EY720100

Overview
NameEY720100
Unique NameEY720100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.503e-35
Identity = 40/53 (75.47%), Postives = 45/53 (84.91%), Query Frame = 1
Query:  343 WYGPDRVKYLGPFSAQ-TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            +YGPDR K+LGPFS   TP YLTGEFPGDYGWDTAGLSADP+ FAR R +E+I
Sbjct:   33 FYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELI 85          

HSP 2 Score: 80.8777 bits (198), Expect = 4.503e-35
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = 2
Query:  569 YFNL*VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTL 745
            Y  + +IH RWA+LGALG +TPE+L ++  V F EPVWFKAGAQIF++G L+YLGN +L
Sbjct:   79 YREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESL 137          
BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 9.944e-35
Identity = 42/52 (80.77%), Postives = 43/52 (82.69%), Query Frame = 1
Query:  343 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            WYG DRV YLGP S   PSYLTGEFPGDYGWDT GLSADPE FA+NR LEVI
Sbjct:   48 WYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVI 99          

HSP 2 Score: 73.559 bits (179), Expect = 9.944e-35
Identity = 46/102 (45.10%), Postives = 58/102 (56.86%), Query Frame = 2
Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSWD-PGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWA+   LGC+ PE+L +   V F E VWFKAG+QIFSEG L + GNP+L   ++    W       GA  G+ + G  + E   PL     FDPLGL
Sbjct:   98 VIHCRWAIAVGLGCVFPELLAR-NGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDPLYLGGSFDPLGL 198          
BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.487e-27
Identity = 90/207 (43.48%), Postives = 102/207 (49.28%), Query Frame = 1
Query:  154 TPFL-GQSRT-TANALKDVVPMGNAKYTMVISW*P*PTPSAFLSLFVSVFREIH*RYCCVQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIFFPSYSCPLSAGNVVTATKILILLFQFVGDPWQVGYAWSTRLHHP*SSREMA*SRLQGTGLVQSWSSDFLRRVA*LLGKPNLVHAQSILA 768
            TPFL GQ R  +A+ L+D+    N + TM                                GN+LWYGPDRVKYLGPFSAQTPSYL GEFPGDYGWDTAGLSADPEAFARNRALEVI        L A         L  +F  V   W VG  +   +               G+ +      D+       LG PNLVHAQSILA
Sbjct:   17 TPFLSGQGRAASASPLRDIAAATNGRITM--------------------------------GNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIH--GRWAMLGA---------LGCVFPEVLQKW-VGVEFKEPVWFK-----------AGSQIFSEGGLDY-------LGNPNLVHAQSILA 161          

HSP 2 Score: 119.398 bits (298), Expect = 2.805e-26
Identity = 64/103 (62.14%), Postives = 72/103 (69.90%), Query Frame = 2
Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFW-LSWDPGXPHGAR*GFRINGLP-VSEKEQPLPGCXYFDPLGL 886
            VIHGRWAMLGALGC+ PEVL+KW+ V+FKEPVWFKAG+QIFSEG LDYLGNP L   ++   +        G   GFRINGL  V E     PG  YFDPLGL
Sbjct:  100 VIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGL 202          
BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.498e-25
Identity = 46/108 (42.59%), Postives = 60/108 (55.56%), Query Frame = 2
Query:  569 YFNL*VIHGRWAMLGALGCITPEVLEKWLKVDFKEP-VWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSWDPGXP-HGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            Y  L +IH R  +LGALG +TPE+L     + F +  +WFKAGA IF +G L+YLGNP+L   +    +        G   G+R+NG P  E   PL     FDPLGL
Sbjct:  101 YRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGL 208          

HSP 2 Score: 63.5438 bits (153), Expect = 2.498e-25
Identity = 32/52 (61.54%), Postives = 34/52 (65.38%), Query Frame = 1
Query:  343 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            +YGPD          Q P   TGEFPGDYGWDTAGLSADPE F R R LE+I
Sbjct:   57 FYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELI 107          
BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 6.467e-23
Identity = 68/143 (47.55%), Postives = 75/143 (52.45%), Query Frame = 1
Query:  340 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIFFPSYSCPLSAGNVVTATKILILLFQFVGDPWQVGYAWSTRLHHP*SSREMA*SRLQGTGLVQSWSSDFLRRVA*LLGKPNLVHAQSILA 768
            +WYGPDR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI        L A   V    +     +F    W                         G+ + Q    D+       LG PNLVHAQSILA
Sbjct:   47 IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH--CRWAMLGALGCVFPELLAKNGVKFGEAVWFKA----------------------GSQIFQEGGLDY-------LGNPNLVHAQSILA 158          

