CK934899

Overview
NameCK934899
Unique NameCK934899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS23_CAEEL (40S ribosomal protein S23 OS=Caenorhabditis elegans GN=rps-23 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 6.319e-60
Identity = 108/143 (75.52%), Postives = 123/143 (86.01%), Query Frame = 2 
Query:   92 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 517
            MGK +G+   RKLKTHR+ QRW DK YKK+H+G  WK  PF G+SHAKGIVLEKIG+EA QPNSAIRKC  VQLIKNGKKI AFVPNDGCLN++EENDEVL++GFGR GHAVGDIPGVRFK+VKV+  SL+ALFK KKE+PRS
Sbjct:    1 MGKPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143
[Close]
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS23_RAT (40S ribosomal protein S23 OS=Rattus norvegicus GN=Rps23 PE=2 SV=3)

HSP 1 Score: 230.335 bits (586), Expect = 8.253e-60
Identity = 111/143 (77.62%), Postives = 124/143 (86.71%), Query Frame = 2 
Query:   92 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 517
            MGK RG+   RKL++HRR Q+W DK YKK+HLG   K  PF G+SHAKGIVLEK+G+EA QPNSAIRKC  VQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:    1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS23_MOUSE (40S ribosomal protein S23 OS=Mus musculus GN=Rps23 PE=2 SV=3)

HSP 1 Score: 230.335 bits (586), Expect = 8.253e-60
Identity = 111/143 (77.62%), Postives = 124/143 (86.71%), Query Frame = 2 
Query:   92 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 517
            MGK RG+   RKL++HRR Q+W DK YKK+HLG   K  PF G+SHAKGIVLEK+G+EA QPNSAIRKC  VQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:    1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS23_HUMAN (40S ribosomal protein S23 OS=Homo sapiens GN=RPS23 PE=1 SV=3)

HSP 1 Score: 230.335 bits (586), Expect = 8.253e-60
Identity = 111/143 (77.62%), Postives = 124/143 (86.71%), Query Frame = 2 
Query:   92 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 517
            MGK RG+   RKL++HRR Q+W DK YKK+HLG   K  PF G+SHAKGIVLEK+G+EA QPNSAIRKC  VQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:    1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS23_CHILA (40S ribosomal protein S23 OS=Chinchilla lanigera GN=RPS23 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 8.253e-60
Identity = 111/143 (77.62%), Postives = 124/143 (86.71%), Query Frame = 2 
Query:   92 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 517
            MGK RG+   RKL++HRR Q+W DK YKK+HLG   K  PF G+SHAKGIVLEK+G+EA QPNSAIRKC  VQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:    1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS23_BOVIN (40S ribosomal protein S23 OS=Bos taurus GN=RPS23 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 8.253e-60
Identity = 111/143 (77.62%), Postives = 124/143 (86.71%), Query Frame = 2 
Query:   92 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 517
            MGK RG+   RKL++HRR Q+W DK YKK+HLG   K  PF G+SHAKGIVLEK+G+EA QPNSAIRKC  VQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:    1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS23_ICTPU (40S ribosomal protein S23 OS=Ictalurus punctatus GN=rps23 PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.408e-59
Identity = 111/143 (77.62%), Postives = 123/143 (86.01%), Query Frame = 2 
Query:   92 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 517
            MGK RG+   RKL+ HRR Q+W DK YKK+HLG   K  PF G+SHAKGIVLEK+G+EA QPNSAIRKC  VQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:    1 MGKCRGLRTARKLRDHRREQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS23_PIG (40S ribosomal protein S23 OS=Sus scrofa GN=RPS23 PE=2 SV=3)

