CK934899
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_SULSO (30S ribosomal protein S12P OS=Sulfolobus solfataricus GN=rps12p PE=3 SV=2) HSP 1 Score: 140.969 bits (354), Expect = 6.585e-33 Identity = 72/138 (52.17%), Postives = 100/138 (72.46%), Query Frame = 2 Query: 104 RGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 511 +G+ A RKL+ R R + + YK L + K P G+ A+GIVLEK+GIE+ QPNSA+RKC VQL++NG+ + AFVP DG +N+I+E+DEV+I G G G ++GD+PGVR+KV+ V+GVSL AL+K KK+KP Sbjct: 8 KGIYAARKLRLKRLKFRRSQRKYKTKILKLKEKYDPLGGAPMARGIVLEKVGIESRQPNSAVRKCVRVQLVRNGRVVTAFVPGDGGVNFIDEHDEVIITGIGGTLGRSMGDLPGVRYKVIMVNGVSLDALYKGKKQKP 145
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_METS3 (30S ribosomal protein S12P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps12p PE=3 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 6.585e-33 Identity = 72/137 (52.55%), Postives = 96/137 (70.07%), Query Frame = 2 Query: 107 GMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 511 G+ A +KLK +R+ +W D YK+ L + K P G+ A+GIV+EK+GIEA QPNSAIRKC VQLIKNGK++ AF P DG + +I+E+DEV+I G G G ++GDIPGVR+KV KV+ V+L + K EKP Sbjct: 3 GLFAAKKLKKNRQNFKWKDVDYKRKALRLDVKADPLEGAPQARGIVIEKVGIEAKQPNSAIRKCVRVQLIKNGKQLTAFAPGDGAIGFIDEHDEVMIEGIGGPSGRSMGDIPGVRWKVSKVNNVALSEMVSGKIEKP 139
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_METTP (30S ribosomal protein S12P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps12p PE=3 SV=2) HSP 1 Score: 140.584 bits (353), Expect = 8.600e-33 Identity = 70/137 (51.09%), Postives = 96/137 (70.07%), Query Frame = 2 Query: 107 GMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 511 G+ A RK++ + RW+D Y + LG + K P G+ A+GIVLEK+G+EA QPNSAIRKC +QLIKNG+++ AF P DG + +I+E+DEV++ GR G ++GDIPGVRFKVV V+ VSL + +KEKP Sbjct: 4 GINAARKMEDDWKKLRWSDPHYCRRALGLKVKADPLGGAPRARGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQVTAFCPGDGAIGFIDEHDEVVVERIGGRMGRSMGDIPGVRFKVVAVNNVSLEEMVSGRKEKP 140
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_METBU (30S ribosomal protein S12P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps12p PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 8.600e-33 Identity = 71/138 (51.45%), Postives = 94/138 (68.12%), Query Frame = 2 Query: 107 GMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 514 G A +L+ R+ RW D Y + LG + K P +G+ +GIVLEK+G+EA QPNSAIRKC +QLIKNG++ AF P DG +N+I+E+DEV + GR G A+GDIPGVRFKV+ V+ VSL + +KEKPR Sbjct: 4 GKYAAHRLQQVRKDARWKDTGYSRRTLGLDIKSDPLSGAPQGRGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQATAFCPGDGAINFIDEHDEVTVERIGGRMGGAMGDIPGVRFKVIAVNNVSLREMVIGRKEKPR 141
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_HALMO (30S ribosomal protein S12P OS=Halococcus morrhuae GN=rps12p PE=3 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 1.916e-32 Identity = 72/137 (52.55%), Postives = 92/137 (67.15%), Query Frame = 2 Query: 107 GMGAGRKLKTHRRTQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 511 G A RKLK R+ RW+D Y + G E G+ +GIVLEK+GIEA QPNSAIRKC VQLIKNG+++ AF P DG +++I+E+DEV IAG G KG A+GD+ V +KV KV+GVSL+ L + EKP Sbjct: 4 GKYAARKLKKDRQNHRWSDSKYARRARGLKEKTDALEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGQQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSAVNYKVEKVNGVSLIELVRGNAEKP 140