HSP 2 Score: 92.0485 bits (227), Expect = 4.796e-18
Identity = 54/102 (52.94%), Postives = 62/102 (60.78%), Query Frame = 2
Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSWD-PGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+ PE+L K   V F E VWFKAG+QIF EG LDYLGNP L   ++    W       GA  G+R+ G P+ E    L     FDPLGL
Sbjct:   98 VIHCRWAMLGALGCVFPELLAK-NGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYRVGGGPLGEGLDQLYPGGAFDPLGL 198          
BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.220e-21
Identity = 66/143 (46.15%), Postives = 73/143 (51.05%), Query Frame = 1
Query:  340 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIFFPSYSCPLSAGNVVTATKILILLFQFVGDPWQVGYAWSTRLHHP*SSREMA*SRLQGTGLVQSWSSDFLRRVA*LLGKPNLVHAQSILA 768
            +WYG DR K+LGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI   S    L A   +    +     QF    W                         G  +      D+       LG PNLVHAQSILA
Sbjct:   47 IWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH--SRWAMLGALGCIFPELLSKNGVQFGEAVWFKA----------------------GAQIFSEGGLDY-------LGNPNLVHAQSILA 158          

HSP 2 Score: 98.9821 bits (245), Expect = 3.923e-20
Identity = 57/102 (55.88%), Postives = 63/102 (61.76%), Query Frame = 2
Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSWDPGXP-HGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGCI PE+L K   V F E VWFKAGAQIFSEG LDYLGNP L   ++    W       G   G+R+ G P+ E   PL     FDPLGL
Sbjct:   98 VIHSRWAMLGALGCIFPELLSK-NGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGL 198          
BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.905e-21
Identity = 56/102 (54.90%), Postives = 67/102 (65.69%), Query Frame = 2
Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSWD-PGXPHGAR*GFRINGLPVSEKEQPLPGCXYFDPLGL 886
            VIH RWAMLGALGC+TPE+L K   V F E VWFKAG+QIF+EG LDYLGNP+L   ++    W       GA  G+R+ G P+ E E P+     FDPLGL
Sbjct:   99 VIHSRWAMLGALGCVTPELLAK-NGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGL 199          

HSP 2 Score: 97.4413 bits (241), Expect = 1.141e-19
Identity = 63/143 (44.06%), Postives = 71/143 (49.65%), Query Frame = 1
Query:  340 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIFFPSYSCPLSAGNVVTATKILILLFQFVGDPWQVGYAWSTRLHHP*SSREMA*SRLQGTGLVQSWSSDFLRRVA*LLGKPNLVHAQSILA 768
            +WYG DR  YLGPFS   PSYL+GEFPGDYGWDTAGLSADPE FA+NR LEVI   S    L A   VT   +     +F    W                              ++ S  F       LG P+LVHAQSILA
Sbjct:   48 IWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIH--SRWAMLGALGCVTPELLAKNGVKFGEAVW-----------------------------FKAGSQIFAEGGLDYLGNPSLVHAQSILA 159          
BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.663e-19
Identity = 61/137 (44.53%), Postives = 72/137 (52.55%), Query Frame = 1
Query:  358 RVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIFFPSYSCPLSAGNVVTATKILILLFQFVGDPWQVGYAWSTRLHHP*SSREMA*SRLQGTGLVQSWSSDFLRRVA*LLGKPNLVHAQSILA 768
            RVKYLGPFS + PSYLTGEFPGDYGWDTAGLSA PE FA+NR LEVI      C +SA       ++L ++ Q  G+       W                   G  +      D+       LG P+LVHAQSILA
Sbjct:   58 RVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVI---HSRCAMSAALGCIFPELLSVMGQGFGEA-----VWFK----------------AGAQIFSEGGLDY-------LGNPSLVHAQSILA 163          

