CF835880
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835880 vs. ExPASy Swiss-Prot
Match: EF1B2_ARATH (Elongation factor 1-beta 2 OS=Arabidopsis thaliana GN=At5g19510 PE=1 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 4.967e-43 Identity = 96/177 (54.24%), Postives = 109/177 (61.58%), Query Frame = -2 Query: 295 DDIKVYAAVLVKPADSFPNASRWYDSVSSHIAPSFPGKAVGVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNE 825 DD+KVYAAV VKP+D+FPNAS+WY+SV+S +A SFPGKAVGV+ D SVL+DVKPWDDETDMKKLEEAVR VEMPGLFWGASKLVPVGYGIKK+ IM TI+DDLVS D+LIE+ LT EP NE Sbjct: 35 DDVKVYAAVPVKPSDAFPNASKWYESVASQLAKSFPGKAVGVQFGGSAAAAPAVEAEAPAAAADDDDDMDLFGDETEEEKKAAEEREAAKKDTKKPKESGKSSVLMDVKPWDDETDMKKLEEAVRGVEMPGLFWGASKLVPVGYGIKKLTIMFTIVDDLVSPDNLIEDFLTSEPNNE 211
BLAST of CF835880 vs. ExPASy Swiss-Prot
Match: EF1B_ORYSJ (Elongation factor 1-beta OS=Oryza sativa subsp. japonica GN=Os07g0662500 PE=1 SV=3) HSP 1 Score: 171.014 bits (432), Expect = 7.172e-42 Identity = 96/180 (53.33%), Postives = 106/180 (58.89%), Query Frame = -2 Query: 286 DDIKVYAAVLVKPADSFPNASRWYDSVSSHIAPSFPGKAVGVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNETKQ 825 DDIKV+AAV KP FPNA+RWYD+V++ +A FPGKAVGV SVLLDVKPWDDETDMKKLEEAVRSV+M GL WGASKLVPVGYGIKK+QIM+TI+DDLVSVDSLIEEHLT EP NE Q Sbjct: 35 DDIKVFAAVPSKPGAEFPNAARWYDTVAAALASRFPGKAVGVNLPGGGAASSAAAAAPAAKDADEDDDDLDLFGDETEEDKKAADERAASKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEHLTEEPINEFVQ 214
BLAST of CF835880 vs. ExPASy Swiss-Prot
Match: EF1B1_ARATH (Elongation factor 1-beta 1 OS=Arabidopsis thaliana GN=At5g12110 PE=2 SV=2) HSP 1 Score: 133.65 bits (335), Expect = 1.269e-30 Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = -2 Query: 295 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNE 516 VLL+VKPWDDETDMKKLEEAVRSV+MPGL WGASKLVPVGYGIKK+ IMMTI+DDLVSVD+LIE+HLT EP NE Sbjct: 142 VLLEVKPWDDETDMKKLEEAVRSVQMPGLTWGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDHLTSEPNNE 215 HSP 2 Score: 74.3294 bits (181), Expect = 9.136e-13 Identity = 33/43 (76.74%), Postives = 37/43 (86.05%), Query Frame = -2 Query: 697 DDIKVYAAVLVKPADSFPNASRWYDSVSSHIAPSFPGKAVGVR 825 DD+KVYAAVL P D FPNAS+WYDSV+SH+A SFPGKA GVR Sbjct: 35 DDVKVYAAVLENPGDGFPNASKWYDSVASHLAKSFPGKADGVR 77
BLAST of CF835880 vs. ExPASy Swiss-Prot
Match: EF1D2_ARATH (Elongation factor 1-delta 2 OS=Arabidopsis thaliana GN=At2g18110 PE=2 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 3.692e-30 Identity = 61/77 (79.22%), Postives = 70/77 (90.91%), Query Frame = -2 Query: 286 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNETKQ 516 VL+D+KPWDDETDMKKLEEAVRS++M GLFWGASKLVPVGYGIKK+ IM TI+DDLVS+D++IEE LTVEP NE Q Sbjct: 145 VLMDIKPWDDETDMKKLEEAVRSIQMEGLFWGASKLVPVGYGIKKLHIMCTIVDDLVSIDTMIEEQLTVEPINEYVQ 221
BLAST of CF835880 vs. ExPASy Swiss-Prot
