CK934406

Overview
NameCK934406
Unique NameCK934406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10949 contig Csv1_Contig10949:277..1074. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934406 vs. ExPASy Swiss-Prot
Match: SEC13_PICGU (Protein transport protein SEC13 OS=Pichia guilliermondii GN=SEC13 PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 6.558e-13
Identity = 69/251 (27.49%), Postives = 104/251 (41.43%), Query Frame = 2
Query:    5 FGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLHAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWTLN-IGRPYEVIAVATQ-KGIAIWHVGANPELDGRLSVEKVALLSGHGGEV-WQMEWDMSGTTLATTGSDGMVRLWQSNLNGVWD 748
            FG  +A    DG +L+W+E  + +    W +    +     V  V +        L+   SDG V V +  D              +   +  +F        S SW P   ++    FV G  SD    N +KVW  D + + ++  A+L   E  +D V  V W+ + + R Y  IA A+Q + + IWH       DG    +K  L      +V W+  W  SG  LA +G D  V LW+ NL G W+
Sbjct:   67 FGSILASCSYDGKVLVWKESPDRS----WSIISEHKVHQASVNSVSWAPHELGAVLLCTSSDGRVSVVDFND--------------DGTSTHIIFEAHKIGVNSASWAPVDTKSPVRRFVTG-GSD----NLAKVWSLDASKSTYVEEAKL---EGHTDWVRDVCWSPSALVRSY--IATASQDRTVLIWHQ------DGEGKWQKQKLTEELFPDVCWRCSWSFSGNILAVSGGDNKVSLWKENLQGKWE 283          
BLAST of CK934406 vs. ExPASy Swiss-Prot
Match: SEH1_SCHPO (Nucleoporin seh1 OS=Schizosaccharomyces pombe GN=seh1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.908e-12
Identity = 63/264 (23.86%), Postives = 115/264 (43.56%), Query Frame = 2
Query:    5 FGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLHAEFQNAIDSVTMFRK-ASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWTLNIGRPYEVIAVATQKG-IAIWHV--------------------GANPELDGRLSVEKVALLSGHGGEVWQMEWDMSGTTLATTGSDGMVRLWQSN 730
            FG  +A    D  + ++EE  ++ +   W          + VLD+ F       KL A  +D  +++YE ++P  L  W L  E        +   + A C++    W P +   Q     +G       +N + +++   +H +W  VAEL      +D +  + W  ++G  Y +IA A + G + I+ V                     +N  L+  L VE +     H  +VW+  ++++GT L+++G DG VRLW+++
Sbjct:   73 FGQVLAVCSLDRGVRIYEEQKKNFESKTWVEVAKLMDARSAVLDISFCPFQHGCKLAAVSADATLRIYEAMEPGNLTYWTLMNEIALMPSPPSRNEQPAFCVN----WCPSRWREQ--YIAVGC------MNDAYIYK-QNSHGKWKKVAELP---GHTDLIRDICWAPSMGSSYYLIATACKDGNVRIFKVETLCEEVFQEEEDAGNSMTEDSNFNLNS-LKVELIGEYDNHKCQVWRCRFNVTGTILSSSGDDGCVRLWKAS 319          
BLAST of CK934406 vs. ExPASy Swiss-Prot
Match: SEC13_PICST (Protein transport protein SEC13 OS=Pichia stipitis GN=SEC13 PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.255e-12
Identity = 70/257 (27.24%), Postives = 104/257 (40.47%), Query Frame = 2
Query:    5 FGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKN--WQLHAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSF-----VLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWTLN-IGRPYEVIAVATQ-KGIAIWHVGANPELDGRLSVEKVALLSGHGGEVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVWD 748
            FG  +A    DG  L+W+E  E  Q   W +          V  V +        L+ A SDG V V +  D     +  +  HA   N           S   A +S  P   +   +S       +   SD    N +K+W++D A+N ++  A L   E  +D V  VAW+ + + R Y  IA A+Q + + IW      +   +L  E            W+  W +SG  LA +G D  V LW+ NL G W+
