CF835868

Overview
NameCF835868
Unique NameCF835868
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_PSYA2 (Malate dehydrogenase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=mdh PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.392e-15
Identity = 35/68 (51.47%), Postives = 46/68 (67.65%), Query Frame = -3
Query:  283 WVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDE-FLRKKLDLTAEEFSEEK 483
            WV GT E  WVSMGVY +G Y +  G+IYSFP TC NG+W+IV G  +   F ++K+  T +E SEE+
Sbjct:  254 WVLGTDENDWVSMGVYSNGEYGIAKGLIYSFPCTCTNGDWSIVDGVDVSSAFSKEKMAATEQELSEER 321          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_POLSQ (Malate dehydrogenase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.429e-15
Identity = 36/69 (52.17%), Postives = 47/69 (68.12%), Query Frame = -3
Query:  280 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEKA 486
            DWV GT  G WV+MG+   G Y +PA VIY FPVTC NGE+ +++G  IDEF R+++  T  E  EE+A
Sbjct:  255 DWVLGT-NGKWVTMGIPSKGEYGIPAEVIYGFPVTCENGEYKMIEGLEIDEFSRERMTHTLNELLEEQA 322          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDHC_XENTR (Malate dehydrogenase, cytoplasmic OS=Xenopus tropicalis GN=mdh1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.429e-15
Identity = 38/69 (55.07%), Postives = 51/69 (73.91%), Query Frame = -3
Query:  274 FGTPEGTWVSMGVYFDG-SYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEKALA 477
            FGTP+G +VSMGV  DG SY +P  ++YSFP+T +N  W IV+G  I++F R+K+DLTA+E  EEK  A
Sbjct:  259 FGTPDGQFVSMGVISDGNSYGIPEDLMYSFPLTIKNKTWKIVEGLPINDFSREKMDLTAKELHEEKETA 327          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_NITEC (Malate dehydrogenase OS=Nitrosomonas eutropha (strain C91) GN=mdh PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.785e-15
Identity = 34/67 (50.75%), Postives = 44/67 (65.67%), Query Frame = -3
Query:  286 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEE 486
            +W FGT +G W +MG+  DGSY +P GVIY FPV C+NG   IVQG  I+ F R +LD    E ++E
Sbjct:  252 NWFFGTADGDWTTMGILSDGSYEIPEGVIYGFPVICKNGMREIVQGLEINPFSRTRLDAAYNELTQE 318          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_STRAW (Malate dehydrogenase OS=Streptomyces avermitilis GN=mdh PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.556e-15
Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = -3
Query:  283 WVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 483
            WV GT +G W SMG+  DGSY VP G+I SFPVT ++G + IVQG  I+EF R ++D + +E  EE+
Sbjct:  254 WVNGTADGDWTSMGIPSDGSYGVPEGLISSFPVTTKDGRYEIVQGLEINEFSRARIDASVKELEEER 320          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_BURXL (Malate dehydrogenase OS=Burkholderia xenovorans (strain LB400) GN=mdh PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.556e-15
Identity = 36/68 (52.94%), Postives = 46/68 (67.65%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DWV GT  G WV+MG+  DGSY +P  +IY  PVTC NGE+  V+G  ID F R+K+D T +E  EE+
Sbjct:  253 DWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVTCENGEYKRVEGLEIDAFSREKMDGTLQELLEER 319          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_BURM1 (Malate dehydrogenase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=mdh PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.556e-15
