CF835868

Overview
NameCF835868
Unique NameCF835868
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_CHRVO (Malate dehydrogenase OS=Chromobacterium violaceum GN=mdh PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.834e-16
Identity = 38/69 (55.07%), Postives = 47/69 (68.12%), Query Frame = -3
Query:  280 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEKA 486
            DWV GT  G WV+MGV  DGSY +P GV+Y  PV C NGE+  V+G  ID F R+++DLT  E  EE+A
Sbjct:  252 DWVLGT-NGKWVTMGVPSDGSYGIPEGVMYGVPVVCENGEYKRVEGLEIDAFSRERMDLTLAELEEERA 319          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDHC_PIG (Malate dehydrogenase, cytoplasmic OS=Sus scrofa GN=MDH1 PE=1 SV=4)

HSP 1 Score: 82.8037 bits (203), Expect = 8.925e-16
Identity = 39/70 (55.71%), Postives = 53/70 (75.71%), Query Frame = -3
Query:  271 FGTPEGTWVSMGVYFDG-SYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEKALAY 477
            FGTPEG +VSMG+  DG SY VP  ++YSFPVT ++  W IV+G  I++F R+K+DLTA+E +EEK  A+
Sbjct:  259 FGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEGLPINDFSREKMDLTAKELAEEKETAF 328          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_STRGG (Malate dehydrogenase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=mdh PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.166e-15
Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = -3
Query:  283 WVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 483
            WV GT EG W SMG+  DGSY VP G+I SFPVT ++G++ IVQG  I+EF R ++D + +E +EE+
Sbjct:  254 WVNGTAEGDWTSMGIPSDGSYGVPEGIISSFPVTTKDGKYEIVQGLDINEFSRTRIDASVKELTEER 320          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDHC_BOVIN (Malate dehydrogenase, cytoplasmic OS=Bos taurus GN=MDH1 PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 1.522e-15
Identity = 37/70 (52.86%), Postives = 53/70 (75.71%), Query Frame = -3
Query:  271 FGTPEGTWVSMGVYFDG-SYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEKALAY 477
            FGTPEG +VSMG+  DG SY +P  ++YSFPVT ++  W +V+G  I++F R+K+DLTA+E +EEK  A+
Sbjct:  259 FGTPEGEFVSMGIISDGNSYGIPDDLLYSFPVTIKDKTWKVVEGLPINDFSREKMDLTAKELAEEKETAF 328          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_LARHH (Malate dehydrogenase OS=Laribacter hongkongensis (strain HLHK9) GN=mdh PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.988e-15
Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DWV GT  G WV+MG+  DGSY +P GV Y FPVTC++G++ IVQG  IDEF R  ++ T  E  EE+
Sbjct:  255 DWVLGT-NGKWVTMGIPSDGSYGIPEGVTYGFPVTCKDGKYEIVQGLEIDEFSRACMNKTLAELEEER 321          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDHC_XENLA (Malate dehydrogenase, cytoplasmic OS=Xenopus laevis GN=mdh1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.988e-15
Identity = 38/70 (54.29%), Postives = 52/70 (74.29%), Query Frame = -3
Query:  271 FGTPEGTWVSMGVYFDG-SYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEKALAY 477
            FGTPEG +VSMGV  DG SY VP  ++YSFP+T +N  W IV+G  I++F R+K+D+TA+E  +EK  A+
Sbjct:  259 FGTPEGQFVSMGVISDGNSYGVPEDLMYSFPLTIKNKTWKIVEGLCINDFSREKMDITAKELQDEKETAF 328          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDHC_RAT (Malate dehydrogenase, cytoplasmic OS=Rattus norvegicus GN=Mdh1 PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 1.988e-15
Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = -3
Query:  271 FGTPEGTWVSMGVYFDG-SYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEKALAY 477
            FGTPEG +VSMGV  DG SY VP  ++YSFPV  +N  W  V+G  I++F R+K+DLTA+E +EEK  A+
Sbjct:  259 FGTPEGEFVSMGVISDGNSYGVPDDLLYSFPVVIKNKTWKFVEGLPINDFSREKMDLTAKELTEEKETAF 328          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDHC_MOUSE (Malate dehydrogenase, cytoplasmic OS=Mus musculus GN=Mdh1 PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 1.988e-15
Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = -3
Query:  271 FGTPEGTWVSMGVYFDG-SYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEKALAY 477
            FGTPEG +VSMGV  DG SY VP  ++YSFPV  +N  W  V+G  I++F R+K+DLTA+E +EEK  A+
Sbjct:  259 FGTPEGEFVSMGVISDGNSYGVPDDLLYSFPVVIKNKTWKFVEGLPINDFSREKMDLTAKELTEEKETAF 328          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_NOCFA (Malate dehydrogenase OS=Nocardia farcinica GN=mdh PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.597e-15
Identity = 35/68 (51.47%), Postives = 46/68 (67.65%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DWV GTP G W SM V  DGSY VP G+I SFPVTC +G + IV+G  +D F R+++D +  E + E+
Sbjct:  256 DWVLGTPAGEWTSMAVPSDGSYGVPDGLISSFPVTCADGAYRIVEGLEVDAFSRERIDASVAELTAER 323          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDHC_HUMAN (Malate dehydrogenase, cytoplasmic OS=Homo sapiens GN=MDH1 PE=1 SV=4)