Sbjct:   67 FGSILASCSFDGKALIWKEQPETQQ---WSIIAEHSVHQASVNSVSWAPHELGAVLLCASSDGKVSVVDFNDDGTTSHVVFDAHAIGAN-----------SASWAPLSSTPSPNQKDAASLKQQRRFVTCGSD----NLAKIWKYDAANNTYVEEARL---EGHTDWVRDVAWSPSMLVRTY--IATASQDRTVLIWTQDKAGKWQKQLLTE-----DKFPDVCWRCSWSLSGNILAVSGGDNKVSLWKENLQGKWE 295          
BLAST of CK934406 vs. ExPASy Swiss-Prot
Match: SEC13_COCIM (Protein transport protein SEC13 OS=Coccidioides immitis GN=SEC13 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.255e-12
Identity = 69/253 (27.27%), Postives = 108/253 (42.69%), Query Frame = 2
Query:    5 FGDAVACICSDGSLLLWEEIVEDAQP-LQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNW--QLHAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWTLNIGRPYEVIAVATQKGIAIWHVG-ANPELDGRLSVEKVALLSGHGGEVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVWDE 751
            FG  +A    DG +L+W E    A     W     F   +  V  V +        L  A SDGHV V E  D     +W  Q+       ++SV+ +  A+   + IS  P  G+ +   FV G  SD    N  K+W+++     +   A   + E  +  V  V+W+ +I     + + +  K + IW    +NP       +E  A+       VW++ W +SG  LA +G D  V LW+ NL G W++
Sbjct:   68 FGTILASSSYDGKVLIWREQSSAASTGSSWSRVFDFSLHTASVNMVSWAPHELGCVLACASSDGHVSVLEFRD----NSWTHQIFHAHGMGVNSVS-WAPAAAPGSVISATPSTGQIR--RFVTG-GSD----NLVKIWDYNPETKTY---ATSHVLEGHTGWVRDVSWSPSILSRSYIASASQDKTVRIWTSDPSNPNEWTSHQLEFDAV-------VWRVSWSLSGNILAVSGGDNKVSLWKENLKGQWEK 298          
BLAST of CK934406 vs. ExPASy Swiss-Prot
Match: SEC13_LODEL (Protein transport protein SEC13 OS=Lodderomyces elongisporus GN=SEC13 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.251e-12
Identity = 76/252 (30.16%), Postives = 109/252 (43.25%), Query Frame = 2
Query:    5 FGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKN--WQLHAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWT-LNIGRPYEVIAVATQK-GIAIWHVGANPELDGRLSVEKVALLSGHGGEVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVWD 748
            FG  +A    DG +L+W+E  +D Q  QW +          V  V +        L+   SDG V V +  D     +  +  HA   N+  S   F  AS  S+  + N  K   Q   FV    SD    N  K+W++D A   +   A+L   E  +D V  VAW+  N+ RPY  IA A+Q   + IW      + DG+   + +          W+  W +SG  LA +G D  V LW+ NL G W+
Sbjct:   67 FGSILASCSYDGKVLIWKE-QQDTQ--QWSIIAEHTIHQASVNSVSWAPHELGAVLLCTSSDGKVSVVDFNDDGTTSHVIFDAHAIGVNSA-SWAPFTAASSTSSKDA-NTLK---QHRRFVT-CGSD----NLVKIWKYDTALETYAEEAKL---EGHTDWVRDVAWSPSNLVRPY--IATASQDCTVLIW----TQDKDGKWQSQPLTE-EKFPDVCWRCSWSLSGNILAVSGGDNKVTLWKENLQGKWE 295          
BLAST of CK934406 vs. ExPASy Swiss-Prot
Match: SC131_CANGA (Protein transport protein SEC13-1 OS=Candida glabrata GN=SEC131 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.250e-12
Identity = 71/257 (27.63%), Postives = 110/257 (42.80%), Query Frame = 2
Query:    5 FGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD-----PLILKNWQLHAEFQNAIDSVTMFRKASCISASISW--NPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWTLNIGRPYEVIAVATQKGIAIWHVGAN--PELDGRLSVEKVALLSGHGGEVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVWD 748
            FG  +A    DG +++W+E  +     +W         +  V  VQ+        L+AA SDG V V E  +     PLI   +  HA   NA         AS   A++    NP +   +   FV G  +D    N  K+W ++     +L    L   E  SD V  VAW+ ++     + +V+  +   IW    N  P +  +L+ E+   +      +W+  W +SG  LA +G D  V LW+ NLNG W+
