CK934899

Overview
NameCK934899
Unique NameCK934899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS23_EUPES (40S ribosomal protein S23 OS=Euphorbia esula GN=RPS23 PE=2 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.549e-74
Identity = 137/142 (96.48%), Postives = 138/142 (97.18%), Query Frame = 2
Query:   92 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 517
            MGKT GMGA RKLK+HRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEA QPNSAIRKCA VQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:    1 MGKTHGMGAARKLKSHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142          
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS23_FRAAN (40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 2.642e-74
Identity = 137/142 (96.48%), Postives = 137/142 (96.48%), Query Frame = 2
Query:   92 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 517
            MGKTRGMGA RKLK HRR QRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEA QPNSAIRKCA VQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:    1 MGKTRGMGAARKLKNHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142          
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS232_ARATH (40S ribosomal protein S23-2 OS=Arabidopsis thaliana GN=RPS23B PE=2 SV=2)

HSP 1 Score: 271.937 bits (694), Expect = 2.473e-72
Identity = 135/142 (95.07%), Postives = 135/142 (95.07%), Query Frame = 2
Query:   92 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 517
            MGKTRGMGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEA QPNSAIRKCA VQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:    1 MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142          
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS231_ARATH (40S ribosomal protein S23-1 OS=Arabidopsis thaliana GN=RPS23A PE=2 SV=2)

