CF836005

Overview
NameCF836005
Unique NameCF836005
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length284
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS22B_YEAST (40S ribosomal protein S22-B OS=Saccharomyces cerevisiae GN=RPS22B PE=1 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 1.390e-25
Identity = 56/70 (80.00%), Postives = 63/70 (90.00%), Query Frame = 3
Query:   75 SVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284
            SVL DAL ++ NAEK GKRQV++ PSSKVIIKFL VMQKHGYIGEFEY+DDHR+GKIVV+LNGRLN CGV
Sbjct:    5 SVLADALNAINNAEKTGKRQVLLRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGV 74          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS22_CANGA (40S ribosomal protein S22 OS=Candida glabrata GN=RPS22 PE=3 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 1.815e-25
Identity = 56/70 (80.00%), Postives = 63/70 (90.00%), Query Frame = 3
Query:   75 SVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284
            SVL DAL ++ NAEK GKRQV+I PSSKVIIKFL VMQ+HGYIGEFEY+DDHR+GKIVV+LNGRLN CGV
Sbjct:    5 SVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQRHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGV 74          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS22_ASHGO (40S ribosomal protein S22 OS=Ashbya gossypii GN=RPS22A PE=3 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 2.371e-25
Identity = 57/74 (77.03%), Postives = 63/74 (85.14%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284
            M   SVL DAL ++ NAEK GKRQV+I PSSKVIIKFL VMQKHGYIGEFEY+DDHR+GKIVV+L GRLN CGV
Sbjct:    1 MTRTSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLTGRLNKCGV 74          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS22_AGABI (40S ribosomal protein S22 OS=Agaricus bisporus GN=rps22 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.898e-25
Identity = 53/74 (71.62%), Postives = 64/74 (86.49%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284
            MV +SVLND LKS+ NA +RGKRQV++ PSSKV++KFL VMQ+HGYIGEFE +DDHR GKI+V+LNGRLN  GV
Sbjct:    1 MVRISVLNDCLKSICNASRRGKRQVIVRPSSKVVVKFLSVMQRHGYIGEFEIIDDHRGGKIIVQLNGRLNKTGV 74          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS15A_RAT (40S ribosomal protein S15a OS=Rattus norvegicus GN=Rps15a PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 6.898e-25
Identity = 56/74 (75.68%), Postives = 63/74 (85.14%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284
            MV ++VL DALKS+ NAEKRGKRQV+I P SKVI++FL VM KHGYIGEFE +DDHRAGKIVV L GRLN CGV
Sbjct:    1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGV 74          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS15A_PONAB (40S ribosomal protein S15a OS=Pongo abelii GN=RPS15A PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.898e-25
Identity = 56/74 (75.68%), Postives = 63/74 (85.14%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284
            MV ++VL DALKS+ NAEKRGKRQV+I P SKVI++FL VM KHGYIGEFE +DDHRAGKIVV L GRLN CGV
Sbjct:    1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGV 74          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS15A_MOUSE (40S ribosomal protein S15a OS=Mus musculus GN=Rps15a PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 6.898e-25
Identity = 56/74 (75.68%), Postives = 63/74 (85.14%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284
            MV ++VL DALKS+ NAEKRGKRQV+I P SKVI++FL VM KHGYIGEFE +DDHRAGKIVV L GRLN CGV
Sbjct:    1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGV 74          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS15A_HUMAN (40S ribosomal protein S15a OS=Homo sapiens GN=RPS15A PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 6.898e-25
Identity = 56/74 (75.68%), Postives = 63/74 (85.14%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284
            MV ++VL DALKS+ NAEKRGKRQV+I P SKVI++FL VM KHGYIGEFE +DDHRAGKIVV L GRLN CGV
Sbjct:    1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGV 74          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS15A_BOVIN (40S ribosomal protein S15a OS=Bos taurus GN=RPS15A PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.898e-25
Identity = 56/74 (75.68%), Postives = 63/74 (85.14%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284
            MV ++VL DALKS+ NAEKRGKRQV+I P SKVI++FL VM KHGYIGEFE +DDHRAGKIVV L GRLN CGV
Sbjct:    1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGV 74          
BLAST of CF836005 vs. ExPASy Swiss-Prot
Match: RS15A_DROYA (40S ribosomal protein S15a OS=Drosophila yakuba GN=RpS15Aa PE=2 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 2.621e-24
Identity = 56/74 (75.68%), Postives = 62/74 (83.78%), Query Frame = 3
Query:   63 MVIVSVLNDALKSMYNAEKRGKRQVMI*PSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLN*CGV 284
            MV ++VL DALK + NAEKRGKRQV++ P SKVIIKFL VM KHGYIGEFE VDDHR+GKIVV L GRLN CGV
Sbjct:    1 MVRMNVLADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGEFEIVDDHRSGKIVVNLTGRLNKCGV 74          
The following BLAST results are available for this feature:
BLAST of CF836005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RS22B_YEAST1.390e-2580.0040S ribosomal protein S22-B OS=Saccharomyces cerev... [more]
RS22_CANGA1.815e-2580.0040S ribosomal protein S22 OS=Candida glabrata GN=R... [more]
RS22_ASHGO2.371e-2577.0340S ribosomal protein S22 OS=Ashbya gossypii GN=RP... [more]
RS22_AGABI6.898e-2571.6240S ribosomal protein S22 OS=Agaricus bisporus GN=... [more]
RS15A_RAT6.898e-2575.6840S ribosomal protein S15a OS=Rattus norvegicus GN... [more]
RS15A_PONAB6.898e-2575.6840S ribosomal protein S15a OS=Pongo abelii GN=RPS1... [more]
RS15A_MOUSE6.898e-2575.6840S ribosomal protein S15a OS=Mus musculus GN=Rps1... [more]
RS15A_HUMAN6.898e-2575.6840S ribosomal protein S15a OS=Homo sapiens GN=RPS1... [more]
RS15A_BOVIN6.898e-2575.6840S ribosomal protein S15a OS=Bos taurus GN=RPS15A... [more]
RS15A_DROYA2.621e-2475.6840S ribosomal protein S15a OS=Drosophila yakuba GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E07_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836005 ID=CF836005; Name=CF836005; organism=Citrus sinensis; type=EST; length=284bp
CTTTTGCAGCTCACTTACTCTTTCAGAGGCGCCTCTCCCTGCTTTGATTT
GCCTTCGCAACAATGGTGATAGTTAGTGTTCTGAATGACGCTCTTAAGAG
CATGTATAATGCCGAGAAAAGGGGGAAGCGTCAGGTTATGATCTGACCAT
CCTCCAAGGTTATCATTAAGTTTCTTCTGGTGATGCAAAAGCACGGGTAC
ATTGGTGAGTTTGAGTATGTTGATGACCACAGAGCTGGTAAGATTGTGGT
TGAACTGAACGGAAGATTGAACTAATGTGGGGTT
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