EY720100

Overview
NameEY720100
Unique NameEY720100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 9.024e-43
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 1
Query:  343 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            WYG DRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVI
Sbjct:   50 WYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVI 101          

HSP 2 Score: 90.8929 bits (224), Expect = 9.024e-43
Identity = 54/103 (52.43%), Postives = 65/103 (63.11%), Query Frame = 2
Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSW-DPGXPHGAR*GFRINGL-PVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFS+G LDYLGNP+L   ++    W       GA  G+R+ G  P+ E E  L     FDPLGL
Sbjct:  100 VIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGL 201          
BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 9.025e-43
Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 1
Query:  343 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            WYG DRV YLGP S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   49 WYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 100          

HSP 2 Score: 97.8265 bits (242), Expect = 9.025e-43
Identity = 56/102 (54.90%), Postives = 65/102 (63.73%), Query Frame = 2
Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSWDPGXP-HGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEG LDYLGNP+L   ++    W       GA  G+RI G P+ E   PL     FDPLGL
Sbjct:   99 VIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGL 199          
BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 9.027e-43
Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 1
Query:  343 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            WYG DRV YLGP S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   45 WYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 96          

HSP 2 Score: 97.8265 bits (242), Expect = 9.027e-43
Identity = 56/102 (54.90%), Postives = 65/102 (63.73%), Query Frame = 2
Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSWDPGXP-HGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEG LDYLGNP+L   ++    W       GA  G+RI G P+ E   PL     FDPLGL
Sbjct:   95 VIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGL 195          
BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.532e-42
Identity = 46/58 (79.31%), Postives = 48/58 (82.76%), Query Frame = 1
Query:  325 VQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            V     WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADP  FA+NR LEVI
Sbjct:   44 VSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVI 101          

HSP 2 Score: 90.5077 bits (223), Expect = 1.532e-42
Identity = 52/102 (50.98%), Postives = 62/102 (60.78%), Query Frame = 2
Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSWD-PGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RW MLGALGC+ PE+  +   V F E VWFKAG+QIF EG LDYLGNP+L   ++    W       GA  G+R+ G P+ E   PL     FDPLGL
Sbjct:  100 VIHCRWTMLGALGCVFPELFAR-NGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGL 200          
BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.532e-42
Identity = 46/52 (88.46%), Postives = 47/52 (90.38%), Query Frame = 1
Query:  343 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            WYG DRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVI
Sbjct:   49 WYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVI 100          

HSP 2 Score: 90.8929 bits (224), Expect = 1.532e-42
Identity = 55/103 (53.40%), Postives = 65/103 (63.11%), Query Frame = 2
Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSW-DPGXPHGAR*GFRINGL-PVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEG LDYLGNP+L   ++    W       GA  G+R+ G  P+ E E  L     FDPLGL
Sbjct:   99 VIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSFDPLGL 200          
BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.659e-41
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 1
Query:  340 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            +WYGPDR KYLGPFS  TPSYLTGEFPGDYGWDTA +SADPE FA+NR LEVI
Sbjct:   49 IWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVI 101          

HSP 2 Score: 90.1225 bits (222), Expect = 1.659e-41
Identity = 53/102 (51.96%), Postives = 61/102 (59.80%), Query Frame = 2
Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSWD-PGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+L K   + F E VWFKAGAQIFSEG LDY GNP L   ++    W       G   G+R+ G  + E   PL     FDPLGL
Sbjct:  100 VIHCRWAMLGALGCVFPELLAK-NGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGL 200          
BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.671e-41
Identity = 44/58 (75.86%), Postives = 47/58 (81.03%), Query Frame = 1
Query:  325 VQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            V  +  WYG DRV YLGP S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:   44 VSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 101          

HSP 2 Score: 91.6633 bits (226), Expect = 3.671e-41
Identity = 54/102 (52.94%), Postives = 64/102 (62.75%), Query Frame = 2
Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSWD-PGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+L +   V F E  WFKAG+QIFS+G LDYLGNP+L   ++    W       GA  G+RI G P+ E   PL     FDPLGL
Sbjct:  100 VIHCRWAMLGALGCVFPELLAR-NGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGL 200          
BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.653e-38
Identity = 58/107 (54.21%), Postives = 64/107 (59.81%), Query Frame = 2
Query:  569 YFNL*VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLK-AFWLSWDPGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            Y  L +IH RWAMLGALGC TPE+L K     F E VWFKAGAQIFSEG LDYLGNP+L   +     S       G   G+R+NG P  E   PL     FDPLGL
Sbjct:   82 YRELELIHARWAMLGALGCQTPELLAK-SGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGL 187          