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_METAC (30S ribosomal protein S12P OS=Methanosarcina acetivorans GN=rps12p PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 5.574e-32 Identity = 73/139 (52.52%), Postives = 92/139 (66.19%), Query Frame = 2 Query: 104 RGMGAGRKLKTHRRTQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 514 +G A LK R+ RW D Y + LG N P G+ +GIVLEK+G+EA QPNSAIRKC VQLIKNG+++ AF P DG +N+I+E+DEV + GR G A+GDIPGVRFKV+ V+ VSL L + EKPR Sbjct: 3 KGKYAANILKQTRKDARWKDTYYGRRVLGLNVKADPLGGAPQGRGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFCPGDGAVNFIDEHDEVTVEKIGGRMGGAMGDIPGVRFKVIAVNNVSLNQLVIGRMEKPR 141
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_METMA (30S ribosomal protein S12P OS=Methanosarcina mazei GN=rps12p PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 9.508e-32 Identity = 72/139 (51.80%), Postives = 92/139 (66.19%), Query Frame = 2 Query: 104 RGMGAGRKLKTHRRTQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 514 +G A LK R+ RW D Y + LG N P G+ +GIVLEK+G+EA QPNSAIRKC +QLIKNG+++ AF P DG +N+I+E+DEV + GR G A+GDIPGVRFKV+ V+ VSL L + EKPR Sbjct: 3 KGKYAANILKQTRKDARWKDTYYGRRVLGLNVKADPLGGAPQGRGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQVTAFCPGDGAVNFIDEHDEVTVERIGGRMGGAMGDIPGVRFKVIAVNNVSLNQLVIGRLEKPR 141
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_METBF (30S ribosomal protein S12P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps12p PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.242e-31 Identity = 71/139 (51.08%), Postives = 92/139 (66.19%), Query Frame = 2 Query: 104 RGMGAGRKLKTHRRTQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 514 +G A LK R+ RW D SY + LG N P G+ +GIVLEK+G+EA QPNSAIRKC +QLIKNG+++ AF P DG +N+I+E+DEV + GR G A+GDIPGVRF+V V+ VSL + + EKPR Sbjct: 3 KGKYAANILKQTRKNARWKDTSYGRRVLGLNVKADPLGGAPQGRGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQVTAFCPGDGAVNFIDEHDEVTVERIGGRMGGAMGDIPGVRFRVTAVNNVSLNQMVIGRLEKPR 141
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_METB6 (30S ribosomal protein S12P OS=Methanoregula boonei (strain 6A8) GN=rps12p PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.242e-31 Identity = 71/139 (51.08%), Postives = 94/139 (67.63%), Query Frame = 2 Query: 104 RGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 514 +G A RKL + RW+DK+Y + L + K P G+ A+GIVLEK+G+EA QPNSAIRKC VQLIKNG+++ AF DG +N+I+E+DEV I G GR G ++GDIPGVR+ V V+ V L + +KEKPR Sbjct: 3 QGKFAARKLVRDSKKFRWSDKNYARRELNLDVKSDPLEGAPQARGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFAVGDGAINFIDEHDEVEIEGIGGRLGRSMGDIPGVRYVVTSVNNVCLHEMVIGRKEKPR 141
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_METHJ (30S ribosomal protein S12P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps12p PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 2.118e-31 Identity = 73/139 (52.52%), Postives = 94/139 (67.63%), Query Frame = 2 Query: 104 RGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 514 +G A RKLK RW+D + ++ G + K P G+ +GIVLEKIG+EA QPNSAIRKC VQLIKNG++++AF DG +N+I+E+DEV I G GR G ++GDIPGVRF V KV+ V L L +KEKPR Sbjct: 3 QGKFAARKLKRDSARFRWSDPHFARTAGGLKLKSDPLEGAPQGRGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGRQVSAFAVGDGAINFIDEHDEVEIEGIGGRLGRSMGDIPGVRFVVTKVNNVCLHELVIGRKEKPR 141 The following BLAST results are available for this feature:
BLAST of CK934899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934899 ID=CK934899; Name=CK934899; organism=Citrus sinensis; type=EST; length=740bpback to top |