EY720100 | Citrus Genome Database

Overview


Name	EY720100
Unique Name	EY720100
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	895

Libraries


Library Name	Type
Sweet orange fruit, development stadium (4 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.763e-44
Identity = 47/58 (81.03%), Postives = 49/58 (84.48%), Query Frame = 1

Query:  325 VQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            V     WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   44 VSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 101

HSP 2 Score: 93.5893 bits (231), Expect = 3.763e-44
Identity = 54/102 (52.94%), Postives = 64/102 (62.75%), Query Frame = 2

Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSWD-PGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+  +   V F E VWFKAG+QIFSEG LDYLGNP+L   ++    W       GA  G+R+ G P+ E   PL     FDPLGL
Sbjct:  100 VIHCRWAMLGALGCVFPELFAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGL 200

[Close]

BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.905e-44
Identity = 46/53 (86.79%), Postives = 48/53 (90.57%), Query Frame = 1

Query:  340 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            +WYGPDR KYLGPFS Q PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   48 IWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 100

HSP 2 Score: 95.1301 bits (235), Expect = 4.905e-44
Identity = 54/102 (52.94%), Postives = 63/102 (61.76%), Query Frame = 2

Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSWD-PGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+L K   V F E VWFKAG+QIFSEG LDYLGNP L   ++    W       G   G+R+ G P+ E   P+     FDPLGL
Sbjct:   99 VIHCRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGL 199

[Close]

BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.916e-44
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 1

Query:  343 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            W+GPD VKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   12 WHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 63

HSP 2 Score: 97.8265 bits (242), Expect = 4.916e-44
Identity = 56/102 (54.90%), Postives = 65/102 (63.73%), Query Frame = 2

Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSW-DPGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEG LDYLGNP+L   ++    W       GA  G+RI G P+ E   PL     FDPLGL
Sbjct:   62 VIHSRWAMLGALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGL 162

[Close]

BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 8.325e-44
Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 1

Query:  343 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   58 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVI 109

HSP 2 Score: 96.6709 bits (239), Expect = 8.325e-44
Identity = 56/102 (54.90%), Postives = 65/102 (63.73%), Query Frame = 2

Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSWD-PGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAGAQIFSEG LDYLGNP+L   ++    W       GA  G+RI G P+ E   P+     FDPLGL
Sbjct:  108 VIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGL 208

[Close]

BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.328e-44
Identity = 46/58 (79.31%), Postives = 48/58 (82.76%), Query Frame = 1

Query:  325 VQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            V     WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTA LSADPE FA+NR LEVI
Sbjct:   45 VSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVI 102

HSP 2 Score: 95.5153 bits (236), Expect = 8.328e-44
Identity = 55/102 (53.92%), Postives = 65/102 (63.73%), Query Frame = 2

Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSWD-PGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEG LDYLGNP+L   ++    W       GA  G+R+ G P+ E   PL     FDPLGL
Sbjct:  101 VIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGL 201

[Close]

BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.085e-43
Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 1

Query:  343 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   62 WYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 113

HSP 2 Score: 95.1301 bits (235), Expect = 1.085e-43
Identity = 54/102 (52.94%), Postives = 64/102 (62.75%), Query Frame = 2

Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSWD-PGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAGAQIFSEG LDYLG+P L   ++    W       GA  G+R+ G P+ E   P+     FDPLGL
Sbjct:  112 VIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGL 212

[Close]

BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.085e-43
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 1

Query:  325 VQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            V  +  WYGP+RVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   45 VSSSSPWYGPNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 102

HSP 2 Score: 93.2041 bits (230), Expect = 1.085e-43
Identity = 53/102 (51.96%), Postives = 64/102 (62.75%), Query Frame = 2

Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSWD-PGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+L +   V F E VWFK G+QIFS+G LDYLGNP+L   ++    W       GA  G+R+ G P+ E   PL     FDPLGL
Sbjct:  101 VIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGL 201

[Close]

BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.085e-43
Identity = 47/53 (88.68%), Postives = 48/53 (90.57%), Query Frame = 1

Query:  340 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            +WYG DR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVI
Sbjct:   48 IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVI 100

HSP 2 Score: 93.2041 bits (230), Expect = 1.085e-43
Identity = 53/102 (51.96%), Postives = 62/102 (60.78%), Query Frame = 2

Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSW-DPGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+L K   V F E VWFKAG+QIFSEG LDYLGNP L   ++    W       G   G+R+ G P+ E    +     FDPLGL
Sbjct:   99 VIHCRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGL 199

[Close]

BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.413e-43
Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 1

Query:  343 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   62 WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 113

