CK934899
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_PYRAB (30S ribosomal protein S12P OS=Pyrococcus abyssi GN=rps12p PE=3 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 4.560e-34 Identity = 77/138 (55.80%), Postives = 96/138 (69.57%), Query Frame = 2 Query: 107 GMGAGRKLKTHRRTQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 514 G AGRKLK R+ RW+D YK+ L E P G+ A+GIVLEKI +EA QPNS +RK VQLIKNGK + AF P DG + +I+E+DEV+I G G KG ++GDIPG+R+KVVKV+ VSL L K +KEKPR Sbjct: 9 GEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_NATPD (30S ribosomal protein S12P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps12p PE=3 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 4.560e-34 Identity = 75/137 (54.74%), Postives = 94/137 (68.61%), Query Frame = 2 Query: 107 GMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 511 G A RKLK R+ RW+D Y + G K P G+ +GIVLEK+GIEA QPNSAIRKC VQLIKNGK++ AF P DG +++I+E+DEV IAG G KG A+GD+ GV +KV KV+GVSL+ L + EKP Sbjct: 4 GKYAARKLKQDRQKHRWSDSDYARRARGLGKKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIELVRGNAEKP 140
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_IGNH4 (30S ribosomal protein S12P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps12p PE=3 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 4.560e-34 Identity = 75/137 (54.74%), Postives = 99/137 (72.26%), Query Frame = 2 Query: 107 GMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 511 G+ A RKL+ R RW+ + +K+ L + K P G+ A+GIVLEK+G+EA +PNSA+RKC VQL+KNGK + AFVP DG LN I E+DEV+I G G +G ++GDIPGVR+KVV V+GVSL A+ K KK+KP Sbjct: 9 GLFAARKLERKRLKFRWSQREFKRRMLKLKEKYDPLEGAPMARGIVLEKVGVEARKPNSAVRKCVRVQLVKNGKVVTAFVPGDGGLNVISEHDEVVIVGIGGPRGRSMGDIPGVRYKVVLVNGVSLDAILKGKKQKP 145
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_METTH (30S ribosomal protein S12P OS=Methanobacterium thermoautotrophicum GN=rps12p PE=3 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 5.955e-34 Identity = 74/137 (54.01%), Postives = 97/137 (70.80%), Query Frame = 2 Query: 107 GMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 511 G+ A +KLK+ R+ +W D YK+ L + K P G+ A+GIV+EK+GIEA QPNSAIRKC VQLIKNGK+I AF P DG + +I+E+DEV++ G G G ++GDIPGVR+KV KV+ VSL + K K EKP Sbjct: 3 GLFAAKKLKSKRQKFKWKDTHYKRRSLRLDVKADPLEGAPQARGIVIEKVGIEAKQPNSAIRKCVRVQLIKNGKQITAFAPGDGAIGFIDEHDEVVVEGIGGPSGRSMGDIPGVRWKVTKVNNVSLQEMVKGKIEKP 139
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_SULTO (30S ribosomal protein S12P OS=Sulfolobus tokodaii GN=rps12p PE=3 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 7.778e-34 Identity = 73/138 (52.90%), Postives = 101/138 (73.19%), Query Frame = 2 Query: 104 RGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 511 +GM A RKL+ R RW + +K+ L + K P G+ A+G+VLEK+GIE+ QPNSA+RK VQL+KNG+ + AFVP DG +N+I+E+DEV+IAG G G ++GD+PGVR+KV+ V+GVSL AL+K KK+KP Sbjct: 8 KGMFAARKLRLKRLKFRWHQRKFKRRMLKLKEKFDPLEGAPMARGVVLEKVGIESRQPNSAVRKAVRVQLVKNGRIVTAFVPGDGGVNFIDEHDEVVIAGIGGTLGRSMGDLPGVRYKVIMVNGVSLDALYKGKKQKP 145