HSP 2 Score: 81.6481 bits (200), Expect = 6.482e-15
Identity = 54/103 (52.43%), Postives = 61/103 (59.22%), Query Frame = 2
Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLGNPTLFMLKAFWLSWDPG-XPHGAR*GFRINGLPVSEKEQPL-PGCXYFDPLGL 886
            VIH R AM  ALGCI PE+L   +   F E VWFKAGAQIFSEG LDYLGNP+L   ++    W       GA  G+RI   P+ E   PL PG   FD LGL
Sbjct:  103 VIHSRCAMSAALGCIFPELLSV-MGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYPGS--FDSLGL 202          
BLAST of EY720100 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 9.748e-16
Identity = 26/55 (47.27%), Postives = 33/55 (60.00%), Query Frame = 1
Query:  343 WYGPDRVKYLGPF---SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 498
            WYGPDR  +L       ++ P YL GE  GDYG+D  GL   PE FA+ +A E+I
Sbjct:   62 WYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELI 116          

HSP 2 Score: 52.373 bits (124), Expect = 9.748e-16
Identity = 42/107 (39.25%), Postives = 50/107 (46.73%), Query Frame = 2
Query:  584 VIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGWLDYLG-----NPTLFMLKAFWLSWDPGXPHGAR*GFRI-NGLPVSEKEQPLPGCXYFDPLGL 886
            +IH RWAMLGA G I PE L K+      E VWFK GA +     L+Y G     N  L ++    L        G    +RI NGL   +K  P      FDPLGL
Sbjct:  115 LIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLL-------GGAEYYRITNGLDFEDKLHP---GGPFDPLGL 211          
The following BLAST results are available for this feature:
BLAST of EY720100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CB2_DUNTE4.503e-3575.47Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB48_MAIZE9.944e-3580.77Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB23_HORVU1.487e-2743.48Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_DUNSA2.498e-2542.59Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_SILPR6.467e-2347.55Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_LEMGI1.220e-2146.15Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_POLMU7.905e-2154.90Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB2_MALDO9.663e-1944.53Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB26_ARATH9.748e-1647.27Chlorophyll a-b binding protein CP26, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-002-A07-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720100 ID=EY720100; Name=EY720100; organism=Citrus sinensis; type=EST; length=895bp
CACCCACGCGTCCGATCTCTCTTTCTGTATTGTCTTCAGACACATATTAA
CATCACAGTTCCAACCGACACAACATCCATAATAACAACTCTCAGGACAA
TGGCATCAATAATGGCGGCTGCTACTGCTAGCTCTAGCACTTCTCTTAGG
GCAACCCCATTTCTTGGCCAGAGTAGGACAACTGCTAACGCTCTAAAAGA
TGTTGTTCCGATGGGGAATGCCAAGTACACAATGGTAATAAGTTGGTAAC
CTTAACCTACACCTTCAGCCTTTTTGTCTCTCTTTGTCTCTGTGTTTAGG
GAAATTCATTGAAGATATTGTTGTGTTCAGGGAAATGAACTGTGGTATGG
GCCAGACAGGGTGAAGTACTTGGGACCCTTTTCAGCACAGACTCCATCAT
ACTTGACTGGAGAGTTTCCAGGTGACTATGGATGGGACACTGCTGGTTTG
TCTGCTGATCCCGAGGCCTTTGCCAGGAACAGGGCTCTTGAGGTGATATT
CTTTCCTTCTTATTCTTGCCCTCTGTCGGCTGGTAATGTGGTTACAGCAA
CAAAGATATTGATACTACTATTTCAATTTGTAGGTGATCCATGGCAGGTG
GGCTATGCTTGGAGCACTAGGCTGCATCACCCCTGAAGTTCTCGAGAAAT
GGCTTAAAGTAGACTTCAAGGAACCGGTTTGGTTCAAAGCTGGAGCTCAG
ATTTTCTCAGAAGGGTGGCTTGACTACTTGGGAAACCCAACCTTGTTCAT
GCTCAAAGCATTCTGGCTGTCCTGGGATCCAGGTNGTCCTCATGGGGCTC
GTTGAGGGTTCCGTATCAATGGCCTCCCTGTGTCCGAAAAGGAACAACCT
CTACCCGGTTGCCANTATTTTGATCCCCTGGGCCTGCTGATAACC
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