CF835868

Overview
NameCF835868
Unique NameCF835868
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_BORPA (Malate dehydrogenase OS=Bordetella parapertussis GN=mdh PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.396e-14
Identity = 33/68 (48.53%), Postives = 46/68 (67.65%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DWV G+  G WV+MG+  DGSY +P G+IY FPV   NGE+ +++   ID F R++LD T +E  EE+
Sbjct:  255 DWVLGS-NGKWVTMGIPSDGSYGIPEGIIYGFPVVTENGEYKMIKDLEIDAFSRERLDFTLKELLEER 321          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_BORBR (Malate dehydrogenase OS=Bordetella bronchiseptica GN=mdh PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.396e-14
Identity = 33/68 (48.53%), Postives = 46/68 (67.65%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DWV G+  G WV+MG+  DGSY +P G+IY FPV   NGE+ +++   ID F R++LD T +E  EE+
Sbjct:  255 DWVLGS-NGKWVTMGIPSDGSYGIPEGIIYGFPVVTENGEYKMIKDLEIDAFSRERLDFTLKELLEER 321          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDHC_CHICK (Malate dehydrogenase, cytoplasmic OS=Gallus gallus GN=MDH1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.396e-14
Identity = 37/69 (53.62%), Postives = 49/69 (71.01%), Query Frame = -3
Query:  274 FGTPEGTWVSMGVYFDG-SYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEKALA 477
            FGTP G +VSMGV  DG SY VP  ++YSFPV  ++  W  V+G  I++F R+K+DLTA+E +EEK  A
Sbjct:  259 FGTPAGEFVSMGVISDGNSYGVPEDLLYSFPVVIKDKTWKFVEGLPINDFSREKMDLTAKELTEEKETA 327          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_FRASC (Malate dehydrogenase OS=Frankia sp. (strain CcI3) GN=mdh PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.354e-14
Identity = 34/67 (50.75%), Postives = 43/67 (64.18%), Query Frame = -3
Query:  283 WVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 483
            WV GTP G W S  +  DGSY VP G+I SFPVT   G + IVQG  +D F R+K+D +  E +EE+
Sbjct:  254 WVNGTPAGDWTSAAIPSDGSYGVPEGLISSFPVTASGGRFEIVQGLELDAFSREKIDASVRELAEER 320          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_BURS3 (Malate dehydrogenase OS=Burkholderia sp. (strain 383) GN=mdh PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.354e-14
Identity = 34/68 (50.00%), Postives = 44/68 (64.71%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DWV GT  G WV+MG+  DGSY +P  +IY  PV C NGE+  ++G  ID F R+K+D T  E  EE+
Sbjct:  253 DWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVVCENGEYKRIEGLEIDAFSREKMDGTLAELLEER 319          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_BURPS (Malate dehydrogenase OS=Burkholderia pseudomallei GN=mdh PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 8.354e-14
Identity = 35/68 (51.47%), Postives = 44/68 (64.71%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DWV GT  G WV+MG+  DGSY +P  +IY  PV C NGE+  V+G  ID F R+K+D T  E  EE+
Sbjct:  253 DWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_BURP6 (Malate dehydrogenase OS=Burkholderia pseudomallei (strain 668) GN=mdh PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.354e-14
Identity = 35/68 (51.47%), Postives = 44/68 (64.71%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DWV GT  G WV+MG+  DGSY +P  +IY  PV C NGE+  V+G  ID F R+K+D T  E  EE+
Sbjct:  253 DWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_BURP1 (Malate dehydrogenase OS=Burkholderia pseudomallei (strain 1710b) GN=mdh PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.354e-14
Identity = 35/68 (51.47%), Postives = 44/68 (64.71%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DWV GT  G WV+MG+  DGSY +P  +IY  PV C NGE+  V+G  ID F R+K+D T  E  EE+
Sbjct:  253 DWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_BURP0 (Malate dehydrogenase OS=Burkholderia pseudomallei (strain 1106a) GN=mdh PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.354e-14
Identity = 35/68 (51.47%), Postives = 44/68 (64.71%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DWV GT  G WV+MG+  DGSY +P  +IY  PV C NGE+  V+G  ID F R+K+D T  E  EE+
Sbjct:  253 DWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          
BLAST of CF835868 vs. ExPASy Swiss-Prot
Match: MDH_BURMS (Malate dehydrogenase OS=Burkholderia mallei (strain SAVP1) GN=mdh PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.354e-14
Identity = 35/68 (51.47%), Postives = 44/68 (64.71%), Query Frame = -3
Query:  283 DWVFGTPEGTWVSMGVYFDGSYNVPAGVIYSFPVTCRNGEWTIVQGFSIDEFLRKKLDLTAEEFSEEK 486
            DWV GT  G WV+MG+  DGSY +P  +IY  PV C NGE+  V+G  ID F R+K+D T  E  EE+
Sbjct:  253 DWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          
The following BLAST results are available for this feature:
BLAST of CF835868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
MDH_BORPA6.396e-1448.53Malate dehydrogenase OS=Bordetella parapertussis G... [more]
MDH_BORBR6.396e-1448.53Malate dehydrogenase OS=Bordetella bronchiseptica ... [more]
MDHC_CHICK6.396e-1453.62Malate dehydrogenase, cytoplasmic OS=Gallus gallus... [more]
MDH_FRASC8.354e-1450.75Malate dehydrogenase OS=Frankia sp. (strain CcI3) ... [more]
MDH_BURS38.354e-1450.00Malate dehydrogenase OS=Burkholderia sp. (strain 3... [more]
MDH_BURPS8.354e-1451.47Malate dehydrogenase OS=Burkholderia pseudomallei ... [more]
MDH_BURP68.354e-1451.47Malate dehydrogenase OS=Burkholderia pseudomallei ... [more]
MDH_BURP18.354e-1451.47Malate dehydrogenase OS=Burkholderia pseudomallei ... [more]
MDH_BURP08.354e-1451.47Malate dehydrogenase OS=Burkholderia pseudomallei ... [more]
MDH_BURMS8.354e-1451.47Malate dehydrogenase OS=Burkholderia mallei (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A16_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835868 ID=CF835868; Name=CF835868; organism=Citrus sinensis; type=EST; length=488bp
AAAAAAAAAATTGTTATTGATAGTTTGATACATCCTTCAAAAGGGGCCTT
TAATATCCATTTATCCAGGAAAAGAAACAAAACTCCAAAATCCCGATATT
CAAATGCAAAAATACCAACATAAAATGGAAAGGCTTCTCCATCATCAATG
GTTCCCCCAGGTTTCAACAATGGTTTTATTCAAAACTGTAACTATACCAA
CTACTCAAACAAAGCTAAGGGCCTTGGTAACCCCCTATTGAAGGGAAAAA
AGCATTTAAAAAAAACATGAGTATGCGAGGGCCTTCTCCTCGGAAAACTC
CTCTGCTGTCAAATCCAACTTCTTCCTTAAAAATTCATCAATGCTGAATC
CTTGAACAATTGTCCATTCCCCGTTGCGGCAGGTTACTGGGAATGAATAA
ATGACCCCAGCTGGTACATTGTATGAACCATCAAAATATACCCCCATGGA
AACCCAGGTGCCCTCAGGAGTTCCAAAAACCCAATCAC
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