EY720100 | Citrus Genome Database

Overview


Name	EY720100
Unique Name	EY720100
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	895

Libraries


Library Name	Type
Sweet orange fruit, development stadium (4 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.682e-45
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 1

Query:  343 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   51 WYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 102

HSP 2 Score: 95.9005 bits (237), Expect = 7.682e-45
Identity = 56/102 (54.90%), Postives = 65/102 (63.73%), Query Frame = 2

Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSWD-PGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEG LDYLGNP+L   ++    W       GA  G+RI G P+ E   PL     FDPLGL
Sbjct:  101 VIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGL 201

[Close]

BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.682e-45
Identity = 47/58 (81.03%), Postives = 49/58 (84.48%), Query Frame = 1

Query:  325 VQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            V     WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   45 VSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 102

HSP 2 Score: 95.9005 bits (237), Expect = 7.682e-45
Identity = 55/102 (53.92%), Postives = 65/102 (63.73%), Query Frame = 2

Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSWD-PGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEG LDYLGNP+L   ++    W       GA  G+R+ G P+ E   PL     FDPLGL
Sbjct:  101 VIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDPLYPGGSFDPLGL 201

[Close]

BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 7.684e-45
Identity = 48/53 (90.57%), Postives = 49/53 (92.45%), Query Frame = 1

Query:  340 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            +WYGPDR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVI
Sbjct:   46 IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVI 98

HSP 2 Score: 93.9745 bits (232), Expect = 7.684e-45
Identity = 54/102 (52.94%), Postives = 62/102 (60.78%), Query Frame = 2

Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSWDPGXP-HGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+L K   V F E VWFKAGAQIFSEG LDYLGNP L   ++    W       G   G+R+ G P+ E    +     FDPLGL
Sbjct:   97 VIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGL 197

[Close]

BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 7.684e-45
Identity = 48/53 (90.57%), Postives = 49/53 (92.45%), Query Frame = 1

Query:  340 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            +WYGPDR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVI
Sbjct:   46 IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVI 98

HSP 2 Score: 93.9745 bits (232), Expect = 7.684e-45
Identity = 54/102 (52.94%), Postives = 62/102 (60.78%), Query Frame = 2

Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSWDPGXP-HGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+L K   V F E VWFKAGAQIFSEG LDYLGNP L   ++    W       G   G+R+ G P+ E    +     FDPLGL
Sbjct:   97 VIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGL 197

[Close]

BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.684e-45
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 1

Query:  325 VQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            V  +  WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   43 VASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 100

HSP 2 Score: 95.5153 bits (236), Expect = 7.684e-45
Identity = 55/102 (53.92%), Postives = 65/102 (63.73%), Query Frame = 2

Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSWD-PGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEG LDYLGNP+L   ++    W       GA  G+R+ G P+ E   PL     FDPLGL
Sbjct:   99 VIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGL 199

[Close]

BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.684e-45
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 1

Query:  343 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   49 WYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 100

HSP 2 Score: 95.9005 bits (237), Expect = 7.684e-45
Identity = 56/102 (54.90%), Postives = 65/102 (63.73%), Query Frame = 2

Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSWD-PGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEG LDYLGNP+L   ++    W       GA  G+RI G P+ E   PL     FDPLGL
Sbjct:   99 VIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGL 199

[Close]

BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.684e-45
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 1

Query:  343 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   48 WYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 99

HSP 2 Score: 96.2857 bits (238), Expect = 7.684e-45
Identity = 55/102 (53.92%), Postives = 65/102 (63.73%), Query Frame = 2

Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSW-DPGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEG LDYLGNP+L   ++    W       GA  G+R+ G P+ E   PL     FDPLGL
Sbjct:   98 VIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGL 198

[Close]

BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.684e-45
Identity = 47/53 (88.68%), Postives = 48/53 (90.57%), Query Frame = 1

Query:  340 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            +WYGPDR KYLGPFS Q PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVI
Sbjct:   48 IWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVI 100

HSP 2 Score: 96.2857 bits (238), Expect = 7.684e-45
Identity = 55/102 (53.92%), Postives = 63/102 (61.76%), Query Frame = 2

Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSWDPGXP-HGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC  PE+LEK   V F E VWFKAG+QIF+EG LDYLGNP L   ++    W       G   G+R+ G P+ E   PL     FDPLGL
Sbjct:   99 VIHSRWAMLGALGCTFPELLEK-NGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGL 199

[Close]

BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.001e-44
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 1