HSP 1 Score: 228.409 bits (581), Expect = 3.136e-59
Identity = 110/143 (76.92%), Postives = 123/143 (86.01%), Query Frame = 2 
Query:   92 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 517
            MGK RG+   RKL++HRR  +W DK YKK+HLG   K  PF G+SHAKGIVLEK+G+EA QPNSAIRKC  VQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:    1 MGKCRGLRTARKLRSHRRDHKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS23_ASPFU (40S ribosomal protein S23 OS=Aspergillus fumigatus GN=rps23 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.009e-57
Identity = 110/142 (77.46%), Postives = 120/142 (84.51%), Query Frame = 2 
Query:   95 GKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 517
            GK RG+ A RKL  HRR QRWAD  YKK  LG  +K  PF G+SHAKGIVLEK+G+EA QPNSAIRKC  VQLIKNGKK+ AFVPNDGCLN+I+ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGV LLAL+KEKKEKPRS
Sbjct:    4 GKPRGLNAARKLSNHRREQRWADLHYKKRLLGTAFKSSPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVKVQLIKNGKKVTAFVPNDGCLNFIDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVGLLALWKEKKEKPRS 145
[Close]
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS23_YEAST (40S ribosomal protein S23 OS=Saccharomyces cerevisiae GN=RPS23A PE=1 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.721e-57
Identity = 108/142 (76.06%), Postives = 122/142 (85.92%), Query Frame = 2 
Query:   95 GKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 517
            GK RG+ + RKL+ HRR  RWA+ +YKK  LG  +K  PF GSSHAKGIVLEK+GIE+ QPNSAIRKC  VQLIKNGKK+ AFVPNDGCLN+++ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGVSLLAL+KEKKEKPRS
Sbjct:    4 GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145
The following BLAST results are available for this feature:
BLAST of CK934899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS23_CAEEL6.319e-6075.5240S ribosomal protein S23 OS=Caenorhabditis elegan... [more]
RS23_RAT8.253e-6077.6240S ribosomal protein S23 OS=Rattus norvegicus GN=... [more]
RS23_MOUSE8.253e-6077.6240S ribosomal protein S23 OS=Mus musculus GN=Rps23... [more]
RS23_HUMAN8.253e-6077.6240S ribosomal protein S23 OS=Homo sapiens GN=RPS23... [more]
RS23_CHILA8.253e-6077.6240S ribosomal protein S23 OS=Chinchilla lanigera G... [more]
RS23_BOVIN8.253e-6077.6240S ribosomal protein S23 OS=Bos taurus GN=RPS23 P... [more]
RS23_ICTPU1.408e-5977.6240S ribosomal protein S23 OS=Ictalurus punctatus G... [more]
RS23_PIG3.136e-5976.9240S ribosomal protein S23 OS=Sus scrofa GN=RPS23 P... [more]
RS23_ASPFU1.009e-5777.4640S ribosomal protein S23 OS=Aspergillus fumigatus... [more]
RS23_YEAST1.721e-5776.0640S ribosomal protein S23 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004225_E04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IVF_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934899 ID=CK934899; Name=CK934899; organism=Citrus sinensis; type=EST; length=740bp
GGGGAGGGTTTTACTAAGCGGCTGGTGTTTCTTCTCTTCGCCTTAACTTC
TACACAGCCTCGTAGCAGTCGAGTAACTACAATCAGGAATCATGGGGAAG
ACACGTGGTATGGGAGCTGGTCGCAAGCTGAAGACTCACCGTAGGACTCA
AAGGTGGGCTGATAAGTCATACAAAAAGTCTCACCTCGGCAATGAGTGGA
AGAAGCCATTTGCTGGTTCTTCCCATGCTAAAGGAATTGTTCTTGAGAAG
ATAGGTATTGAAGCTAACCAGCCTAACTCTGCTATTCGTAAGTGTGCTAC
AGTTCAACTTATCAAAAACGGAAAGAAGATTGCCGCTTTTGTTCCAAATG
ATGGTTGCTTGAACTATATTGAAGAAAATGATGAGGTGTTGATTGCTGGA
TTTGGACGTAAGGGACATGCGGTCGGTGATATTCCCGGTGTCAGGTTCAA
GGTTGTGAAGGTCTCTGGTGTCTCTCTCTTGGCTCTCTTCAAAGAAAAGA
AAGAGAAGCCCAGGTCTTAAGATAAGAGACCTGTCTTAACCTGCAAACTC
TTTGATAGTTCTTTTAAAGAATTCGGATTGTCACTTTTTGTTATCGAGTG
GATTTATGAACAATTTTTTATCAATTGTCTAGTCAATGTATTGCTGTGGT
ACAATTTTGACTCTAGAATTGATATTTGGTCAATCAGTTCAAATGGCTGT
CATTCTTCTCTTAAATGAATTATAATTGCTCACTATTCTC
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