CK934899

Overview
NameCK934899
Unique NameCK934899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS23_SACCA (40S ribosomal protein S23 OS=Saccharomyces castellii GN=RPS23A PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.721e-57
Identity = 108/142 (76.06%), Postives = 122/142 (85.92%), Query Frame = 2
Query:   95 GKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 517
            GK RG+ + RKL+ HRR  RWA+ +YKK  LG  +K  PF GSSHAKGIVLEK+GIE+ QPNSAIRKC  VQLIKNGKK+ AFVPNDGCLN+++ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGVSLLAL+KEKKEKPRS
Sbjct:    4 GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145          
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS23_SACBA (40S ribosomal protein S23 OS=Saccharomyces bayanus GN=RPS23A PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.721e-57
Identity = 108/142 (76.06%), Postives = 122/142 (85.92%), Query Frame = 2
Query:   95 GKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 517
            GK RG+ + RKL+ HRR  RWA+ +YKK  LG  +K  PF GSSHAKGIVLEK+GIE+ QPNSAIRKC  VQLIKNGKK+ AFVPNDGCLN+++ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGVSLLAL+KEKKEKPRS
Sbjct:    4 GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145          
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS23_CANGA (40S ribosomal protein S23 OS=Candida glabrata GN=RPS23 PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.721e-57
Identity = 108/142 (76.06%), Postives = 122/142 (85.92%), Query Frame = 2
Query:   95 GKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 517
            GK RG+ + RKL+ HRR  RWA+ +YKK  LG  +K  PF GSSHAKGIVLEK+GIE+ QPNSAIRKC  VQLIKNGKK+ AFVPNDGCLN+++ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGVSLLAL+KEKKEKPRS
Sbjct:    4 GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145          
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS23_NEUCR (40S ribosomal protein S23 OS=Neurospora crassa GN=rps-23 PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.833e-57
Identity = 108/142 (76.06%), Postives = 121/142 (85.21%), Query Frame = 2
Query:   95 GKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 517
            GK RG+ A RKL+ +RR QRW+D  YKK  LG  +K  PF GSSHAKGIVLEK+G+EA QPNSAIRKC  VQLIKNGKK+ AFVPNDGCLN+++ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGV LLAL+KEKKEKPRS
Sbjct:    4 GKPRGLNAARKLRNNRREQRWSDLHYKKRALGTAFKSSPFGGSSHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVGLLALWKEKKEKPRS 145          
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS23_CIOIN (40S ribosomal protein S23 OS=Ciona intestinalis GN=RPS23 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.536e-56
Identity = 108/143 (75.52%), Postives = 116/143 (81.12%), Query Frame = 2
Query:   92 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 517
            MGK  G+   RKL   RR Q+W D  YKKSHLG   K  PF G+SHAKGIVLEKIG+EA QPNSAIRKC  VQLIKNGKKI AFVPNDGCLNYIEENDEVL+AGFGR GHAVGDIPGVRFK+VKV+ VSL ALF  KKE+PRS
Sbjct:    1 MGKPSGLRCARKLXNRRRDQKWHDXXYKKSHLGTALKANPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLVAGFGRSGHAVGDIPGVRFKIVKVANVSLHALFTGKKERPRS 143          
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS23_GILMI (40S ribosomal protein S23 OS=Gillichthys mirabilis GN=rps23 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 9.442e-56
Identity = 104/143 (72.73%), Postives = 119/143 (83.22%), Query Frame = 2
Query:   92 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 517
            MGK RG+   RKL+ HRR Q+W DK YKK+HLG   K  PF  +SHAKGIVLEK+G+EA QPNSAIRKC  VQLIKNGKKI AFVPNDGCLN+ EENDEVL+AGFGRK HAVGDIPGVRFKVV+++ VSLLAL+K  KE+P+S
Sbjct:    1 MGKCRGLRTARKLRNHRREQKWHDKQYKKAHLGTALKANPFGSASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFXEENDEVLVAGFGRKXHAVGDIPGVRFKVVEMANVSLLALYKGXKERPKS 143          
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS23_SCHPO (40S ribosomal protein S23 OS=Schizosaccharomyces pombe GN=rps23a PE=2 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 2.747e-55
Identity = 104/143 (72.73%), Postives = 119/143 (83.22%), Query Frame = 2
Query:   92 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 517
