CF835868

Overview
NameCF835868
Unique NameCF835868
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_ACIBS (Malate dehydrogenase OS=Acinetobacter baumannii (strain SDF) GN=mdh PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.006e-16
Identity = 38/69 (55.07%), Postives = 48/69 (69.57%), Query Frame = -3
Query:  280 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEKA 486
            DW  GT  G WV+MGV  DGSY +P GV++ FPVT  NGE+ IVQG  IDEF R++++ T  E  EE+A
Sbjct:  254 DWALGT-NGKWVTMGVPSDGSYGIPEGVMFGFPVTTENGEYKIVQGLEIDEFSRERINFTLNELEEERA 321          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_ACIBC (Malate dehydrogenase OS=Acinetobacter baumannii (strain ACICU) GN=mdh PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.006e-16
Identity = 38/69 (55.07%), Postives = 48/69 (69.57%), Query Frame = -3
Query:  280 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEKA 486
            DW  GT  G WV+MGV  DGSY +P GV++ FPVT  NGE+ IVQG  IDEF R++++ T  E  EE+A
Sbjct:  254 DWALGT-NGKWVTMGVPSDGSYGIPEGVMFGFPVTTENGEYKIVQGLEIDEFSRERINFTLNELEEERA 321          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_ACIB5 (Malate dehydrogenase OS=Acinetobacter baumannii (strain AB0057) GN=mdh PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.006e-16
Identity = 38/69 (55.07%), Postives = 48/69 (69.57%), Query Frame = -3
Query:  280 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEKA 486
            DW  GT  G WV+MGV  DGSY +P GV++ FPVT  NGE+ IVQG  IDEF R++++ T  E  EE+A
Sbjct:  254 DWALGT-NGKWVTMGVPSDGSYGIPEGVMFGFPVTTENGEYKIVQGLEIDEFSRERINFTLNELEEERA 321          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_ACIB3 (Malate dehydrogenase OS=Acinetobacter baumannii (strain AB307-0294) GN=mdh PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.006e-16
Identity = 38/69 (55.07%), Postives = 48/69 (69.57%), Query Frame = -3
Query:  280 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEKA 486
            DW  GT  G WV+MGV  DGSY +P GV++ FPVT  NGE+ IVQG  IDEF R++++ T  E  EE+A
Sbjct:  254 DWALGT-NGKWVTMGVPSDGSYGIPEGVMFGFPVTTENGEYKIVQGLEIDEFSRERINFTLNELEEERA 321          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDHC_FELCA (Malate dehydrogenase, cytoplasmic OS=Felis catus GN=MDH1 PE=2 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 4.006e-16
Identity = 38/70 (54.29%), Postives = 54/70 (77.14%), Query Frame = -3
Query:  271 FGTPEGTWVSMGVYFDGS-YNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEKALAY 477
            FGTPEG +VSMG+  DG+ Y VP  ++YSFPVT +N  W +V+G +I++F R+K+DLTA+E +EEK  A+
Sbjct:  259 FGTPEGEFVSMGIISDGNPYGVPDDLLYSFPVTIKNKTWKVVEGLTINDFSREKMDLTAKELAEEKETAF 328          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_PSYCK (Malate dehydrogenase OS=Psychrobacter cryohalolentis (strain K5) GN=mdh PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.232e-16
Identity = 36/68 (52.94%), Postives = 48/68 (70.59%), Query Frame = -3
Query:  283 WVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSI-DEFLRKKLDLTAEEFSEEK 483
            WV GT E  WVSMGVY +G Y +  G+IYSFPVTC NG+W+IV G  +  +F ++K+  T +E SEE+
Sbjct:  254 WVMGTDENDWVSMGVYSNGEYGIAKGLIYSFPVTCANGDWSIVDGVDVSSDFSKEKMAATEQELSEER 321          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_NITEU (Malate dehydrogenase OS=Nitrosomonas europaea GN=mdh PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.232e-16
