM V   G Y +P G++YSFPVT ++G + +V+G  I+EF RK++++TA+E  +E
Sbjct:  251 DWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQELLDE 317          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_THET2 (Malate dehydrogenase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=mdh PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.181e-17
Identity = 34/67 (50.75%), Postives = 49/67 (73.13%), Query Frame = -3
Query:  286 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEE 486
            DW  GTPEG WVSM V   G Y +P G++YSFPVT ++G + +V+G  I+EF RK++++TA+E  +E
Sbjct:  251 DWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQELLDE 317          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_THEFY (Malate dehydrogenase OS=Thermobifida fusca (strain YX) GN=mdh PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.072e-17
Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DWV GTPEG W S+ +  DGSY VP G++ SFPV  RNG W IVQG  I+EF R+++D +  E  EE+
Sbjct:  253 DWVNGTPEGDWTSVALPSDGSYGVPEGLVSSFPVVSRNGSWEIVQGLEINEFSRERIDASVRELEEER 320          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_NOCSJ (Malate dehydrogenase OS=Nocardioides sp. (strain BAA-499 / JS614) GN=mdh PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.377e-16
Identity = 36/68 (52.94%), Postives = 49/68 (72.06%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DW+FG+ +  WVSM V  DGSY VP G+I SFPVT ++G+W IVQG  ID+F R K+D +  E ++E+
Sbjct:  252 DWLFGSADADWVSMAVVSDGSYGVPEGLISSFPVTTKDGDWEIVQGLEIDDFSRAKIDASTAELADER 319          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_ACIAD (Malate dehydrogenase OS=Acinetobacter sp. (strain ADP1) GN=mdh PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.377e-16
Identity = 38/69 (55.07%), Postives = 48/69 (69.57%), Query Frame = -3
Query:  280 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEKA 486
            DW  GT  G WV+MG+  DGSY +P GVIY  PVTC NGE+  V+G  IDEF R+++D T +E  EE+A
Sbjct:  254 DWALGT-NGKWVTMGIPSDGSYGIPEGVIYGVPVTCENGEYKRVEGLEIDEFSRERMDKTLQELEEERA 321          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_MYCTU (Malate dehydrogenase OS=Mycobacterium tuberculosis GN=mdh PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.798e-16
Identity = 37/69 (53.62%), Postives = 47/69 (68.12%), Query Frame = -3
Query:  280 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEKA 486
            DW+ GTP   WVSM V  DGSY VP G+I SFPVT + G WTIV G  IDEF R ++D +  E ++E++
Sbjct:  253 DWLLGTPADDWVSMAVVSDGSYGVPEGLISSFPVTTKGGNWTIVSGLEIDEFSRGRIDKSTAELADERS 321          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_MYCTA (Malate dehydrogenase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=mdh PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.798e-16
Identity = 37/69 (53.62%), Postives = 47/69 (68.12%), Query Frame = -3
Query:  280 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEKA 486
            DW+ GTP   WVSM V  DGSY VP G+I SFPVT + G WTIV G  IDEF R ++D +  E ++E++
Sbjct:  253 DWLLGTPADDWVSMAVVSDGSYGVPEGLISSFPVTTKGGNWTIVSGLEIDEFSRGRIDKSTAELADERS 321          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_MYCBT (Malate dehydrogenase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=mdh PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.798e-16
Identity = 37/69 (53.62%), Postives = 47/69 (68.12%), Query Frame = -3
Query:  280 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEKA 486
            DW+ GTP   WVSM V  DGSY VP G+I SFPVT + G WTIV G  IDEF R ++D +  E ++E++
Sbjct:  253 DWLLGTPADDWVSMAVVSDGSYGVPEGLISSFPVTTKGGNWTIVSGLEIDEFSRGRIDKSTAELADERS 321          
The following BLAST results are available for this feature:
BLAST of CF835868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
MDH_ALHEH2.124e-1755.88Malate dehydrogenase OS=Alkalilimnicola ehrlichei ... [more]
MDH_THETH6.181e-1750.75Malate dehydrogenase OS=Thermus thermophilus GN=md... [more]
MDH_THET86.181e-1750.75Malate dehydrogenase OS=Thermus thermophilus (stra... [more]
MDH_THET26.181e-1750.75Malate dehydrogenase OS=Thermus thermophilus (stra... [more]
MDH_THEFY8.072e-1754.41Malate dehydrogenase OS=Thermobifida fusca (strain... [more]
MDH_NOCSJ1.377e-1652.94Malate dehydrogenase OS=Nocardioides sp. (strain B... [more]
MDH_ACIAD1.377e-1655.07Malate dehydrogenase OS=Acinetobacter sp. (strain ... [more]
MDH_MYCTU1.798e-1653.62Malate dehydrogenase OS=Mycobacterium tuberculosis... [more]
MDH_MYCTA1.798e-1653.62Malate dehydrogenase OS=Mycobacterium tuberculosis... [more]
MDH_MYCBT1.798e-1653.62Malate dehydrogenase OS=Mycobacterium bovis (strai... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02A16_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835868 ID=CF835868; Name=CF835868; organism=Citrus sinensis; type=EST; length=488bp
AAAAAAAAAATTGTTATTGATAGTTTGATACATCCTTCAAAAGGGGCCTT
TAATATCCATTTATCCAGGAAAAGAAACAAAACTCCAAAATCCCGATATT
CAAATGCAAAAATACCAACATAAAATGGAAAGGCTTCTCCATCATCAATG
GTTCCCCCAGGTTTCAACAATGGTTTTATTCAAAACTGTAACTATACCAA
CTACTCAAACAAAGCTAAGGGCCTTGGTAACCCCCTATTGAAGGGAAAAA
AGCATTTAAAAAAAACATGAGTATGCGAGGGCCTTCTCCTCGGAAAACTC
CTCTGCTGTCAAATCCAACTTCTTCCTTAAAAATTCATCAATGCTGAATC
CTTGAACAATTGTCCATTCCCCGTTGCGGCAGGTTACTGGGAATGAATAA
ATGACCCCAGCTGGTACATTGTATGAACCATCAAAATATACCCCCATGGA
AACCCAGGTGCCCTCAGGAGTTCCAAAAACCCAATCAC
back to top