HSP 2 Score: 85.8853 bits (211), Expect = 4.653e-38
Identity = 39/53 (73.58%), Postives = 45/53 (84.91%), Query Frame = 1
Query:  343 WYGPDRVKYLGPFSAQ-TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            +YGP+R K+LGP+S   TP+YLTGEFPGDYGWDTAGLSADPE F R R LE+I
Sbjct:   36 FYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELI 88          
BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.894e-36
Identity = 54/102 (52.94%), Postives = 64/102 (62.75%), Query Frame = 2
Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSWD-PGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH  WAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEG LDYLGNP+L   ++    W       GA  G+RI G P+ E   P+     FDPLGL
Sbjct:   40 VIHSTWAMLGALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGL 140          

HSP 2 Score: 79.7221 bits (195), Expect = 1.894e-36
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 1
Query:  376 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            PFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct:    1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 41          
BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.201e-36
Identity = 55/102 (53.92%), Postives = 65/102 (63.73%), Query Frame = 2
Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSW-DPGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEG LDYLGNP+L   ++    W       GA  G+RI G P+ E   P+     FDPLGL
Sbjct:   90 VIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGL 190          

HSP 2 Score: 76.2554 bits (186), Expect = 3.201e-36
Identity = 38/58 (65.52%), Postives = 40/58 (68.97%), Query Frame = 1
Query:  325 VQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            V     WYGPDRVKYLGPFS + PSYLTGEF         GLSADPE FA+NR LEVI
Sbjct:   42 VSSGSPWYGPDRVKYLGPFSGEAPSYLTGEF--------HGLSADPETFAKNRELEVI 91          
The following BLAST results are available for this feature:
BLAST of EY720100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CB21_ARATH9.024e-4388.46Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB21_ORYSJ9.025e-4382.69Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB22_ORYSJ9.027e-4382.69Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_PETSP1.532e-4279.31Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB21_SINAL1.532e-4288.46Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_PINTH1.659e-4183.02Chlorophyll a-b binding protein type I, chloroplas... [more]
CB21_WHEAT3.671e-4175.86Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2_CHLRE4.653e-3854.21Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_CUCSA1.894e-3652.94Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB22_SOYBN3.201e-3653.92Chlorophyll a-b binding protein 2, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-002-A07-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720100 ID=EY720100; Name=EY720100; organism=Citrus sinensis; type=EST; length=895bp
CACCCACGCGTCCGATCTCTCTTTCTGTATTGTCTTCAGACACATATTAA
CATCACAGTTCCAACCGACACAACATCCATAATAACAACTCTCAGGACAA
TGGCATCAATAATGGCGGCTGCTACTGCTAGCTCTAGCACTTCTCTTAGG
GCAACCCCATTTCTTGGCCAGAGTAGGACAACTGCTAACGCTCTAAAAGA
TGTTGTTCCGATGGGGAATGCCAAGTACACAATGGTAATAAGTTGGTAAC
CTTAACCTACACCTTCAGCCTTTTTGTCTCTCTTTGTCTCTGTGTTTAGG
GAAATTCATTGAAGATATTGTTGTGTTCAGGGAAATGAACTGTGGTATGG
GCCAGACAGGGTGAAGTACTTGGGACCCTTTTCAGCACAGACTCCATCAT
ACTTGACTGGAGAGTTTCCAGGTGACTATGGATGGGACACTGCTGGTTTG
TCTGCTGATCCCGAGGCCTTTGCCAGGAACAGGGCTCTTGAGGTGATATT
CTTTCCTTCTTATTCTTGCCCTCTGTCGGCTGGTAATGTGGTTACAGCAA
CAAAGATATTGATACTACTATTTCAATTTGTAGGTGATCCATGGCAGGTG
GGCTATGCTTGGAGCACTAGGCTGCATCACCCCTGAAGTTCTCGAGAAAT
GGCTTAAAGTAGACTTCAAGGAACCGGTTTGGTTCAAAGCTGGAGCTCAG
ATTTTCTCAGAAGGGTGGCTTGACTACTTGGGAAACCCAACCTTGTTCAT
GCTCAAAGCATTCTGGCTGTCCTGGGATCCAGGTNGTCCTCATGGGGCTC
GTTGAGGGTTCCGTATCAATGGCCTCCCTGTGTCCGAAAAGGAACAACCT
CTACCCGGTTGCCANTATTTTGATCCCCTGGGCCTGCTGATAACC
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