CF835868

Overview
NameCF835868
Unique NameCF835868
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_BURCA (Malate dehydrogenase OS=Burkholderia cenocepacia (strain AU 1054) GN=mdh PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.683e-14
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DWV GT  G WV+MG+  DGSY +P  +IY  PVTC NGE+  V+G  ID F R+K+D T  E  EE+
Sbjct:  253 DWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVTCENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH2_BURVG (Malate dehydrogenase 2 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=mdh2 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.683e-14
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DWV GT  G WV+MG+  DGSY +P  +IY  PVTC NGE+  V+G  ID F R+K+D T  E  EE+
Sbjct:  253 DWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVTCENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH1_BURTA (Malate dehydrogenase 1 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=mdh1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.683e-14
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DWV GT  G WV+MG+  DGSY +P  +IY  PVTC NGE+  V+G  ID F R+K+D T  E  EE+
Sbjct:  253 DWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVTCENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_XANCP (Malate dehydrogenase OS=Xanthomonas campestris pv. campestris GN=mdh PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.871e-14
Identity = 35/69 (50.72%), Postives = 48/69 (69.57%), Query Frame = -3
Query:  280 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEKA 486
            DWV G+  G WV+MGV  DGSY +P GVI+ FPVT  NG++T+V+   ID+F +K +D T  E  EE++
Sbjct:  254 DWVLGS-NGKWVTMGVPSDGSYGIPEGVIFGFPVTTENGQYTLVKDLPIDDFSQKYIDKTLAELEEERS 321          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_XANCB (Malate dehydrogenase OS=Xanthomonas campestris pv. campestris (strain B100) GN=mdh PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.871e-14
Identity = 35/69 (50.72%), Postives = 48/69 (69.57%), Query Frame = -3
Query:  280 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEKA 486
            DWV G+  G WV+MGV  DGSY +P GVI+ FPVT  NG++T+V+   ID+F +K +D T  E  EE++
Sbjct:  254 DWVLGS-NGKWVTMGVPSDGSYGIPEGVIFGFPVTTENGQYTLVKDLPIDDFSQKYIDKTLAELEEERS 321          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_XANC8 (Malate dehydrogenase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=mdh PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.871e-14
Identity = 35/69 (50.72%), Postives = 48/69 (69.57%), Query Frame = -3
Query:  280 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEKA 486
            DWV G+  G WV+MGV  DGSY +P GVI+ FPVT  NG++T+V+   ID+F +K +D T  E  EE++
Sbjct:  254 DWVLGS-NGKWVTMGVPSDGSYGIPEGVIFGFPVTTENGQYTLVKDLPIDDFSQKYIDKTLAELEEERS 321          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_JANMA (Malate dehydrogenase OS=Janthinobacterium sp. (strain Marseille) GN=mdh PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.871e-14
Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DWV GT  G WV+MG+  DGSY +P   I+ FPVT  NGE+ IVQG  ID F +++++LT +E  EE+
Sbjct:  255 DWVLGT-NGKWVTMGIPSDGSYGIPKDTIFGFPVTVENGEYKIVQGLEIDAFSQERINLTLKELLEER 321          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_BORPD (Malate dehydrogenase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=mdh PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.871e-14
Identity = 35/68 (51.47%), Postives = 46/68 (67.65%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DWV G+  G WV+MG+  DGSY +P G+IY  PVT  NGE+  V+G  ID F R++LD T +E  EE+
Sbjct:  255 DWVLGS-NGKWVTMGIPSDGSYGIPEGIIYGVPVTTENGEYKRVEGLEIDAFSRERLDFTLKELLEER 321          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_BURCM (Malate dehydrogenase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=mdh PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.396e-14
Identity = 35/68 (51.47%), Postives = 44/68 (64.71%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DWV GT  G WV+MG+  DGSY +P  +IY  PV C NGE+  V+G  ID F R+K+D T  E  EE+
Sbjct:  253 DWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVVCENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_BORPE (Malate dehydrogenase OS=Bordetella pertussis GN=mdh PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.396e-14
Identity = 33/68 (48.53%), Postives = 46/68 (67.65%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DWV G+  G WV+MG+  DGSY +P G+IY FPV   NGE+ +++   ID F R++LD T +E  EE+
Sbjct:  255 DWVLGS-NGKWVTMGIPSDGSYGIPEGIIYGFPVVTENGEYKMIKDLEIDAFSRERLDFTLKELLEER 321          
The following BLAST results are available for this feature:
BLAST of CF835868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
MDH_BURCA1.683e-1452.94Malate dehydrogenase OS=Burkholderia cenocepacia (... [more]
MDH2_BURVG1.683e-1452.94Malate dehydrogenase 2 OS=Burkholderia vietnamiens... [more]
MDH1_BURTA1.683e-1452.94Malate dehydrogenase 1 OS=Burkholderia thailandens... [more]
MDH_XANCP2.871e-1450.72Malate dehydrogenase OS=Xanthomonas campestris pv.... [more]
MDH_XANCB2.871e-1450.72Malate dehydrogenase OS=Xanthomonas campestris pv.... [more]
MDH_XANC82.871e-1450.72Malate dehydrogenase OS=Xanthomonas campestris pv.... [more]
MDH_JANMA2.871e-1451.47Malate dehydrogenase OS=Janthinobacterium sp. (str... [more]
MDH_BORPD2.871e-1451.47Malate dehydrogenase OS=Bordetella petrii (strain ... [more]
MDH_BURCM6.396e-1451.47Malate dehydrogenase OS=Burkholderia ambifaria (st... [more]
MDH_BORPE6.396e-1448.53Malate dehydrogenase OS=Bordetella pertussis GN=md... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A16_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835868 ID=CF835868; Name=CF835868; organism=Citrus sinensis; type=EST; length=488bp
AAAAAAAAAATTGTTATTGATAGTTTGATACATCCTTCAAAAGGGGCCTT
TAATATCCATTTATCCAGGAAAAGAAACAAAACTCCAAAATCCCGATATT
CAAATGCAAAAATACCAACATAAAATGGAAAGGCTTCTCCATCATCAATG
GTTCCCCCAGGTTTCAACAATGGTTTTATTCAAAACTGTAACTATACCAA
CTACTCAAACAAAGCTAAGGGCCTTGGTAACCCCCTATTGAAGGGAAAAA
AGCATTTAAAAAAAACATGAGTATGCGAGGGCCTTCTCCTCGGAAAACTC
CTCTGCTGTCAAATCCAACTTCTTCCTTAAAAATTCATCAATGCTGAATC
CTTGAACAATTGTCCATTCCCCGTTGCGGCAGGTTACTGGGAATGAATAA
ATGACCCCAGCTGGTACATTGTATGAACCATCAAAATATACCCCCATGGA
AACCCAGGTGCCCTCAGGAGTTCCAAAAACCCAATCAC
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