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DWV GT  G WV+MG+  DGSY +P  +IY  PVTC NGE+  V+G  ID F R+K+D T  E  EE+
Sbjct:  253 DWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVTCENGEYKRVEGLEIDAFSREKMDATLAELLEER 319          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_BORA1 (Malate dehydrogenase OS=Bordetella avium (strain 197N) GN=mdh PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.556e-15
Identity = 34/68 (50.00%), Postives = 48/68 (70.59%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DWV G+  G WV+MG+  DGSY +P G+IY FPVT  NGE+T+V+   +D F R+++D T +E  EE+
Sbjct:  255 DWVLGS-NGKWVTMGIPSDGSYGIPEGIIYGFPVTTANGEYTMVKDLEVDAFSRERMDFTLKELLEER 321          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_AQUAR (Malate dehydrogenase OS=Aquaspirillum arcticum GN=mdh PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 7.556e-15
Identity = 36/68 (52.94%), Postives = 48/68 (70.59%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DWV GT  G W +MG+  DGSY +P GVI+ FPVT  NGE+ IVQG SID F ++++++T  E  EE+
Sbjct:  255 DWVLGTA-GKWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYKIVQGLSIDAFSQERINVTLNELLEEQ 321          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_DECAR (Malate dehydrogenase OS=Dechloromonas aromatica (strain RCB) GN=mdh PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.868e-15
Identity = 32/67 (47.76%), Postives = 50/67 (74.63%), Query Frame = -3
Query:  286 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEE 486
            DWV G+ E  WV+MGV  DGSY +PAG+++ FP  C+ G+++I+QG  IDE+ R+K++ T +E ++E
Sbjct:  256 DWVLGSDE--WVTMGVPSDGSYGIPAGIVFGFPCECKGGKFSIIQGLEIDEYSREKINFTLKELTDE 320          
The following BLAST results are available for this feature:
BLAST of CF835868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
MDH_PSYA23.392e-1551.47Malate dehydrogenase OS=Psychrobacter arcticus (st... [more]
MDH_POLSQ4.429e-1552.17Malate dehydrogenase OS=Polynucleobacter sp. (stra... [more]
MDHC_XENTR4.429e-1555.07Malate dehydrogenase, cytoplasmic OS=Xenopus tropi... [more]
MDH_NITEC5.785e-1550.75Malate dehydrogenase OS=Nitrosomonas eutropha (str... [more]
MDH_STRAW7.556e-1552.24Malate dehydrogenase OS=Streptomyces avermitilis G... [more]
MDH_BURXL7.556e-1552.94Malate dehydrogenase OS=Burkholderia xenovorans (s... [more]
MDH_BURM17.556e-1552.94Malate dehydrogenase OS=Burkholderia multivorans (... [more]
MDH_BORA17.556e-1550.00Malate dehydrogenase OS=Bordetella avium (strain 1... [more]
MDH_AQUAR7.556e-1552.94Malate dehydrogenase OS=Aquaspirillum arcticum GN=... [more]
MDH_DECAR9.868e-1547.76Malate dehydrogenase OS=Dechloromonas aromatica (s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02A16_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835868 ID=CF835868; Name=CF835868; organism=Citrus sinensis; type=EST; length=488bp
AAAAAAAAAATTGTTATTGATAGTTTGATACATCCTTCAAAAGGGGCCTT
TAATATCCATTTATCCAGGAAAAGAAACAAAACTCCAAAATCCCGATATT
CAAATGCAAAAATACCAACATAAAATGGAAAGGCTTCTCCATCATCAATG
GTTCCCCCAGGTTTCAACAATGGTTTTATTCAAAACTGTAACTATACCAA
CTACTCAAACAAAGCTAAGGGCCTTGGTAACCCCCTATTGAAGGGAAAAA
AGCATTTAAAAAAAACATGAGTATGCGAGGGCCTTCTCCTCGGAAAACTC
CTCTGCTGTCAAATCCAACTTCTTCCTTAAAAATTCATCAATGCTGAATC
CTTGAACAATTGTCCATTCCCCGTTGCGGCAGGTTACTGGGAATGAATAA
ATGACCCCAGCTGGTACATTGTATGAACCATCAAAATATACCCCCATGGA
AACCCAGGTGCCCTCAGGAGTTCCAAAAACCCAATCAC
back to top