CF835868

Overview
NameCF835868
Unique NameCF835868
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_MYCBP (Malate dehydrogenase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=mdh PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.798e-16
Identity = 37/69 (53.62%), Postives = 47/69 (68.12%), Query Frame = -3
Query:  280 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEKA 486
            DW+ GTP   WVSM V  DGSY VP G+I SFPVT + G WTIV G  IDEF R ++D +  E ++E++
Sbjct:  253 DWLLGTPADDWVSMAVVSDGSYGVPEGLISSFPVTTKGGNWTIVSGLEIDEFSRGRIDKSTAELADERS 321          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_MYCBO (Malate dehydrogenase OS=Mycobacterium bovis GN=mdh PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.798e-16
Identity = 37/69 (53.62%), Postives = 47/69 (68.12%), Query Frame = -3
Query:  280 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEKA 486
            DW+ GTP   WVSM V  DGSY VP G+I SFPVT + G WTIV G  IDEF R ++D +  E ++E++
Sbjct:  253 DWLLGTPADDWVSMAVVSDGSYGVPEGLISSFPVTTKGGNWTIVSGLEIDEFSRGRIDKSTAELADERS 321          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_DEIRA (Malate dehydrogenase OS=Deinococcus radiodurans GN=mdh PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.798e-16
Identity = 35/68 (51.47%), Postives = 48/68 (70.59%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DW  GT +G WVSMG+  DGSY +P G+IY FPV  ++G++ IVQG  + +F R K+D TA+E  EE+
Sbjct:  253 DWALGTKDGEWVSMGIPSDGSYGIPEGLIYGFPVRVKDGKYEIVQGLDVSDFSRGKMDATAQELEEER 320          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_BDEBA (Malate dehydrogenase OS=Bdellovibrio bacteriovorus GN=mdh PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.798e-16
Identity = 37/68 (54.41%), Postives = 51/68 (75.00%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DW  GT  G WV+MG+  DGSY++P G++Y FPVTC+NGE+ IV+G  ID F R+K++ T +E +EEK
Sbjct:  262 DWWLGT-NGEWVTMGIPSDGSYDIPEGIMYGFPVTCKNGEYEIVKGLEIDAFSREKMNNTLKELNEEK 328          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_MYCUA (Malate dehydrogenase OS=Mycobacterium ulcerans (strain Agy99) GN=mdh PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.349e-16
Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = -3
Query:  283 WVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 483
            W+ GTP   WVSM V  DGSY VP G+I SFPVT ++G W+IV+G  IDEF R ++D TA E ++E+
Sbjct:  254 WLLGTPADDWVSMAVLSDGSYGVPEGLISSFPVTTKDGNWSIVKGLEIDEFSRGRIDKTAAELADER 320          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_SACEN (Malate dehydrogenase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=mdh PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.006e-16
Identity = 38/67 (56.72%), Postives = 46/67 (68.66%), Query Frame = -3
Query:  283 WVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 483
            WV GTPEG W S  V  DGSY VP G+I SFPV  R+G + IVQG  IDEF R+++D +  E SEE+
Sbjct:  253 WVNGTPEGDWTSAAVVSDGSYGVPEGLISSFPVVARDGRYEIVQGLEIDEFSRQRIDASVNELSEER 319          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_PROAC (Malate dehydrogenase OS=Propionibacterium acnes GN=mdh PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.006e-16
Identity = 38/68 (55.88%), Postives = 49/68 (72.06%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DW+  TPEG WVSM +  DGSY VP G+I SFPVT  NG+  IVQG  ID+F R K+D +A+E ++E+