Identity = 34/67 (50.75%), Postives = 46/67 (68.66%), Query Frame = -3
Query:  286 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEE 486
            DW+FGT +  W++MG+  DGSY +P GVIY FPV C+NG   IVQG  I  F R +LD+  +E ++E
Sbjct:  252 DWIFGTRDDDWITMGILSDGSYKIPKGVIYGFPVVCKNGGRKIVQGLEISPFSRTRLDIAYDELTQE 318          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_AZOSB (Malate dehydrogenase OS=Azoarcus sp. (strain BH72) GN=mdh PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.232e-16
Identity = 38/68 (55.88%), Postives = 48/68 (70.59%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DWV G+  G WV+MG+  DGSY +P GVIY FPVT  NGE+ IVQG  IDEF R+++ +T  E  EE+
Sbjct:  256 DWVLGS-NGEWVTMGIPSDGSYGIPEGVIYGFPVTTENGEYKIVQGLEIDEFSRERMTVTLNELLEER 322          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_STRCO (Malate dehydrogenase OS=Streptomyces coelicolor GN=mdh PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.834e-16
Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = -3
Query:  283 WVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 483
            WV GT EG W SMG+  DGSY VP G+I SFPVT ++G + IVQG  I+EF R ++D + +E SEE+
Sbjct:  254 WVNGTAEGDWTSMGIPSDGSYGVPEGIISSFPVTTKDGSYEIVQGLDINEFSRARIDASVKELSEER 320          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_MYCMM (Malate dehydrogenase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=mdh PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.834e-16
Identity = 36/67 (53.73%), Postives = 47/67 (70.15%), Query Frame = -3
Query:  283 WVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 483
            W+ GTP   WVSM V  DGSY VP G+I SFPVT ++G W+IV+G  IDEF R ++D T  E ++E+
Sbjct:  254 WLLGTPADDWVSMAVLSDGSYGVPEGLISSFPVTTKDGNWSIVKGLEIDEFSRGRIDKTTAELADER 320          
The following BLAST results are available for this feature:
BLAST of CF835868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
MDH_ACIBS4.006e-1655.07Malate dehydrogenase OS=Acinetobacter baumannii (s... [more]
MDH_ACIBC4.006e-1655.07Malate dehydrogenase OS=Acinetobacter baumannii (s... [more]
MDH_ACIB54.006e-1655.07Malate dehydrogenase OS=Acinetobacter baumannii (s... [more]
MDH_ACIB34.006e-1655.07Malate dehydrogenase OS=Acinetobacter baumannii (s... [more]
MDHC_FELCA4.006e-1654.29Malate dehydrogenase, cytoplasmic OS=Felis catus G... [more]
MDH_PSYCK5.232e-1652.94Malate dehydrogenase OS=Psychrobacter cryohalolent... [more]
MDH_NITEU5.232e-1650.75Malate dehydrogenase OS=Nitrosomonas europaea GN=m... [more]
MDH_AZOSB5.232e-1655.88Malate dehydrogenase OS=Azoarcus sp. (strain BH72)... [more]
MDH_STRCO6.834e-1655.22Malate dehydrogenase OS=Streptomyces coelicolor GN... [more]
MDH_MYCMM6.834e-1653.73Malate dehydrogenase OS=Mycobacterium marinum (str... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02A16_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835868 ID=CF835868; Name=CF835868; organism=Citrus sinensis; type=EST; length=488bp
AAAAAAAAAATTGTTATTGATAGTTTGATACATCCTTCAAAAGGGGCCTT
TAATATCCATTTATCCAGGAAAAGAAACAAAACTCCAAAATCCCGATATT
CAAATGCAAAAATACCAACATAAAATGGAAAGGCTTCTCCATCATCAATG
GTTCCCCCAGGTTTCAACAATGGTTTTATTCAAAACTGTAACTATACCAA
CTACTCAAACAAAGCTAAGGGCCTTGGTAACCCCCTATTGAAGGGAAAAA
AGCATTTAAAAAAAACATGAGTATGCGAGGGCCTTCTCCTCGGAAAACTC
CTCTGCTGTCAAATCCAACTTCTTCCTTAAAAATTCATCAATGCTGAATC
CTTGAACAATTGTCCATTCCCCGTTGCGGCAGGTTACTGGGAATGAATAA
ATGACCCCAGCTGGTACATTGTATGAACCATCAAAATATACCCCCATGGA
AACCCAGGTGCCCTCAGGAGTTCCAAAAACCCAATCAC
back to top