HSP 1 Score: 81.2629 bits (199), Expect = 2.597e-15
Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = -3
Query:  271 FGTPEGTWVSMGVYFDG-SYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEKALAY 477
            FGTPEG +VSMGV  DG SY VP  ++YSFPV  +N  W  V+G  I++F R+K+DLTA+E +EEK  A+
Sbjct:  259 FGTPEGEFVSMGVISDGNSYGVPDDLLYSFPVVIKNKTWKFVEGLPINDFSREKMDLTAKELTEEKESAF 328          
The following BLAST results are available for this feature:
BLAST of CF835868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
MDH_CHRVO6.834e-1655.07Malate dehydrogenase OS=Chromobacterium violaceum ... [more]
MDHC_PIG8.925e-1655.71Malate dehydrogenase, cytoplasmic OS=Sus scrofa GN... [more]
MDH_STRGG1.166e-1553.73Malate dehydrogenase OS=Streptomyces griseus subsp... [more]
MDHC_BOVIN1.522e-1552.86Malate dehydrogenase, cytoplasmic OS=Bos taurus GN... [more]
MDH_LARHH1.988e-1554.41Malate dehydrogenase OS=Laribacter hongkongensis (... [more]
MDHC_XENLA1.988e-1554.29Malate dehydrogenase, cytoplasmic OS=Xenopus laevi... [more]
MDHC_RAT1.988e-1555.71Malate dehydrogenase, cytoplasmic OS=Rattus norveg... [more]
MDHC_MOUSE1.988e-1555.71Malate dehydrogenase, cytoplasmic OS=Mus musculus ... [more]
MDH_NOCFA2.597e-1551.47Malate dehydrogenase OS=Nocardia farcinica GN=mdh ... [more]
MDHC_HUMAN2.597e-1555.71Malate dehydrogenase, cytoplasmic OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A16_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835868 ID=CF835868; Name=CF835868; organism=Citrus sinensis; type=EST; length=488bp
AAAAAAAAAATTGTTATTGATAGTTTGATACATCCTTCAAAAGGGGCCTT
TAATATCCATTTATCCAGGAAAAGAAACAAAACTCCAAAATCCCGATATT
CAAATGCAAAAATACCAACATAAAATGGAAAGGCTTCTCCATCATCAATG
GTTCCCCCAGGTTTCAACAATGGTTTTATTCAAAACTGTAACTATACCAA
CTACTCAAACAAAGCTAAGGGCCTTGGTAACCCCCTATTGAAGGGAAAAA
AGCATTTAAAAAAAACATGAGTATGCGAGGGCCTTCTCCTCGGAAAACTC
CTCTGCTGTCAAATCCAACTTCTTCCTTAAAAATTCATCAATGCTGAATC
CTTGAACAATTGTCCATTCCCCGTTGCGGCAGGTTACTGGGAATGAATAA
ATGACCCCAGCTGGTACATTGTATGAACCATCAAAATATACCCCCATGGA
AACCCAGGTGCCCTCAGGAGTTCCAAAAACCCAATCAC
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