CK934899

Overview
NameCK934899
Unique NameCK934899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_STAMF (30S ribosomal protein S12P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps12p PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.158e-35
Identity = 76/137 (55.47%), Postives = 100/137 (72.99%), Query Frame = 2
Query:  107 GMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 511
            G+ A RKL+  R   RW+ + +K   LG + K  P  G+  A+GIVLEK+G+EA QPNSA+RKC  VQL KNGK + AFVP DG +NYI+E+DEV+I G  G +G ++GDIPGVR+KV+ V+GVSL AL+  KK+KP
Sbjct:    9 GLFAARKLRRKRLKFRWSQREFKIKMLGLKKKHDPLEGAPMARGIVLEKVGVEARQPNSAVRKCVRVQLAKNGKVVTAFVPFDGGINYIDEHDEVIIEGIGGPRGRSMGDIPGVRYKVIMVNGVSLKALYLGKKQKP 145          
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_PYRKO (30S ribosomal protein S12P OS=Pyrococcus kodakaraensis GN=rps12p PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.158e-35
Identity = 79/138 (57.25%), Postives = 98/138 (71.01%), Query Frame = 2
Query:  107 GMGAGRKLKTHRRTQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 514
            G  AGRKLK  R+  RW+D  YK+  L   E   P  G+  A+GIVLEKI +EA QPNSA+RK   VQLIKNGK + AF P DG +N+I+E+DEV+I G  G KG ++GDIPG+R+KVVKV+ VSL  L K +KEKPR
Sbjct:    9 GEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSAMRKAVRVQLIKNGKVVTAFTPGDGAINHIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146          
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_HALSA (30S ribosomal protein S12P OS=Halobacterium salinarium GN=rps12p PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.387e-35
Identity = 76/139 (54.68%), Postives = 96/139 (69.06%), Query Frame = 2
Query:  101 TRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 511
            T G  A RKLK  R+ +RW+D  Y +   G   K  P  G+   +GIVLEK+GIEA QPNSAIRKC  VQLIKNGK++ AF P DG +++I+E+DEV IAG  G KG A+GD+ GV +KV KV+GVSL+ L +   EKP
Sbjct:    2 TNGKYAARKLKKDRQQRRWSDSEYARRERGLGKKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIELVRGNAEKP 140          
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_METST (30S ribosomal protein S12P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps12p PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.035e-35
Identity = 76/137 (55.47%), Postives = 96/137 (70.07%), Query Frame = 2
Query:  107 GMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 511
            G+ A +KLK +R+  RW D  YK+  LG   K  P  GS  A+GIV+EK+GIEA QPNSAIRKC  VQLIKNGK+I AF P DG + +I+E+DEV+I G  G  G ++GDIPGVR+KV KV+ V+L  +   K EKP
Sbjct:    3 GLFAAKKLKDNRQNFRWKDTQYKRKTLGLNIKADPLEGSPQARGIVIEKVGIEAKQPNSAIRKCVRVQLIKNGKQITAFAPGDGAIGFIDEHDEVMIEGIGGPSGRSMGDIPGVRWKVTKVNNVALSEMVSGKIEKP 139          
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_PYRHO (30S ribosomal protein S12P OS=Pyrococcus horikoshii GN=rps12p PE=3 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 9.188e-35
Identity = 78/138 (56.52%), Postives = 97/138 (70.29%), Query Frame = 2
Query:  107 GMGAGRKLKTHRRTQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 514
            G  AGRKLK  R+  RW+D  YK+  L   E   P  G+  A+GIVLEKI +EA QPNS +RK   VQLIKNGK + AF P DG +N+I+E+DEV+I G  G KG ++GDIPG+R+KVVKV+ VSL  L K +KEKPR
Sbjct:    9 GEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAINFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146          
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_THEPD (30S ribosomal protein S12P OS=Thermofilum pendens (strain Hrk 5) GN=rps12p PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.047e-34
Identity = 73/138 (52.90%), Postives = 100/138 (72.46%), Query Frame = 2
Query:  104 RGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 511
            RGM A RKL+  R+  RW+D  YK+  L  + K  P  G+  A+GIV+EK+GIE+ QPNSA+RKC  VQL+KNGK + AF+P DG L ++ E+DEV+I G  G +G A GD+PGVR+KV+KV+GVSL  + + +K+KP
Sbjct:    8 RGMFAARKLELKRKKFRWSDLEYKRRILQLKKKVDPLEGAPQARGIVVEKVGIESRQPNSAVRKCVRVQLLKNGKVVTAFLPGDGALLFVNEHDEVVIEGIGGPEGRAYGDLPGVRWKVIKVNGVSLKEILRGRKQKP 145          
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_HALWD (30S ribosomal protein S12P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps12p PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.047e-34
Identity = 75/137 (54.74%), Postives = 95/137 (69.34%), Query Frame = 2