Match: EF1D1_ARATH (Elongation factor 1-delta 1 OS=Arabidopsis thaliana GN=At1g30230 PE=2 SV=2) HSP 1 Score: 131.724 bits (330), Expect = 4.822e-30 Identity = 60/77 (77.92%), Postives = 71/77 (92.21%), Query Frame = -2 Query: 286 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNETKQ 516 VL+D+KPWDDETDMKKLEEAV+S++M GLFWGASKLVPVGYGIKK+QI+ TI+DDLVS+D++IEE LTVEP NE Q Sbjct: 145 VLIDIKPWDDETDMKKLEEAVKSIQMEGLFWGASKLVPVGYGIKKLQILCTIVDDLVSIDTMIEEQLTVEPINEYVQ 221
BLAST of CF835880 vs. ExPASy Swiss-Prot
Match: EF1D2_ORYSJ (Elongation factor 1-delta 2 OS=Oryza sativa subsp. japonica GN=Os03g0406200 PE=2 SV=3) HSP 1 Score: 127.872 bits (320), Expect = 6.963e-29 Identity = 61/74 (82.43%), Postives = 67/74 (90.54%), Query Frame = -2 Query: 295 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNE 516 VLLDVKPWDDETDM KLEEAVR+V+M GL WGASKLVPVGYGIKK+QIMMTI+DDLVSVDSLIE++ EP NE Sbjct: 140 VLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANE 213
BLAST of CF835880 vs. ExPASy Swiss-Prot
Match: EF1D1_ORYSJ (Elongation factor 1-delta 1 OS=Oryza sativa subsp. japonica GN=Os07g0614500 PE=2 SV=3) HSP 1 Score: 127.872 bits (320), Expect = 6.963e-29 Identity = 61/74 (82.43%), Postives = 67/74 (90.54%), Query Frame = -2 Query: 295 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNE 516 VLLDVKPWDDETDM KLEEAVR+V+M GL WGASKLVPVGYGIKK+QIMMTI+DDLVSVDSLIE++ EP NE Sbjct: 143 VLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANE 216
BLAST of CF835880 vs. ExPASy Swiss-Prot
Match: EF1D_PIMBR (Elongation factor 1-delta OS=Pimpinella brachycarpa PE=2 SV=3) HSP 1 Score: 126.716 bits (317), Expect = 1.551e-28 Identity = 59/74 (79.73%), Postives = 67/74 (90.54%), Query Frame = -2 Query: 295 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNE 516 VLLDVKPWDDETDM KLEEAVRS++M GL WGASKLV VGYGIKK+QIM+TI+DDLVSVD L+E++LT EP NE Sbjct: 140 VLLDVKPWDDETDMTKLEEAVRSIKMDGLLWGASKLVAVGYGIKKLQIMLTIVDDLVSVDDLVEDYLTAEPANE 213
BLAST of CF835880 vs. ExPASy Swiss-Prot
Match: EF1D_BETVU (Elongation factor 1-delta OS=Beta vulgaris PE=2 SV=3) HSP 1 Score: 126.331 bits (316), Expect = 2.026e-28 Identity = 63/77 (81.82%), Postives = 69/77 (89.61%), Query Frame = -2 Query: 286 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNETKQ 516 VLLDVKPWDDETDMKKLEEAVRSV+ GL GASKLVPVGYGIKK+ IMMTI+DDLVSVD+LIE++LTVEP NE Q Sbjct: 145 VLLDVKPWDDETDMKKLEEAVRSVQQEGLTLGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDYLTVEPINEYVQ 221
BLAST of CF835880 vs. ExPASy Swiss-Prot
Match: EF1B_WHEAT (Elongation factor 1-beta OS=Triticum aestivum PE=1 SV=2) HSP 1 Score: 112.079 bits (279), Expect = 3.954e-24 Identity = 57/77 (74.03%), Postives = 63/77 (81.82%), Query Frame = -2 Query: 286 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNETKQ 516 VL+D+KPWDDETDMKKLEEAVRSV+M GL WGASKL+PVGYGIKK+QIM+TIIDDL S IEE L P NE Q Sbjct: 132 VLMDIKPWDDETDMKKLEEAVRSVQMEGLTWGASKLMPVGYGIKKLQIMLTIIDDLASTP--IEEVLCEAPINEYVQ 206 The following BLAST results are available for this feature:
BLAST of CF835880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 37
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF835880 ID=CF835880; Name=CF835880; organism=Citrus sinensis; type=EST; length=826bpback to top |