Sbjct:  251 DWMGSTPEGDWVSMAIPSDGSYGVPEGLISSFPVTITNGKVEIVQGLDIDDFSRAKIDASAKELADER 318          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_NITMU (Malate dehydrogenase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=mdh PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.006e-16
Identity = 37/68 (54.41%), Postives = 45/68 (66.18%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DWV GTPEG WVSMG+  DGSY +P GVIY +PVTC+ GE+ IV    I EF R K+  +  E   E+
Sbjct:  252 DWVSGTPEGDWVSMGIPSDGSYGIPEGVIYGYPVTCQGGEYKIVPDLEISEFSRMKMQASYRELMGER 319          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_ACIBY (Malate dehydrogenase OS=Acinetobacter baumannii (strain AYE) GN=mdh PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.006e-16
Identity = 38/69 (55.07%), Postives = 48/69 (69.57%), Query Frame = -3
Query:  280 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEKA 486
            DW  GT  G WV+MGV  DGSY +P GV++ FPVT  NGE+ IVQG  IDEF R++++ T  E  EE+A
Sbjct:  254 DWALGT-NGKWVTMGVPSDGSYGIPEGVMFGFPVTTENGEYKIVQGLEIDEFSRERINFTLNELEEERA 321          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_ACIBT (Malate dehydrogenase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=mdh PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 4.006e-16
Identity = 38/69 (55.07%), Postives = 48/69 (69.57%), Query Frame = -3
Query:  280 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEKA 486
            DW  GT  G WV+MGV  DGSY +P GV++ FPVT  NGE+ IVQG  IDEF R++++ T  E  EE+A
Sbjct:  254 DWALGT-NGKWVTMGVPSDGSYGIPEGVMFGFPVTTENGEYKIVQGLEIDEFSRERINFTLNELEEERA 321          
The following BLAST results are available for this feature:
BLAST of CF835868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
MDH_MYCBP1.798e-1653.62Malate dehydrogenase OS=Mycobacterium bovis (strai... [more]
MDH_MYCBO1.798e-1653.62Malate dehydrogenase OS=Mycobacterium bovis GN=mdh... [more]
MDH_DEIRA1.798e-1651.47Malate dehydrogenase OS=Deinococcus radiodurans GN... [more]
MDH_BDEBA1.798e-1654.41Malate dehydrogenase OS=Bdellovibrio bacteriovorus... [more]
MDH_MYCUA2.349e-1655.22Malate dehydrogenase OS=Mycobacterium ulcerans (st... [more]
MDH_SACEN4.006e-1656.72Malate dehydrogenase OS=Saccharopolyspora erythrae... [more]
MDH_PROAC4.006e-1655.88Malate dehydrogenase OS=Propionibacterium acnes GN... [more]
MDH_NITMU4.006e-1654.41Malate dehydrogenase OS=Nitrosospira multiformis (... [more]
MDH_ACIBY4.006e-1655.07Malate dehydrogenase OS=Acinetobacter baumannii (s... [more]
MDH_ACIBT4.006e-1655.07Malate dehydrogenase OS=Acinetobacter baumannii (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A16_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835868 ID=CF835868; Name=CF835868; organism=Citrus sinensis; type=EST; length=488bp
AAAAAAAAAATTGTTATTGATAGTTTGATACATCCTTCAAAAGGGGCCTT
TAATATCCATTTATCCAGGAAAAGAAACAAAACTCCAAAATCCCGATATT
CAAATGCAAAAATACCAACATAAAATGGAAAGGCTTCTCCATCATCAATG
GTTCCCCCAGGTTTCAACAATGGTTTTATTCAAAACTGTAACTATACCAA
CTACTCAAACAAAGCTAAGGGCCTTGGTAACCCCCTATTGAAGGGAAAAA
AGCATTTAAAAAAAACATGAGTATGCGAGGGCCTTCTCCTCGGAAAACTC
CTCTGCTGTCAAATCCAACTTCTTCCTTAAAAATTCATCAATGCTGAATC
CTTGAACAATTGTCCATTCCCCGTTGCGGCAGGTTACTGGGAATGAATAA
ATGACCCCAGCTGGTACATTGTATGAACCATCAAAATATACCCCCATGGA
AACCCAGGTGCCCTCAGGAGTTCCAAAAACCCAATCAC
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