Sbjct:   66 FGTILASCSYDGKVIIWKEEND-----RWSQIAVHAVHTASVNSVQWAPHEYGALLLAASSDGKVSVVEFKENGTATPLI---FDAHAIGVNA---------ASWAPATVEGGNNPGEAPKEVRRFVTG-GAD----NLVKIWRYNPETQSYLVEDTL---EGHSDWVRDVAWSPSVLLRSYIASVSQDRTCNIWTQEDNTGPWVKTQLTPEEFPDV------LWRASWSLSGNILAISGGDNKVTLWKENLNGKWE 291          
BLAST of CK934406 vs. ExPASy Swiss-Prot
Match: SEC13_MAGGR (Protein transport protein SEC13 OS=Magnaporthe grisea GN=SEC13 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.237e-11
Identity = 63/249 (25.30%), Postives = 102/249 (40.96%), Query Frame = 2
Query:    5 FGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLI-LKNWQLHAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWTLNIGRPYEVIAVATQKGIAIWHV-GANPELDGRLSVEKVALLSGHGGEVWQMEWDMSGTTLATTGSDGMVRLWQSNLNGVW 745
            +G+ +A    DG + +W E     Q   W+    F      V  V +    +   L  A SDGHV V E  D     + +  H +  N++         S IS + +   Q+       FV G  SD    N+ K+W +D A  ++    E  +    +D V  V W+  + +   + + +  + + IW    +NP       V +  +L      VW++ W +SG  LA +  D  V LW+ NL G W
Sbjct:   63 YGNILASSGYDGKVFIWRE-----QGGAWQKIFDFALHKASVNIVSWSPHESGCLLACASSDGHVSVLEFKDNSFDHQTFLAHGQGVNSVSWAPSTAPGSIISTNATPAAQR------RFVTG-GSD----NTLKIWSWDAASAQYR-CEEGGVLSGHTDWVLDVDWSPTVLQKSYIASASQDRTVRIWTSDSSNP------GVWQSRVLKEFDTTVWRVSWSLSGNVLAVSSGDNKVTLWKENLKGEW 288          
The following BLAST results are available for this feature:
BLAST of CK934406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
SEC13_PICGU6.558e-1327.49Protein transport protein SEC13 OS=Pichia guillier... [more]
SEH1_SCHPO1.908e-1223.86Nucleoporin seh1 OS=Schizosaccharomyces pombe GN=s... [more]
SEC13_PICST3.255e-1227.24Protein transport protein SEC13 OS=Pichia stipitis... [more]
SEC13_COCIM3.255e-1227.27Protein transport protein SEC13 OS=Coccidioides im... [more]
SEC13_LODEL4.251e-1230.16Protein transport protein SEC13 OS=Lodderomyces el... [more]
SC131_CANGA7.250e-1227.63Protein transport protein SEC13-1 OS=Candida glabr... [more]
SEC13_MAGGR1.237e-1125.30Protein transport protein SEC13 OS=Magnaporthe gri... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_D10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934406 ID=CK934406; Name=CK934406; organism=Citrus sinensis; type=EST; length=798bp
GGGGTTCGGTGACGCGGTTGCCTGTATTTGCTCGGATGGAAGTTTGTTGT
TGTGGGAAGAGATTGTTGAAGATGCACAGCCTCTGCAGTGGAAGCTCTGT
AAGAGCTTTGAAAGCACTTCGACTCAAGTGTTAGATGTTCAATTTGGAGT
CTCTTCCACAAGTTTGAAATTGGTTGCTGCATACTCAGATGGCCATGTTA
AAGTTTATGAGCTCCTAGATCCCTTGATACTGAAAAATTGGCAACTTCAT
GCTGAATTTCAGAATGCTATTGATTCTGTGACTATGTTTAGGAAGGCTTC
ATGCATATCGGCATCCATTTCTTGGAATCCACAGAAGGGTGAAAACCAGG
GATCTAGTTTTGTTCTCGGGTTCAATTCAGACACACCACAACTCAATTCC
TCCAAGGTATGGGAGTTTGATGAGGCTCATAATAGATGGCTACCAGTGGC
AGAGTTGGCTTTGCCTGAGGACAGGAGTGATGAGGTTTATGCTGTAGCAT
GGACACTAAACATCGGCCGGCCATATGAGGTGATAGCTGTTGCAACTCAG
AAGGGCATTGCCATTTGGCATGTTGGAGCAAACCCCGAGTTGGATGGAAG
GCTCTCAGTAGAGAAGGTTGCATTGCTCTCTGGCCATGGAGGCGAGGTGT
GGCAGATGGAATGGGACATGAGTGGGACGACCTTGGCAACAACAGGAAGT
GATGGGATGGTAAGGTTATGGCAATCTAACTTGAATGGCGTTTGGGATGA
ACAGGCTGCATTTCAACCCACTGCTTAGTGCCAACCAGCATCATTTCC
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