EY720100

Overview
NameEY720100
Unique NameEY720100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.092e-62
Identity = 70/118 (59.32%), Postives = 80/118 (67.80%), Query Frame = 1
Query:  145 LRATPFLGQSRTTANALKDVVPMGNAKYTMVISW*P*PTPSAFLSLFVSVFREIH*RYCCVQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            ++ATPFLGQ++  AN L+DVV MG+A++TM                                 N+LWYGPDRVKYLGPFSAQTPSYL GEFPGDYGWDTAGLSADPEAFA+NRALEVI
Sbjct:   14 VKATPFLGQTKN-ANPLRDVVAMGSARFTM--------------------------------SNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVI 98          

HSP 2 Score: 127.102 bits (318), Expect = 1.092e-62
Identity = 68/103 (66.02%), Postives = 74/103 (71.84%), Query Frame = 2
Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFW-LSWDPGXPHGAR*GFRINGLP-VSEKEQPLPGCXYFDPLGL 886
            VIHGRWAMLGALGCI PEVLEKW+KVDFKEPVWFKAG+QIFS+G LDYLGNP L   ++   +        G   GFRINGLP V E     PG  YFDPLGL
Sbjct:   97 VIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGL 199          
BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.203e-45
Identity = 48/58 (82.76%), Postives = 52/58 (89.66%), Query Frame = 1
Query:  325 VQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            VQ +  WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   45 VQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 102          

HSP 2 Score: 95.9005 bits (237), Expect = 1.203e-45
Identity = 56/102 (54.90%), Postives = 65/102 (63.73%), Query Frame = 2
Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSWD-PGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEG LDYLGNP+L   ++    W       GA  G+RI G P+ E   PL     FDPLGL
Sbjct:  101 VIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGL 201          
BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.664e-45
Identity = 47/58 (81.03%), Postives = 49/58 (84.48%), Query Frame = 1
Query:  325 VQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            V     WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   41 VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 98          

HSP 2 Score: 97.8265 bits (242), Expect = 2.664e-45
Identity = 55/102 (53.92%), Postives = 65/102 (63.73%), Query Frame = 2
Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSW-DPGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEG LDYLGNP+L   ++    W       GA  G+RI G P+ E   P+     FDPLGL
Sbjct:   97 VIHSRWAMLGALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGL 197          
BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.472e-45
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 1
Query:  343 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   46 WYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 97          

HSP 2 Score: 97.8265 bits (242), Expect = 3.472e-45
Identity = 56/102 (54.90%), Postives = 65/102 (63.73%), Query Frame = 2
Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSWD-PGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEG LDYLGNP+L   ++    W       GA  G+RI G P+ E   PL     FDPLGL
Sbjct:   96 VIHSRWAMLGALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGL 196          
BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.523e-45
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 1
Query:  343 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE F++NR LEVI
Sbjct:   53 WYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVI 104          

HSP 2 Score: 97.8265 bits (242), Expect = 4.523e-45
Identity = 56/102 (54.90%), Postives = 65/102 (63.73%), Query Frame = 2
Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSW-DPGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEG LDYLGNP+L   ++    W       GA  G+RI G P+ E   PL     FDPLGL
Sbjct:  103 VIHSRWAMLGALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGL 203          
BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.523e-45
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 1
Query:  343 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE F++NR LEVI
Sbjct:   52 WYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVI 103          

HSP 2 Score: 97.8265 bits (242), Expect = 4.523e-45
Identity = 56/102 (54.90%), Postives = 65/102 (63.73%), Query Frame = 2
Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSW-DPGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEG LDYLGNP+L   ++    W       GA  G+RI G P+ E   PL     FDPLGL
Sbjct:  102 VIHSRWAMLGALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGL 202          
BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.527e-45
Identity = 47/58 (81.03%), Postives = 49/58 (84.48%), Query Frame = 1
Query:  325 VQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            V     WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   33 VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 90          

HSP 2 Score: 97.0561 bits (240), Expect = 4.527e-45
Identity = 55/102 (53.92%), Postives = 65/102 (63.73%), Query Frame = 2
Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSWD-PGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEG LDYLGNP+L   ++    W       GA  G+RI G P+ E   P+     FDPLGL
Sbjct:   89 VIHSRWAMLGALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGL 189          
BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.895e-45
Identity = 47/58 (81.03%), Postives = 50/58 (86.21%), Query Frame = 1
Query:  325 VQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            V     WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   44 VSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 101          

