CK934899

Overview
NameCK934899
Unique NameCK934899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_SULSO (30S ribosomal protein S12P OS=Sulfolobus solfataricus GN=rps12p PE=3 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 6.585e-33
Identity = 72/138 (52.17%), Postives = 100/138 (72.46%), Query Frame = 2
Query:  104 RGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 511
            +G+ A RKL+  R   R + + YK   L  + K  P  G+  A+GIVLEK+GIE+ QPNSA+RKC  VQL++NG+ + AFVP DG +N+I+E+DEV+I G  G  G ++GD+PGVR+KV+ V+GVSL AL+K KK+KP
Sbjct:    8 KGIYAARKLRLKRLKFRRSQRKYKTKILKLKEKYDPLGGAPMARGIVLEKVGIESRQPNSAVRKCVRVQLVRNGRVVTAFVPGDGGVNFIDEHDEVIITGIGGTLGRSMGDLPGVRYKVIMVNGVSLDALYKGKKQKP 145          
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_METS3 (30S ribosomal protein S12P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps12p PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.585e-33
Identity = 72/137 (52.55%), Postives = 96/137 (70.07%), Query Frame = 2
Query:  107 GMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 511
            G+ A +KLK +R+  +W D  YK+  L  + K  P  G+  A+GIV+EK+GIEA QPNSAIRKC  VQLIKNGK++ AF P DG + +I+E+DEV+I G  G  G ++GDIPGVR+KV KV+ V+L  +   K EKP
Sbjct:    3 GLFAAKKLKKNRQNFKWKDVDYKRKALRLDVKADPLEGAPQARGIVIEKVGIEAKQPNSAIRKCVRVQLIKNGKQLTAFAPGDGAIGFIDEHDEVMIEGIGGPSGRSMGDIPGVRWKVSKVNNVALSEMVSGKIEKP 139          
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_METTP (30S ribosomal protein S12P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps12p PE=3 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 8.600e-33
Identity = 70/137 (51.09%), Postives = 96/137 (70.07%), Query Frame = 2
Query:  107 GMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 511
            G+ A RK++   +  RW+D  Y +  LG + K  P  G+  A+GIVLEK+G+EA QPNSAIRKC  +QLIKNG+++ AF P DG + +I+E+DEV++    GR G ++GDIPGVRFKVV V+ VSL  +   +KEKP
Sbjct:    4 GINAARKMEDDWKKLRWSDPHYCRRALGLKVKADPLGGAPRARGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQVTAFCPGDGAIGFIDEHDEVVVERIGGRMGRSMGDIPGVRFKVVAVNNVSLEEMVSGRKEKP 140          
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_METBU (30S ribosomal protein S12P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps12p PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.600e-33
Identity = 71/138 (51.45%), Postives = 94/138 (68.12%), Query Frame = 2
Query:  107 GMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 514
            G  A  +L+  R+  RW D  Y +  LG + K  P +G+   +GIVLEK+G+EA QPNSAIRKC  +QLIKNG++  AF P DG +N+I+E+DEV +    GR G A+GDIPGVRFKV+ V+ VSL  +   +KEKPR
Sbjct:    4 GKYAAHRLQQVRKDARWKDTGYSRRTLGLDIKSDPLSGAPQGRGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQATAFCPGDGAINFIDEHDEVTVERIGGRMGGAMGDIPGVRFKVIAVNNVSLREMVIGRKEKPR 141          
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_HALMO (30S ribosomal protein S12P OS=Halococcus morrhuae GN=rps12p PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.916e-32
Identity = 72/137 (52.55%), Postives = 92/137 (67.15%), Query Frame = 2
Query:  107 GMGAGRKLKTHRRTQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 511
            G  A RKLK  R+  RW+D  Y +   G  E      G+   +GIVLEK+GIEA QPNSAIRKC  VQLIKNG+++ AF P DG +++I+E+DEV IAG  G KG A+GD+  V +KV KV+GVSL+ L +   EKP
Sbjct:    4 GKYAARKLKKDRQNHRWSDSKYARRARGLKEKTDALEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGQQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSAVNYKVEKVNGVSLIELVRGNAEKP 140          
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_METAC (30S ribosomal protein S12P OS=Methanosarcina acetivorans GN=rps12p PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.574e-32
Identity = 73/139 (52.52%), Postives = 92/139 (66.19%), Query Frame = 2
Query:  104 RGMGAGRKLKTHRRTQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 514
            +G  A   LK  R+  RW D  Y +  LG N    P  G+   +GIVLEK+G+EA QPNSAIRKC  VQLIKNG+++ AF P DG +N+I+E+DEV +    GR G A+GDIPGVRFKV+ V+ VSL  L   + EKPR
Sbjct:    3 KGKYAANILKQTRKDARWKDTYYGRRVLGLNVKADPLGGAPQGRGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFCPGDGAVNFIDEHDEVTVEKIGGRMGGAMGDIPGVRFKVIAVNNVSLNQLVIGRMEKPR 141          
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_METMA (30S ribosomal protein S12P OS=Methanosarcina mazei GN=rps12p PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.508e-32
Identity = 72/139 (51.80%), Postives = 92/139 (66.19%), Query Frame = 2
Query:  104 RGMGAGRKLKTHRRTQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 514