Query:  343 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   51 WYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 102

HSP 2 Score: 95.5153 bits (236), Expect = 1.001e-44
Identity = 55/102 (53.92%), Postives = 65/102 (63.73%), Query Frame = 2

Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSWD-PGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEG LDYLGNP+L   ++    W       GA  G+R+ G P+ E   PL     FDPLGL
Sbjct:  101 VIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGL 201

[Close]

BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.701e-44
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 1

Query:  343 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   48 WYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 99

HSP 2 Score: 94.7449 bits (234), Expect = 1.701e-44
Identity = 54/102 (52.94%), Postives = 64/102 (62.75%), Query Frame = 2

Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSWD-PGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIHGRWAMLGALGC+ PE+L +   V F E VWFK G+QIFSEG L YLGNP+L   ++    W       GA  G+R+ G P+ E   PL     FDPLGL
Sbjct:   98 VIHGRWAMLGALGCVFPELLAR-NGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGL 198

The following BLAST results are available for this feature:

BLAST of EY720100 vs. ExPASy Swiss-Prot

BLAST of EY720100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59


Match Name	E-value	Identity	Description
CB2G_SOLLC	7.682e-45	88.46	Chlorophyll a-b binding protein 3C, chloroplastic ...	[more]
CB27_TOBAC	7.682e-45	81.03	Chlorophyll a-b binding protein 7, chloroplastic O...	[more]
CB23_ORYSJ	7.684e-45	90.57	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB23_ORYSI	7.684e-45	90.57	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB22_TOBAC	7.684e-45	81.03	Chlorophyll a-b binding protein 21, chloroplastic ...	[more]
CB2B_SOLLC	7.684e-45	88.46	Chlorophyll a-b binding protein 1B, chloroplastic ...	[more]
CB23_APIGR	7.684e-45	88.46	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB215_PEA	7.684e-45	88.68	Chlorophyll a-b binding protein 215, chloroplastic...	[more]
CB25_TOBAC	1.001e-44	88.46	Chlorophyll a-b binding protein 50, chloroplastic ...	[more]
CB22_HORVU	1.701e-44	88.46	Chlorophyll a-b binding protein 2, chloroplastic O...	[more]

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Properties


Property Name	Value
Genbank description	CS00-C3-703-002-A07-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY720100 ID=EY720100; Name=EY720100; organism=Citrus sinensis; type=EST; length=895bp
CACCCACGCGTCCGATCTCTCTTTCTGTATTGTCTTCAGACACATATTAA
CATCACAGTTCCAACCGACACAACATCCATAATAACAACTCTCAGGACAA
TGGCATCAATAATGGCGGCTGCTACTGCTAGCTCTAGCACTTCTCTTAGG
GCAACCCCATTTCTTGGCCAGAGTAGGACAACTGCTAACGCTCTAAAAGA
TGTTGTTCCGATGGGGAATGCCAAGTACACAATGGTAATAAGTTGGTAAC
CTTAACCTACACCTTCAGCCTTTTTGTCTCTCTTTGTCTCTGTGTTTAGG
GAAATTCATTGAAGATATTGTTGTGTTCAGGGAAATGAACTGTGGTATGG
GCCAGACAGGGTGAAGTACTTGGGACCCTTTTCAGCACAGACTCCATCAT
ACTTGACTGGAGAGTTTCCAGGTGACTATGGATGGGACACTGCTGGTTTG
TCTGCTGATCCCGAGGCCTTTGCCAGGAACAGGGCTCTTGAGGTGATATT
CTTTCCTTCTTATTCTTGCCCTCTGTCGGCTGGTAATGTGGTTACAGCAA
CAAAGATATTGATACTACTATTTCAATTTGTAGGTGATCCATGGCAGGTG
GGCTATGCTTGGAGCACTAGGCTGCATCACCCCTGAAGTTCTCGAGAAAT
GGCTTAAAGTAGACTTCAAGGAACCGGTTTGGTTCAAAGCTGGAGCTCAG
ATTTTCTCAGAAGGGTGGCTTGACTACTTGGGAAACCCAACCTTGTTCAT
GCTCAAAGCATTCTGGCTGTCCTGGGATCCAGGTNGTCCTCATGGGGCTC
GTTGAGGGTTCCGTATCAATGGCCTCCCTGTGTCCGAAAAGGAACAACCT
CTACCCGGTTGCCANTATTTTGATCCCCTGGGCCTGCTGATAACC