CK934322

Overview
NameCK934322
Unique NameCK934322
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length344
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934322 vs. ExPASy Swiss-Prot
Match: SCAM1_ORYSI (Putative secretory carrier-associated membrane protein 1 OS=Oryza sativa subsp. indica GN=SCAMP1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.539e-36
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 1
Query:  163 WIKGGGVQIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYLIHIGFCIF 342
            W+KG GV+I+ LA IY + GVP +YVLWYRPLY AMRTDSALKF  FFL YL HI FC+F
Sbjct:  166 WVKGEGVKIWLLAIIYFISGVPGAYVLWYRPLYNAMRTDSALKFGLFFLVYLFHILFCVF 225          

HSP 2 Score: 78.9518 bits (193), Expect = 4.539e-36
Identity = 32/49 (65.31%), Postives = 41/49 (83.67%), Query Frame = 3
Query:    9 DDKNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAV 155
            ++KNWPPF P+IHHDI+ EIP H QR+QY+AFAS+ G+  CL +NVIAV
Sbjct:  114 EEKNWPPFLPLIHHDITNEIPSHLQRMQYVAFASFLGLACCLFWNVIAV 162          
BLAST of CK934322 vs. ExPASy Swiss-Prot
Match: SCAM5_ARATH (Secretory carrier-associated membrane protein 5 OS=Arabidopsis thaliana GN=SCAMP5 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.839e-34
Identity = 41/60 (68.33%), Postives = 47/60 (78.33%), Query Frame = 1
Query:  163 WIKGGGVQIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYLIHIGFCIF 342
            WIKG GV I+ LA IY + GVP  YVLWYRPLYRA R+DSA  F WFFLFY++HI FC+F
Sbjct:  151 WIKGEGVTIWLLAVIYFISGVPGGYVLWYRPLYRAFRSDSAFNFGWFFLFYMLHILFCLF 210          

HSP 2 Score: 71.633 bits (174), Expect = 1.839e-34
Identity = 30/47 (63.83%), Postives = 39/47 (82.98%), Query Frame = 3
Query:   15 KNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAV 155
            KNWP FFP+IHHDI+ EI +  QRLQY+AFA++ G+VL L +N+IAV
Sbjct:  101 KNWPTFFPLIHHDIANEILVRLQRLQYIAFATYLGLVLALFWNIIAV 147          
BLAST of CK934322 vs. ExPASy Swiss-Prot
Match: SCAM2_ARATH (Secretory carrier-associated membrane protein 2 OS=Arabidopsis thaliana GN=SCAMP2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.524e-33
Identity = 41/60 (68.33%), Postives = 45/60 (75.00%), Query Frame = 1
Query:  163 WIKGGGVQIFFLATIYALLGVPMSYVLWYRPLYRAMRTDSALKFSWFFLFYLIHIGFCIF 342
            WIKG G  I+ L+ IY L GVP +YVLWYRPLYRA RTDSALKF  FF FY+ HI FC F
Sbjct:  143 WIKGEGPTIWLLSIIYFLAGVPGAYVLWYRPLYRATRTDSALKFGAFFFFYVFHIAFCGF 202          

HSP 2 Score: 75.0998 bits (183), Expect = 1.524e-33
Identity = 29/49 (59.18%), Postives = 41/49 (83.67%), Query Frame = 3
Query:    9 DDKNWPPFFPIIHHDISKEIPIHAQRLQYLAFASWFGIVLCLVFNVIAV 155
            ++KNWP FFP+IHHDI  EIPIH Q++QY+AF +  G+V CL++N++AV
Sbjct:   91 EEKNWPEFFPLIHHDIPNEIPIHLQKIQYVAFTTLLGLVGCLLWNIVAV 139          
The following BLAST results are available for this feature:
BLAST of CK934322 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
SCAM1_ORYSI4.539e-3670.00Putative secretory carrier-associated membrane pro... [more]
SCAM5_ARATH1.839e-3468.33Secretory carrier-associated membrane protein 5 OS... [more]
SCAM2_ARATH1.524e-3368.33Secretory carrier-associated membrane protein 2 OS... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_E02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934322 ID=CK934322; Name=CK934322; organism=Citrus sinensis; type=EST; length=344bp
TTCCCACAGACGATAAAAATTGGCCACCTTTTTTTCCAATTATTCATCAT
GACATATCGAAGGAGATACCAATTCATGCTCAAAGGCTGCAGTATCTTGC
TTTTGCTAGTTGGTTTGGTATAGTTCTCTGTCTTGTATTCAATGTAATTG
CCGTGATTCTGTTGGATTAAAGGCGGTGGTGTCCAAATCTTTTTCCTTGC
AACAATTTATGCTTTGCTTGGAGTGCCTATGTCATATGTTCTATGGTACA
GGCCTCTTTATCGAGCAATGAGGACGGATAGTGCATTGAAGTTCAGCTGG
TTTTTCCTGTTCTACTTGATCCACATCGGTTTTTGTATCTTTGC
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