            +G  A   LK  R+  RW D  Y +  LG N    P  G+   +GIVLEK+G+EA QPNSAIRKC  +QLIKNG+++ AF P DG +N+I+E+DEV +    GR G A+GDIPGVRFKV+ V+ VSL  L   + EKPR
Sbjct:    3 KGKYAANILKQTRKDARWKDTYYGRRVLGLNVKADPLGGAPQGRGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQVTAFCPGDGAVNFIDEHDEVTVERIGGRMGGAMGDIPGVRFKVIAVNNVSLNQLVIGRLEKPR 141          
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_METBF (30S ribosomal protein S12P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps12p PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.242e-31
Identity = 71/139 (51.08%), Postives = 92/139 (66.19%), Query Frame = 2
Query:  104 RGMGAGRKLKTHRRTQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 514
            +G  A   LK  R+  RW D SY +  LG N    P  G+   +GIVLEK+G+EA QPNSAIRKC  +QLIKNG+++ AF P DG +N+I+E+DEV +    GR G A+GDIPGVRF+V  V+ VSL  +   + EKPR
Sbjct:    3 KGKYAANILKQTRKNARWKDTSYGRRVLGLNVKADPLGGAPQGRGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQVTAFCPGDGAVNFIDEHDEVTVERIGGRMGGAMGDIPGVRFRVTAVNNVSLNQMVIGRLEKPR 141          
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_METB6 (30S ribosomal protein S12P OS=Methanoregula boonei (strain 6A8) GN=rps12p PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.242e-31
Identity = 71/139 (51.08%), Postives = 94/139 (67.63%), Query Frame = 2
Query:  104 RGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 514
            +G  A RKL    +  RW+DK+Y +  L  + K  P  G+  A+GIVLEK+G+EA QPNSAIRKC  VQLIKNG+++ AF   DG +N+I+E+DEV I G  GR G ++GDIPGVR+ V  V+ V L  +   +KEKPR
Sbjct:    3 QGKFAARKLVRDSKKFRWSDKNYARRELNLDVKSDPLEGAPQARGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFAVGDGAINFIDEHDEVEIEGIGGRLGRSMGDIPGVRYVVTSVNNVCLHEMVIGRKEKPR 141          
BLAST of CK934899 vs. ExPASy Swiss-Prot
Match: RS12_METHJ (30S ribosomal protein S12P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps12p PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.118e-31
Identity = 73/139 (52.52%), Postives = 94/139 (67.63%), Query Frame = 2
Query:  104 RGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEANQPNSAIRKCATVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 514
            +G  A RKLK      RW+D  + ++  G + K  P  G+   +GIVLEKIG+EA QPNSAIRKC  VQLIKNG++++AF   DG +N+I+E+DEV I G  GR G ++GDIPGVRF V KV+ V L  L   +KEKPR
Sbjct:    3 QGKFAARKLKRDSARFRWSDPHFARTAGGLKLKSDPLEGAPQGRGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGRQVSAFAVGDGAINFIDEHDEVEIEGIGGRLGRSMGDIPGVRFVVTKVNNVCLHELVIGRKEKPR 141          
The following BLAST results are available for this feature:
BLAST of CK934899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS12_SULSO6.585e-3352.1730S ribosomal protein S12P OS=Sulfolobus solfatari... [more]
RS12_METS36.585e-3352.5530S ribosomal protein S12P OS=Methanobrevibacter s... [more]
RS12_METTP8.600e-3351.0930S ribosomal protein S12P OS=Methanosaeta thermop... [more]
RS12_METBU8.600e-3351.4530S ribosomal protein S12P OS=Methanococcoides bur... [more]
RS12_HALMO1.916e-3252.5530S ribosomal protein S12P OS=Halococcus morrhuae ... [more]
RS12_METAC5.574e-3252.5230S ribosomal protein S12P OS=Methanosarcina aceti... [more]
RS12_METMA9.508e-3251.8030S ribosomal protein S12P OS=Methanosarcina mazei... [more]
RS12_METBF1.242e-3151.0830S ribosomal protein S12P OS=Methanosarcina barke... [more]
RS12_METB61.242e-3151.0830S ribosomal protein S12P OS=Methanoregula boonei... [more]
RS12_METHJ2.118e-3152.5230S ribosomal protein S12P OS=Methanospirillum hun... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004225_E04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IVF_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934899 ID=CK934899; Name=CK934899; organism=Citrus sinensis; type=EST; length=740bp
GGGGAGGGTTTTACTAAGCGGCTGGTGTTTCTTCTCTTCGCCTTAACTTC
TACACAGCCTCGTAGCAGTCGAGTAACTACAATCAGGAATCATGGGGAAG
ACACGTGGTATGGGAGCTGGTCGCAAGCTGAAGACTCACCGTAGGACTCA
AAGGTGGGCTGATAAGTCATACAAAAAGTCTCACCTCGGCAATGAGTGGA
AGAAGCCATTTGCTGGTTCTTCCCATGCTAAAGGAATTGTTCTTGAGAAG
ATAGGTATTGAAGCTAACCAGCCTAACTCTGCTATTCGTAAGTGTGCTAC
AGTTCAACTTATCAAAAACGGAAAGAAGATTGCCGCTTTTGTTCCAAATG
ATGGTTGCTTGAACTATATTGAAGAAAATGATGAGGTGTTGATTGCTGGA
TTTGGACGTAAGGGACATGCGGTCGGTGATATTCCCGGTGTCAGGTTCAA
GGTTGTGAAGGTCTCTGGTGTCTCTCTCTTGGCTCTCTTCAAAGAAAAGA
AAGAGAAGCCCAGGTCTTAAGATAAGAGACCTGTCTTAACCTGCAAACTC
TTTGATAGTTCTTTTAAAGAATTCGGATTGTCACTTTTTGTTATCGAGTG
GATTTATGAACAATTTTTTATCAATTGTCTAGTCAATGTATTGCTGTGGT
ACAATTTTGACTCTAGAATTGATATTTGGTCAATCAGTTCAAATGGCTGT
CATTCTTCTCTTAAATGAATTATAATTGCTCACTATTCTC
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