HSP 1 Score: 265.003 bits (676), Expect = 3.023e-70
Identity = 133/142 (93.66%), Postives = 134/142 (94.37%), Query Frame = 2
Query:   92 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 517
            MGKTRGMGAGRKLK  R TQRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEA QPNSAIRKCA VQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:    1 MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142          
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS23_LUMRU (40S ribosomal protein S23 OS=Lumbricus rubellus GN=RPS23 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.958e-62
Identity = 114/143 (79.72%), Postives = 124/143 (86.71%), Query Frame = 2
Query:   92 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 517
            MGK RG+   RKLK HRR QRW DK YKKSHLG  WK  PF G+SHAKGIVLEK+G+EA QPNSAIRKC  VQLIKNGKKI AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K+KKE+PRS
Sbjct:    1 MGKPRGLRTARKLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVASVSLLALYKQKKERPRS 143          
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS23_DERVA (40S ribosomal protein S23 OS=Dermacentor variabilis GN=RpS23 PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.504e-61
Identity = 113/143 (79.02%), Postives = 124/143 (86.71%), Query Frame = 2
Query:   92 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 517
            MGK RG+   RK ++HRR QRW DK YKK+HLG  WK  PF G+SHAKGIVLEK+G+EA QPNSAIRKC  VQLIKNGKKI AFVP DGCLNYIEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct:    1 MGKPRGLRTARKHRSHRRDQRWHDKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143          
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS23_BRUMA (40S ribosomal protein S23 OS=Brugia malayi GN=rps-23 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 7.464e-61
Identity = 111/143 (77.62%), Postives = 124/143 (86.71%), Query Frame = 2
Query:   92 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 517
            MGK +G+ A RKLKTHR+ QRW DK YKK+HLG  WK  PF  +SHAKGIVLEK+G+EA QPNSAIRKC  VQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFK+VKV+  SL+ALFK KKE+PRS
Sbjct:    1 MGKPKGIRAARKLKTHRQAQRWNDKGYKKAHLGTRWKANPFGTASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143          
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS23_SPOFR (40S ribosomal protein S23 OS=Spodoptera frugiperda GN=RpS23 PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.273e-60
Identity = 111/143 (77.62%), Postives = 123/143 (86.01%), Query Frame = 2
Query:   92 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 517
            MGK RG+   RK   HRR QRWADK YKK+H+G  WK  PF G+SHAKGIVLEK+G+EA QPNSAIRKC  VQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct:    1 MGKPRGIRTARKHVNHRREQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143          
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS23_PAPDA (40S ribosomal protein S23 OS=Papilio dardanus GN=RpS23 PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.273e-60
Identity = 111/143 (77.62%), Postives = 123/143 (86.01%), Query Frame = 2
Query:   92 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 517
            MGK RG+   RK   HRR QRWADK YKK+H+G  WK  PF G+SHAKGIVLEK+G+EA QPNSAIRKC  VQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct:    1 MGKPRGIRTARKHVNHRREQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143          
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS23_DROME (40S ribosomal protein S23 OS=Drosophila melanogaster GN=RpS23 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.663e-60
Identity = 113/143 (79.02%), Postives = 122/143 (85.31%), Query Frame = 2
Query:   92 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 517
            MGK RG+   RK   HRR QRWADK YKK+HLG  WK  PF G+SHAKGIVLEK+G+EA QPNSAIRKC  VQLIKNGKKI AFVP DG LNYIEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct:    1 MGKPRGLRTARKHVNHRRDQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGSLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143          
The following BLAST results are available for this feature:
BLAST of CK934899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS23_EUPES1.549e-7496.4840S ribosomal protein S23 OS=Euphorbia esula GN=RP... [more]
RS23_FRAAN2.642e-7496.4840S ribosomal protein S23 OS=Fragaria ananassa GN=... [more]
RS232_ARATH2.473e-7295.0740S ribosomal protein S23-2 OS=Arabidopsis thalian... [more]
RS231_ARATH3.023e-7093.6640S ribosomal protein S23-1 OS=Arabidopsis thalian... [more]
RS23_LUMRU3.958e-6279.7240S ribosomal protein S23 OS=Lumbricus rubellus GN... [more]
RS23_DERVA1.504e-6179.0240S ribosomal protein S23 OS=Dermacentor variabili... [more]
RS23_BRUMA7.464e-6177.6240S ribosomal protein S23 OS=Brugia malayi GN=rps-... [more]
RS23_SPOFR1.273e-6077.6240S ribosomal protein S23 OS=Spodoptera frugiperda... [more]
RS23_PAPDA1.273e-6077.6240S ribosomal protein S23 OS=Papilio dardanus GN=R... [more]
RS23_DROME1.663e-6079.0240S ribosomal protein S23 OS=Drosophila melanogast... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004225_E04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IVF_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934899 ID=CK934899; Name=CK934899; organism=Citrus sinensis; type=EST; length=740bp
GGGGAGGGTTTTACTAAGCGGCTGGTGTTTCTTCTCTTCGCCTTAACTTC
TACACAGCCTCGTAGCAGTCGAGTAACTACAATCAGGAATCATGGGGAAG
ACACGTGGTATGGGAGCTGGTCGCAAGCTGAAGACTCACCGTAGGACTCA
AAGGTGGGCTGATAAGTCATACAAAAAGTCTCACCTCGGCAATGAGTGGA
AGAAGCCATTTGCTGGTTCTTCCCATGCTAAAGGAATTGTTCTTGAGAAG
ATAGGTATTGAAGCTAACCAGCCTAACTCTGCTATTCGTAAGTGTGCTAC
AGTTCAACTTATCAAAAACGGAAAGAAGATTGCCGCTTTTGTTCCAAATG
ATGGTTGCTTGAACTATATTGAAGAAAATGATGAGGTGTTGATTGCTGGA
TTTGGACGTAAGGGACATGCGGTCGGTGATATTCCCGGTGTCAGGTTCAA
GGTTGTGAAGGTCTCTGGTGTCTCTCTCTTGGCTCTCTTCAAAGAAAAGA
AAGAGAAGCCCAGGTCTTAAGATAAGAGACCTGTCTTAACCTGCAAACTC
TTTGATAGTTCTTTTAAAGAATTCGGATTGTCACTTTTTGTTATCGAGTG
GATTTATGAACAATTTTTTATCAATTGTCTAGTCAATGTATTGCTGTGGT
ACAATTTTGACTCTAGAATTGATATTTGGTCAATCAGTTCAAATGGCTGT
CATTCTTCTCTTAAATGAATTATAATTGCTCACTATTCTC
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