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_HYPBU (30S ribosomal protein S12P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps12p PE=3 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.733e-33 Identity = 73/138 (52.90%), Postives = 101/138 (73.19%), Query Frame = 2 Query: 107 GMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 514 G+ A RKL+ R RW+++ +K LG + K P G+ A+GIVLEK+G+EA QPNSA+RKC VQLIKNG+ + AFVP DG L ++E+DEVLI G G +G ++GDIPGVR++VV V+GVSL A+ + +K+KP+ Sbjct: 9 GLFAARKLRRKRLKFRWSEREFKIRMLGLKKKYDPLEGAPMARGIVLEKVGVEARQPNSAVRKCVRVQLIKNGRIVTAFVPGDGGLLVVDEHDEVLIEGIGGPRGRSMGDIPGVRYRVVTVNGVSLRAILEGRKQKPQ 146
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_ARCFU (30S ribosomal protein S12P OS=Archaeoglobus fulgidus GN=rps12p PE=3 SV=2) HSP 1 Score: 142.895 bits (359), Expect = 1.733e-33 Identity = 75/137 (54.74%), Postives = 98/137 (71.53%), Query Frame = 2 Query: 104 RGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 508 RG+ A RKL +R+ RW+D+ + + LG K P G+ A+GIVLEKIGIEA QPNSAIRK VQLIKNG++I AF P DG +N+I+E+DEV++ GR G ++GDIPGVR+KVVKV+ SL L + +KEK Sbjct: 3 RGLFAARKLMENRKKFRWSDRRFVRRTLGLAAKADPLEGAPMARGIVLEKIGIEARQPNSAIRKAVRVQLIKNGRQITAFCPGDGAINFIDEHDEVIVEKIGGRMGRSMGDIPGVRYKVVKVNNTSLRELVRGRKEK 139
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_UNCMA (30S ribosomal protein S12P OS=Uncultured methanogenic archaeon RC-I GN=rps12p PE=3 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 5.042e-33 Identity = 74/137 (54.01%), Postives = 95/137 (69.34%), Query Frame = 2 Query: 107 GMGAGRKLKTHRRTQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 511 G A RKL R+ RW+D+ Y + L +E P G+ AKGIVLEK+G+EA QPNSAIRKC +QLIKNG++I AF P DG +N+I+E+DEV I G GR G + GDIPGVRF+V KV+ VSL + K++KP Sbjct: 4 GKFACRKLVHDRKLYRWSDRDYARRVLRLDEKADPLEGAPQAKGIVLEKVGVEAKQPNSAIRKCIRIQLIKNGRQITAFCPGDGAINFIDEHDEVTIEGIGGRMGGSYGDIPGVRFRVFKVNDVSLEEMVAGKRDKP 140
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_METMJ (30S ribosomal protein S12P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps12p PE=3 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 5.042e-33 Identity = 74/138 (53.62%), Postives = 91/138 (65.94%), Query Frame = 2 Query: 107 GMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 514 G A RKLK RW D Y + LG + K P G+ +GIVLEK+G+EA QPNSAIRKC VQLIKNG+++ AF DG +N+I+E+DEV I G GR G + GDIPGVRF V KV+ VSL + +KEKPR Sbjct: 4 GKFAARKLKRDANNNRWHDTGYARRQLGLDVKADPLEGAPQGRGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFAVGDGAINFIDEHDEVEIEGIGGRLGRSKGDIPGVRFVVTKVNNVSLREMVTGRKEKPR 141
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_AERPE (30S ribosomal protein S12P OS=Aeropyrum pernix GN=rps12p PE=3 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 5.042e-33 Identity = 72/138 (52.17%), Postives = 100/138 (72.46%), Query Frame = 2 Query: 107 GMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 514 G+ A RKL+ R RW+ + ++ L + K P G+ A+GIVLEK+G+EA QPNSA+RKC VQL+KN K + AFVP DG + Y++E+DEV+I G G +G ++GDIPGVR++VV V+GVSL AL++ KK+KPR Sbjct: 9 GLFAARKLRRKRLKFRWSQREFRIRMLDLKRKYDPLEGAPMARGIVLEKVGVEARQPNSALRKCVRVQLVKNKKVVTAFVPRDGGILYVDEHDEVIIEGIGGPRGRSMGDIPGVRYRVVMVNGVSLKALWEGKKQKPR 146 The following BLAST results are available for this feature:
BLAST of CK934899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934899 ID=CK934899; Name=CK934899; organism=Citrus sinensis; type=EST; length=740bpback to top |