HSP 2 Score: 95.1301 bits (235), Expect = 1.413e-43
Identity = 54/102 (52.94%), Postives = 64/102 (62.75%), Query Frame = 2

Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSWD-PGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAGAQIFSEG LDYLG+P L   ++    W       GA  G+R+ G P+ E   P+     FDPLGL
Sbjct:  112 VIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGL 212

[Close]

BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.414e-43
Identity = 57/102 (55.88%), Postives = 66/102 (64.71%), Query Frame = 2

Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSWD-PGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+TPE+L K   V F E VWFKAGAQIFSEG LDYLGNP+L   ++    W       GA  G+R+ G P+ E   P+     FDPLGL
Sbjct:  102 VIHARWAMLGALGCLTPELLAK-SGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGL 202

HSP 2 Score: 97.0561 bits (240), Expect = 1.414e-43
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 1

Query:  340 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            +WYG DR K+LGPFS +TPSYL GEF GDYGWDTAGLS+DPE FARNR LEVI
Sbjct:   51 IWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVI 103

The following BLAST results are available for this feature:

BLAST of EY720100 vs. ExPASy Swiss-Prot

BLAST of EY720100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59


Match Name	E-value	Identity	Description
CB24_PETSP	3.763e-44	81.03	Chlorophyll a-b binding protein 25, chloroplastic ...	[more]
CB21_GOSHI	4.905e-44	86.79	Chlorophyll a-b binding protein 151, chloroplastic...	[more]
CB21_PEA	4.916e-44	84.62	Chlorophyll a-b binding protein AB96 (Fragment) OS...	[more]
CB2B_PINSY	8.325e-44	86.54	Chlorophyll a-b binding protein type 2 member 1B, ...	[more]
CB25_PETSP	8.328e-44	79.31	Chlorophyll a-b binding protein 91R, chloroplastic...	[more]
CB2A_PYRPY	1.085e-43	86.54	Chlorophyll a-b binding protein 1A, chloroplastic ...	[more]
CB23_NICPL	1.085e-43	79.31	Chlorophyll a-b binding protein C, chloroplastic O...	[more]
CB23_TOBAC	1.085e-43	88.68	Chlorophyll a-b binding protein 36, chloroplastic ...	[more]
CB2A_PINSY	1.413e-43	86.54	Chlorophyll a-b binding protein type 2 member 1A, ...	[more]
CB2_PHYPA	1.414e-43	55.88	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-703-002-A07-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY720100 ID=EY720100; Name=EY720100; organism=Citrus sinensis; type=EST; length=895bp
CACCCACGCGTCCGATCTCTCTTTCTGTATTGTCTTCAGACACATATTAA
CATCACAGTTCCAACCGACACAACATCCATAATAACAACTCTCAGGACAA
TGGCATCAATAATGGCGGCTGCTACTGCTAGCTCTAGCACTTCTCTTAGG
GCAACCCCATTTCTTGGCCAGAGTAGGACAACTGCTAACGCTCTAAAAGA
TGTTGTTCCGATGGGGAATGCCAAGTACACAATGGTAATAAGTTGGTAAC
CTTAACCTACACCTTCAGCCTTTTTGTCTCTCTTTGTCTCTGTGTTTAGG
GAAATTCATTGAAGATATTGTTGTGTTCAGGGAAATGAACTGTGGTATGG
GCCAGACAGGGTGAAGTACTTGGGACCCTTTTCAGCACAGACTCCATCAT
ACTTGACTGGAGAGTTTCCAGGTGACTATGGATGGGACACTGCTGGTTTG
TCTGCTGATCCCGAGGCCTTTGCCAGGAACAGGGCTCTTGAGGTGATATT
CTTTCCTTCTTATTCTTGCCCTCTGTCGGCTGGTAATGTGGTTACAGCAA
CAAAGATATTGATACTACTATTTCAATTTGTAGGTGATCCATGGCAGGTG
GGCTATGCTTGGAGCACTAGGCTGCATCACCCCTGAAGTTCTCGAGAAAT
GGCTTAAAGTAGACTTCAAGGAACCGGTTTGGTTCAAAGCTGGAGCTCAG
ATTTTCTCAGAAGGGTGGCTTGACTACTTGGGAAACCCAACCTTGTTCAT
GCTCAAAGCATTCTGGCTGTCCTGGGATCCAGGTNGTCCTCATGGGGCTC
GTTGAGGGTTCCGTATCAATGGCCTCCCTGTGTCCGAAAAGGAACAACCT
CTACCCGGTTGCCANTATTTTGATCCCCTGGGCCTGCTGATAACC