CK934899
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_STAMF (30S ribosomal protein S12P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps12p PE=3 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 3.158e-35 Identity = 76/137 (55.47%), Postives = 100/137 (72.99%), Query Frame = 2 Query: 107 GMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 511 G+ A RKL+ R RW+ + +K LG + K P G+ A+GIVLEK+G+EA QPNSA+RKC VQL KNGK + AFVP DG +NYI+E+DEV+I G G +G ++GDIPGVR+KV+ V+GVSL AL+ KK+KP Sbjct: 9 GLFAARKLRRKRLKFRWSQREFKIKMLGLKKKHDPLEGAPMARGIVLEKVGVEARQPNSAVRKCVRVQLAKNGKVVTAFVPFDGGINYIDEHDEVIIEGIGGPRGRSMGDIPGVRYKVIMVNGVSLKALYLGKKQKP 145
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_PYRKO (30S ribosomal protein S12P OS=Pyrococcus kodakaraensis GN=rps12p PE=3 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 3.158e-35 Identity = 79/138 (57.25%), Postives = 98/138 (71.01%), Query Frame = 2 Query: 107 GMGAGRKLKTHRRTQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 514 G AGRKLK R+ RW+D YK+ L E P G+ A+GIVLEKI +EA QPNSA+RK VQLIKNGK + AF P DG +N+I+E+DEV+I G G KG ++GDIPG+R+KVVKV+ VSL L K +KEKPR Sbjct: 9 GEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSAMRKAVRVQLIKNGKVVTAFTPGDGAINHIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_HALSA (30S ribosomal protein S12P OS=Halobacterium salinarium GN=rps12p PE=3 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 5.387e-35 Identity = 76/139 (54.68%), Postives = 96/139 (69.06%), Query Frame = 2 Query: 101 TRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 511 T G A RKLK R+ +RW+D Y + G K P G+ +GIVLEK+GIEA QPNSAIRKC VQLIKNGK++ AF P DG +++I+E+DEV IAG G KG A+GD+ GV +KV KV+GVSL+ L + EKP Sbjct: 2 TNGKYAARKLKKDRQQRRWSDSEYARRERGLGKKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIELVRGNAEKP 140
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_METST (30S ribosomal protein S12P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps12p PE=3 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 7.035e-35 Identity = 76/137 (55.47%), Postives = 96/137 (70.07%), Query Frame = 2 Query: 107 GMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 511 G+ A +KLK +R+ RW D YK+ LG K P GS A+GIV+EK+GIEA QPNSAIRKC VQLIKNGK+I AF P DG + +I+E+DEV+I G G G ++GDIPGVR+KV KV+ V+L + K EKP Sbjct: 3 GLFAAKKLKDNRQNFRWKDTQYKRKTLGLNIKADPLEGSPQARGIVIEKVGIEAKQPNSAIRKCVRVQLIKNGKQITAFAPGDGAIGFIDEHDEVMIEGIGGPSGRSMGDIPGVRWKVTKVNNVALSEMVSGKIEKP 139
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_PYRHO (30S ribosomal protein S12P OS=Pyrococcus horikoshii GN=rps12p PE=3 SV=2) HSP 1 Score: 147.132 bits (370), Expect = 9.188e-35 Identity = 78/138 (56.52%), Postives = 97/138 (70.29%), Query Frame = 2 Query: 107 GMGAGRKLKTHRRTQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 514 G AGRKLK R+ RW+D YK+ L E P G+ A+GIVLEKI +EA QPNS +RK VQLIKNGK + AF P DG +N+I+E+DEV+I G G KG ++GDIPG+R+KVVKV+ VSL L K +KEKPR Sbjct: 9 GEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAINFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_THEPD (30S ribosomal protein S12P OS=Thermofilum pendens (strain Hrk 5) GN=rps12p PE=3 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 2.047e-34 Identity = 73/138 (52.90%), Postives = 100/138 (72.46%), Query Frame = 2 Query: 104 RGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 511 RGM A RKL+ R+ RW+D YK+ L + K P G+ A+GIV+EK+GIE+ QPNSA+RKC VQL+KNGK + AF+P DG L ++ E+DEV+I G G +G A GD+PGVR+KV+KV+GVSL + + +K+KP Sbjct: 8 RGMFAARKLELKRKKFRWSDLEYKRRILQLKKKVDPLEGAPQARGIVVEKVGIESRQPNSAVRKCVRVQLLKNGKVVTAFLPGDGALLFVNEHDEVVIEGIGGPEGRAYGDLPGVRWKVIKVNGVSLKEILRGRKQKP 145
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_HALWD (30S ribosomal protein S12P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps12p PE=3 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 2.047e-34 Identity = 75/137 (54.74%), Postives = 95/137 (69.34%), Query Frame = 2 Query: 107 GMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 511 G A RKLK R+ +RW+D Y + G K P G+ +GIVLEK+GIEA QPNSAIRKC VQLIKNGK++ AF P DG +++I+E+DEV IAG G KG A+GD+ GV +KV KV+GVSL+ L + EKP Sbjct: 4 GKYAARKLKQDRQQRRWSDSEYARRERGLGAKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIELVRGNAEKP 140
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_HALMA (30S ribosomal protein S12P OS=Haloarcula marismortui GN=rps12p PE=3 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 3.491e-34 Identity = 75/137 (54.74%), Postives = 94/137 (68.61%), Query Frame = 2 Query: 107 GMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 511 G A RKLK R+ RW+D Y + G K P G+ +GIVLEK+GIEA QPNSAIRKC VQLIKNGK++ AF P DG +++I+E+DEV IAG G KG A+GD+ GV +KV KV+GVSL+ L + EKP Sbjct: 4 GKYAARKLKKDRQKHRWSDTDYARRERGLGKKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIELVRGNAEKP 140
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_SULAC (30S ribosomal protein S12P OS=Sulfolobus acidocaldarius GN=rps12p PE=3 SV=3) HSP 1 Score: 144.821 bits (364), Expect = 4.560e-34 Identity = 74/138 (53.62%), Postives = 102/138 (73.91%), Query Frame = 2 Query: 104 RGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 511 +G+ A RKL+ R W+ +S+K+ L + K P G+ A+GIVLEK+GIE+ QPNSA+RK VQL+KNG+ + AFVP DG +N+I+E+DEV+IAG G G ++GD+PGVR+KVV V+GVSL AL+K KK+KP Sbjct: 8 KGLFAARKLRLKRLKFSWSQRSFKRRMLALKEKFDPLEGAPMARGIVLEKVGIESRQPNSAVRKAVRVQLVKNGRIVTAFVPGDGGVNFIDEHDEVVIAGIGGTLGRSMGDLPGVRYKVVMVNGVSLDALYKGKKQKP 145
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_PYRFU (30S ribosomal protein S12P OS=Pyrococcus furiosus GN=rps12p PE=3 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 4.560e-34 Identity = 77/138 (55.80%), Postives = 96/138 (69.57%), Query Frame = 2 Query: 107 GMGAGRKLKTHRRTQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 514 G AGRKLK R+ RW+D YK+ L E P G+ A+GIVLEKI +EA QPNS +RK VQLIKNGK + AF P DG + +I+E+DEV+I G G KG ++GDIPG+R+KVVKV+ VSL L K +KEKPR Sbjct: 9 GEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146 The following BLAST results are available for this feature:
BLAST of CK934899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934899 ID=CK934899; Name=CK934899; organism=Citrus sinensis; type=EST; length=740bpback to top |