            MGK  G+ A RKL+ HRR +RWAD  YKK  LG  +K  PF GSSHAKGIV+EKIG+EA QPNSAIRKC  VQLIKNGKK+ AFVP+DGCLN+++ENDEVL++GFGRKG A GDIPGVRFKVVKV+GV L ALF EKKEKPR+
Sbjct:    1 MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143          
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_TETTH (40S ribosomal protein S12 OS=Tetrahymena thermophila PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.667e-52
Identity = 98/139 (70.50%), Postives = 113/139 (81.29%), Query Frame = 2
Query:   92 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 508
            +GK RG+ AGRKL  HR+ QRWAD  + K  LG+ W+ PF G+SHAKG+V EKIGIE+ QPNSA+RKC  V L KN KKIAAFVP DGCLN++ ENDEVL+AG GR+GHAVGDIPGVRFKVV V G+SLLALFK KKEK
Sbjct:    3 VGKPRGIRAGRKLARHRKDQRWADNDFNKRLLGSRWRNPFMGASHAKGLVTEKIGIESKQPNSAVRKCVRVLLRKNSKKIAAFVPMDGCLNFLAENDEVLVAGLGRQGHAVGDIPGVRFKVVCVKGISLLALFKGKKEK 141          
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS23_DICDI (40S ribosomal protein S23 OS=Dictyostelium discoideum GN=rps23 PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 8.272e-52
Identity = 97/141 (68.79%), Postives = 113/141 (80.14%), Query Frame = 2
Query:   92 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 511
            MGK  G+   RKL+ HRR QRW DK YKK+H G   K  PF G+SHA GIV+ ++GIEA QPNSAIRKC  VQL KNGKKI AFVPNDGCLNYI+END+VL+AG GR GH+VGDIPGVRFKVVKVS VSL+A+++  K+KP
Sbjct:    1 MGKPNGLKTARKLRNHRRVQRWNDKLYKKAHFGTALKANPFGGASHASGIVVSRLGIEAKQPNSAIRKCVRVQLKKNGKKITAFVPNDGCLNYIQENDKVLVAGLGRSGHSVGDIPGVRFKVVKVSSVSLIAIYRGIKDKP 141          
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_PICTO (30S ribosomal protein S12P OS=Picrophilus torridus GN=rps12p PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.205e-38
Identity = 76/136 (55.88%), Postives = 102/136 (75.00%), Query Frame = 2
Query:  107 GMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 508
            G+ AG+KL   R+T RW+D+ YK+  L  + K  P  G+  AKGIV+EK+GIEA QPNS IRKC  +QLIKNG++++AF P DG +NYI+E+DEV++ G  GR G + GDIPGVR+KV+KV+G+SL  L K +KEK
Sbjct:    4 GLNAGKKLMKSRKTYRWSDRDYKRRVLNLKKKSDPLEGAPQAKGIVIEKVGIEAKQPNSGIRKCVKIQLIKNGRQLSAFAPGDGAINYIDEHDEVVVEGIGGRMGRSKGDIPGVRYKVIKVNGISLHELVKGRKEK 139          
The following BLAST results are available for this feature:
BLAST of CK934899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS23_SACCA1.721e-5776.0640S ribosomal protein S23 OS=Saccharomyces castell... [more]
RS23_SACBA1.721e-5776.0640S ribosomal protein S23 OS=Saccharomyces bayanus... [more]
RS23_CANGA1.721e-5776.0640S ribosomal protein S23 OS=Candida glabrata GN=R... [more]
RS23_NEUCR3.833e-5776.0640S ribosomal protein S23 OS=Neurospora crassa GN=... [more]
RS23_CIOIN5.536e-5675.5240S ribosomal protein S23 OS=Ciona intestinalis GN... [more]
RS23_GILMI9.442e-5672.7340S ribosomal protein S23 OS=Gillichthys mirabilis... [more]
RS23_SCHPO2.747e-5572.7340S ribosomal protein S23 OS=Schizosaccharomyces p... [more]
RS12_TETTH1.667e-5270.5040S ribosomal protein S12 OS=Tetrahymena thermophi... [more]
RS23_DICDI8.272e-5268.7940S ribosomal protein S23 OS=Dictyostelium discoid... [more]
RS12_PICTO5.205e-3855.8830S ribosomal protein S12P OS=Picrophilus torridus... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004225_E04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IVF_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934899 ID=CK934899; Name=CK934899; organism=Citrus sinensis; type=EST; length=740bp
GGGGAGGGTTTTACTAAGCGGCTGGTGTTTCTTCTCTTCGCCTTAACTTC
TACACAGCCTCGTAGCAGTCGAGTAACTACAATCAGGAATCATGGGGAAG
ACACGTGGTATGGGAGCTGGTCGCAAGCTGAAGACTCACCGTAGGACTCA
AAGGTGGGCTGATAAGTCATACAAAAAGTCTCACCTCGGCAATGAGTGGA
AGAAGCCATTTGCTGGTTCTTCCCATGCTAAAGGAATTGTTCTTGAGAAG
ATAGGTATTGAAGCTAACCAGCCTAACTCTGCTATTCGTAAGTGTGCTAC
AGTTCAACTTATCAAAAACGGAAAGAAGATTGCCGCTTTTGTTCCAAATG
ATGGTTGCTTGAACTATATTGAAGAAAATGATGAGGTGTTGATTGCTGGA
TTTGGACGTAAGGGACATGCGGTCGGTGATATTCCCGGTGTCAGGTTCAA
GGTTGTGAAGGTCTCTGGTGTCTCTCTCTTGGCTCTCTTCAAAGAAAAGA
AAGAGAAGCCCAGGTCTTAAGATAAGAGACCTGTCTTAACCTGCAAACTC
TTTGATAGTTCTTTTAAAGAATTCGGATTGTCACTTTTTGTTATCGAGTG
GATTTATGAACAATTTTTTATCAATTGTCTAGTCAATGTATTGCTGTGGT
ACAATTTTGACTCTAGAATTGATATTTGGTCAATCAGTTCAAATGGCTGT
CATTCTTCTCTTAAATGAATTATAATTGCTCACTATTCTC
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