CF835868

Overview
NameCF835868
Unique NameCF835868
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_POLNS (Malate dehydrogenase OS=Polynucleobacter necessarius (strain STIR1) GN=mdh PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.289e-14
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = -3
Query:  280 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEKA 486
            DWV GT  G WV+MG+   G Y++PA VIY FPV C NGE+ +++G  IDEF R+++  T  E  EE+A
Sbjct:  255 DWVLGT-NGKWVTMGIPSKGEYDIPAEVIYGFPVVCENGEYKMIEGLEIDEFSRERMTHTLNELLEEQA 322          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_HERAR (Malate dehydrogenase OS=Herminiimonas arsenicoxydans GN=mdh PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.289e-14
Identity = 35/68 (51.47%), Postives = 48/68 (70.59%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DWV GT  G WV+MG+  DGSY +P   ++ FPVT  NGE+ IVQG  ID F +++++LT +E SEE+
Sbjct:  255 DWVLGT-NGKWVTMGIPSDGSYGIPKDTMFGFPVTTENGEYKIVQGLEIDAFSQERINLTLKELSEER 321          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_FRAAA (Malate dehydrogenase OS=Frankia alni (strain ACN14a) GN=mdh PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.289e-14
Identity = 35/67 (52.24%), Postives = 45/67 (67.16%), Query Frame = -3
Query:  283 WVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 483
            WV GTPEG W S  +  DGSY VP G+I SFPVT   G++ IVQG  +D F R+K+D +  E +EE+
Sbjct:  254 WVNGTPEGDWTSAAIPSDGSYGVPEGLISSFPVTAAGGKFEIVQGLELDAFSREKIDASVRELAEER 320          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_BURPP (Malate dehydrogenase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=mdh PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.289e-14
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DWV GT  G WV+MG+  DGSY +P  +IY  PVTC NGE+  V+G  ID F R+K+D T  E  EE+
Sbjct:  253 DWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVTCENGEYKRVEGLEIDAFSREKMDGTLNELLEER 319          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_XANC5 (Malate dehydrogenase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=mdh PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.683e-14
Identity = 36/69 (52.17%), Postives = 48/69 (69.57%), Query Frame = -3
Query:  280 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEKA 486
            DWV GT  G WV+MGV  DGSY +P GV++ FPVT  NG++TIV+   ID+F +K +D T  E  EE++
Sbjct:  254 DWVLGT-NGKWVTMGVPSDGSYGIPEGVMFGFPVTTENGKYTIVKDLPIDDFSQKYIDKTLAELEEERS 321          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_XANAC (Malate dehydrogenase OS=Xanthomonas axonopodis pv. citri GN=mdh PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.683e-14
Identity = 36/69 (52.17%), Postives = 48/69 (69.57%), Query Frame = -3
Query:  280 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEKA 486
            DWV GT  G WV+MGV  DGSY +P GV++ FPVT  NG++TIV+   ID+F +K +D T  E  EE++
Sbjct:  254 DWVLGT-SGKWVTMGVPSDGSYGIPEGVMFGFPVTTENGKYTIVKDLPIDDFSQKYIDKTLAELEEERS 321          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_PSYWF (Malate dehydrogenase OS=Psychrobacter sp. (strain PRwf-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.683e-14
Identity = 34/68 (50.00%), Postives = 45/68 (66.18%), Query Frame = -3
Query:  283 WVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGF-SIDEFLRKKLDLTAEEFSEEK 483
            W  GT E  WVSMGVY  G Y +  G+IYSFP TC NG+W IV+G  +  +F ++K+  T +E SEE+
Sbjct:  252 WALGTDENDWVSMGVYSQGEYGIAKGLIYSFPCTCSNGDWKIVEGLDTSSDFSQEKMKATEQELSEER 319          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_BURCJ (Malate dehydrogenase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=mdh PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.683e-14
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DWV GT  G WV+MG+  DGSY +P  +IY  PVTC NGE+  V+G  ID F R+K+D T  E  EE+
Sbjct:  253 DWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVTCENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_BURCH (Malate dehydrogenase OS=Burkholderia cenocepacia (strain HI2424) GN=mdh PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.683e-14
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DWV GT  G WV+MG+  DGSY +P  +IY  PVTC NGE+  V+G  ID F R+K+D T  E  EE+
Sbjct:  253 DWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVTCENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_BURCC (Malate dehydrogenase OS=Burkholderia cenocepacia (strain MC0-3) GN=mdh PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.683e-14
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DWV GT  G WV+MG+  DGSY +P  +IY  PVTC NGE+  V+G  ID F R+K+D T  E  EE+
Sbjct:  253 DWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVTCENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          
The following BLAST results are available for this feature:
BLAST of CF835868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
MDH_POLNS1.289e-1450.72Malate dehydrogenase OS=Polynucleobacter necessari... [more]
MDH_HERAR1.289e-1451.47Malate dehydrogenase OS=Herminiimonas arsenicoxyda... [more]
MDH_FRAAA1.289e-1452.24Malate dehydrogenase OS=Frankia alni (strain ACN14... [more]
MDH_BURPP1.289e-1452.94Malate dehydrogenase OS=Burkholderia phytofirmans ... [more]
MDH_XANC51.683e-1452.17Malate dehydrogenase OS=Xanthomonas campestris pv.... [more]
MDH_XANAC1.683e-1452.17Malate dehydrogenase OS=Xanthomonas axonopodis pv.... [more]
MDH_PSYWF1.683e-1450.00Malate dehydrogenase OS=Psychrobacter sp. (strain ... [more]
MDH_BURCJ1.683e-1452.94Malate dehydrogenase OS=Burkholderia cepacia (stra... [more]
MDH_BURCH1.683e-1452.94Malate dehydrogenase OS=Burkholderia cenocepacia (... [more]
MDH_BURCC1.683e-1452.94Malate dehydrogenase OS=Burkholderia cenocepacia (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A16_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835868 ID=CF835868; Name=CF835868; organism=Citrus sinensis; type=EST; length=488bp
AAAAAAAAAATTGTTATTGATAGTTTGATACATCCTTCAAAAGGGGCCTT
TAATATCCATTTATCCAGGAAAAGAAACAAAACTCCAAAATCCCGATATT
CAAATGCAAAAATACCAACATAAAATGGAAAGGCTTCTCCATCATCAATG
GTTCCCCCAGGTTTCAACAATGGTTTTATTCAAAACTGTAACTATACCAA
CTACTCAAACAAAGCTAAGGGCCTTGGTAACCCCCTATTGAAGGGAAAAA
AGCATTTAAAAAAAACATGAGTATGCGAGGGCCTTCTCCTCGGAAAACTC
CTCTGCTGTCAAATCCAACTTCTTCCTTAAAAATTCATCAATGCTGAATC
CTTGAACAATTGTCCATTCCCCGTTGCGGCAGGTTACTGGGAATGAATAA
ATGACCCCAGCTGGTACATTGTATGAACCATCAAAATATACCCCCATGGA
AACCCAGGTGCCCTCAGGAGTTCCAAAAACCCAATCAC
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