HSP 2 Score: 95.9005 bits (237), Expect = 5.895e-45
Identity = 55/102 (53.92%), Postives = 65/102 (63.73%), Query Frame = 2
Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSWD-PGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEG LDYLGNP+L   ++    W       GA  G+R+ G P+ E   PL     FDPLGL
Sbjct:  100 VIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGL 200          
BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.682e-45
Identity = 47/58 (81.03%), Postives = 50/58 (86.21%), Query Frame = 1
Query:  325 VQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            V     WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   45 VSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 102          

HSP 2 Score: 95.5153 bits (236), Expect = 7.682e-45
Identity = 55/102 (53.92%), Postives = 65/102 (63.73%), Query Frame = 2
Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSWD-PGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEG LDYLGNP+L   ++    W       GA  G+R+ G P+ E   PL     FDPLGL
Sbjct:  101 VIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGL 201          
BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.682e-45
Identity = 47/58 (81.03%), Postives = 50/58 (86.21%), Query Frame = 1
Query:  325 VQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            V     WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   44 VSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 101          

HSP 2 Score: 95.5153 bits (236), Expect = 7.682e-45
Identity = 55/102 (53.92%), Postives = 65/102 (63.73%), Query Frame = 2
Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSWD-PGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEG LDYLGNP+L   ++    W       GA  G+R+ G P+ E   PL     FDPLGL
Sbjct:  100 VIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGL 200          
The following BLAST results are available for this feature:
BLAST of EY720100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CB23_SOLLC1.092e-6259.32Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2A_SPIOL1.203e-4582.76Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_SOYBN2.664e-4581.03Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_MAIZE3.472e-4588.46Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB22_PEA4.523e-4586.54Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB28_PEA4.523e-4586.54Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB21_CUCSA4.527e-4581.03Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB25_NICPL5.895e-4581.03Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB24_TOBAC7.682e-4581.03Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB21_TOBAC7.682e-4581.03Chlorophyll a-b binding protein 16, chloroplastic ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-703-002-A07-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720100 ID=EY720100; Name=EY720100; organism=Citrus sinensis; type=EST; length=895bp
CACCCACGCGTCCGATCTCTCTTTCTGTATTGTCTTCAGACACATATTAA
CATCACAGTTCCAACCGACACAACATCCATAATAACAACTCTCAGGACAA
TGGCATCAATAATGGCGGCTGCTACTGCTAGCTCTAGCACTTCTCTTAGG
GCAACCCCATTTCTTGGCCAGAGTAGGACAACTGCTAACGCTCTAAAAGA
TGTTGTTCCGATGGGGAATGCCAAGTACACAATGGTAATAAGTTGGTAAC
CTTAACCTACACCTTCAGCCTTTTTGTCTCTCTTTGTCTCTGTGTTTAGG
GAAATTCATTGAAGATATTGTTGTGTTCAGGGAAATGAACTGTGGTATGG
GCCAGACAGGGTGAAGTACTTGGGACCCTTTTCAGCACAGACTCCATCAT
ACTTGACTGGAGAGTTTCCAGGTGACTATGGATGGGACACTGCTGGTTTG
TCTGCTGATCCCGAGGCCTTTGCCAGGAACAGGGCTCTTGAGGTGATATT
CTTTCCTTCTTATTCTTGCCCTCTGTCGGCTGGTAATGTGGTTACAGCAA
CAAAGATATTGATACTACTATTTCAATTTGTAGGTGATCCATGGCAGGTG
GGCTATGCTTGGAGCACTAGGCTGCATCACCCCTGAAGTTCTCGAGAAAT
GGCTTAAAGTAGACTTCAAGGAACCGGTTTGGTTCAAAGCTGGAGCTCAG
ATTTTCTCAGAAGGGTGGCTTGACTACTTGGGAAACCCAACCTTGTTCAT
GCTCAAAGCATTCTGGCTGTCCTGGGATCCAGGTNGTCCTCATGGGGCTC
GTTGAGGGTTCCGTATCAATGGCCTCCCTGTGTCCGAAAAGGAACAACCT
CTACCCGGTTGCCANTATTTTGATCCCCTGGGCCTGCTGATAACC
back to top