Query:  107 GMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 511
            G  A RKLK  R+ +RW+D  Y +   G   K  P  G+   +GIVLEK+GIEA QPNSAIRKC  VQLIKNGK++ AF P DG +++I+E+DEV IAG  G KG A+GD+ GV +KV KV+GVSL+ L +   EKP
Sbjct:    4 GKYAARKLKQDRQQRRWSDSEYARRERGLGAKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIELVRGNAEKP 140          
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_HALMA (30S ribosomal protein S12P OS=Haloarcula marismortui GN=rps12p PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.491e-34
Identity = 75/137 (54.74%), Postives = 94/137 (68.61%), Query Frame = 2
Query:  107 GMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 511
            G  A RKLK  R+  RW+D  Y +   G   K  P  G+   +GIVLEK+GIEA QPNSAIRKC  VQLIKNGK++ AF P DG +++I+E+DEV IAG  G KG A+GD+ GV +KV KV+GVSL+ L +   EKP
Sbjct:    4 GKYAARKLKKDRQKHRWSDTDYARRERGLGKKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIELVRGNAEKP 140          
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_SULAC (30S ribosomal protein S12P OS=Sulfolobus acidocaldarius GN=rps12p PE=3 SV=3)

HSP 1 Score: 144.821 bits (364), Expect = 4.560e-34
Identity = 74/138 (53.62%), Postives = 102/138 (73.91%), Query Frame = 2
Query:  104 RGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 511
            +G+ A RKL+  R    W+ +S+K+  L  + K  P  G+  A+GIVLEK+GIE+ QPNSA+RK   VQL+KNG+ + AFVP DG +N+I+E+DEV+IAG  G  G ++GD+PGVR+KVV V+GVSL AL+K KK+KP
Sbjct:    8 KGLFAARKLRLKRLKFSWSQRSFKRRMLALKEKFDPLEGAPMARGIVLEKVGIESRQPNSAVRKAVRVQLVKNGRIVTAFVPGDGGVNFIDEHDEVVIAGIGGTLGRSMGDLPGVRYKVVMVNGVSLDALYKGKKQKP 145          
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_PYRFU (30S ribosomal protein S12P OS=Pyrococcus furiosus GN=rps12p PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.560e-34
Identity = 77/138 (55.80%), Postives = 96/138 (69.57%), Query Frame = 2
Query:  107 GMGAGRKLKTHRRTQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 514
            G  AGRKLK  R+  RW+D  YK+  L   E   P  G+  A+GIVLEKI +EA QPNS +RK   VQLIKNGK + AF P DG + +I+E+DEV+I G  G KG ++GDIPG+R+KVVKV+ VSL  L K +KEKPR
Sbjct:    9 GEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146          
The following BLAST results are available for this feature:
BLAST of CK934899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS12_STAMF3.158e-3555.4730S ribosomal protein S12P OS=Staphylothermus mari... [more]
RS12_PYRKO3.158e-3557.2530S ribosomal protein S12P OS=Pyrococcus kodakarae... [more]
RS12_HALSA5.387e-3554.6830S ribosomal protein S12P OS=Halobacterium salina... [more]
RS12_METST7.035e-3555.4730S ribosomal protein S12P OS=Methanosphaera stadt... [more]
RS12_PYRHO9.188e-3556.5230S ribosomal protein S12P OS=Pyrococcus horikoshi... [more]
RS12_THEPD2.047e-3452.9030S ribosomal protein S12P OS=Thermofilum pendens ... [more]
RS12_HALWD2.047e-3454.7430S ribosomal protein S12P OS=Haloquadratum walsby... [more]
RS12_HALMA3.491e-3454.7430S ribosomal protein S12P OS=Haloarcula marismort... [more]
RS12_SULAC4.560e-3453.6230S ribosomal protein S12P OS=Sulfolobus acidocald... [more]
RS12_PYRFU4.560e-3455.8030S ribosomal protein S12P OS=Pyrococcus furiosus ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004225_E04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IVF_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934899 ID=CK934899; Name=CK934899; organism=Citrus sinensis; type=EST; length=740bp
GGGGAGGGTTTTACTAAGCGGCTGGTGTTTCTTCTCTTCGCCTTAACTTC
TACACAGCCTCGTAGCAGTCGAGTAACTACAATCAGGAATCATGGGGAAG
ACACGTGGTATGGGAGCTGGTCGCAAGCTGAAGACTCACCGTAGGACTCA
AAGGTGGGCTGATAAGTCATACAAAAAGTCTCACCTCGGCAATGAGTGGA
AGAAGCCATTTGCTGGTTCTTCCCATGCTAAAGGAATTGTTCTTGAGAAG
ATAGGTATTGAAGCTAACCAGCCTAACTCTGCTATTCGTAAGTGTGCTAC
AGTTCAACTTATCAAAAACGGAAAGAAGATTGCCGCTTTTGTTCCAAATG
ATGGTTGCTTGAACTATATTGAAGAAAATGATGAGGTGTTGATTGCTGGA
TTTGGACGTAAGGGACATGCGGTCGGTGATATTCCCGGTGTCAGGTTCAA
GGTTGTGAAGGTCTCTGGTGTCTCTCTCTTGGCTCTCTTCAAAGAAAAGA
AAGAGAAGCCCAGGTCTTAAGATAAGAGACCTGTCTTAACCTGCAAACTC
TTTGATAGTTCTTTTAAAGAATTCGGATTGTCACTTTTTGTTATCGAGTG
GATTTATGAACAATTTTTTATCAATTGTCTAGTCAATGTATTGCTGTGGT
ACAATTTTGACTCTAGAATTGATATTTGGTCAATCAGTTCAAATGGCTGT
CATTCTTCTCTTAAATGAATTATAATTGCTCACTATTCTC
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