CX300743

Overview
NameCX300743
Unique NameCX300743
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACT_MANSE (Actin, muscle OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.546e-36
Identity = 85/205 (41.46%), Postives = 127/205 (61.95%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD-------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N PAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF T+AE +I  D+ +KL  +A D       A+ + S  K SYELPDG++++I NER++ PEALF+PS +G       G+ + V  ++ +   +   R D+  N ++SG  T+YPG A+R+++E+ AL
Sbjct:  124 MFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG-YSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEK-SYELPDGQVITIGNERFRCPEALFQPSFLGM---ESCGIHETVYNSIMKCDVD--IRKDLYANTVMSGGTTMYPGIADRMQKEITAL 321          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACT_CRAVI (Actin (Fragment) OS=Crassostrea virginica PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.546e-36
Identity = 82/204 (40.20%), Postives = 127/204 (62.25%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N PAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF T+AE +I  D+ +KL  +A D       + + S  + SYELPDG++++I NER++ PEA+F+PS +G      +G+ +   Q++ +   +   R D+  NI++SG  T++PG A+R+++EV  L
Sbjct:   40 MFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERG-YSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGM---ESAGIHETSYQSIMKCDVD--IRKDLYANIVLSGGTTMFPGIADRMQKEVTTL 237          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTM_STYPL (Actin, muscle OS=Styela plicata PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.546e-36
Identity = 83/204 (40.69%), Postives = 126/204 (61.76%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+NVPAM++ +  +L+ YASG  TG+ +  GDGV     I  GYALP+ I R D  GRDL  Y +  + +RG  SF+T+AE +I  D+ +KL  +A D       + + S  + SYELPDG++++I NER++ PE LF+PS +G      SGV +    ++ +   +   R D+  N ++SG  T+YPG A+R+++E+ AL
Sbjct:  127 MFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERG-YSFVTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGM---ESSGVHETTYNSIMKC--DIDIRKDLYANNVLSGGTTMYPGIADRMQKEITAL 324          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTC_BIOPF (Actin, cytoplasmic OS=Biomphalaria pfeifferi PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.546e-36
Identity = 81/204 (39.71%), Postives = 126/204 (61.76%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N PAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF T+AE +I  D+ +KL  +A D       + T S  + SYELPDG++++I NER++ PEA+F+PS +G      +G+ +    ++ +   +   R D+  N ++SG  T++PG A+R+++E+ AL
Sbjct:  124 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERG-YSFTTTAEREIVRDIKEKLCYVALDFEQEMHTAATSSSLEKSYELPDGQVITIGNERFRCPEAVFQPSFLGM---ESAGIHETTYNSIMKCDVD--IRKDLYANTVLSGGSTMFPGIADRMQKEITAL 321          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTC_BIOOB (Actin, cytoplasmic OS=Biomphalaria obstructa PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.546e-36
Identity = 81/204 (39.71%), Postives = 126/204 (61.76%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N PAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF T+AE +I  D+ +KL  +A D       + + S  + SYELPDG++++I NER++ PEALF+PS +G      +G+ +    ++ +   +   R D+  N ++SG  T++PG A+R+++E+ AL
Sbjct:  124 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERG-YSFTTTAEREIVRDIKEKLCYVALDFEQEMQTATSSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGM---EAAGIHETTYNSIMKCDVD--IRKDLYANTVLSGGSTMFPGIADRMQKEITAL 321          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTB_XENTR (Actin, cytoplasmic 1 OS=Xenopus tropicalis GN=actb PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.546e-36
Identity = 82/204 (40.20%), Postives = 125/204 (61.27%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N PAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF T+AE +I  D+ +KL  +A D       + + S  + SYELPDG++++I NER++ PEALF+PS +G       G+ +    ++ +   +   R D+  N ++SG  T+YPG A+R+++E+ AL
Sbjct:  123 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG-YSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGM---ESCGIHETTYNSIMKCDVD--IRKDLYANTVLSGGTTMYPGIADRMQKEITAL 320          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTB_XENLA (Actin, cytoplasmic 1 OS=Xenopus laevis GN=actb PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.546e-36
Identity = 82/204 (40.20%), Postives = 125/204 (61.27%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N PAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF T+AE +I  D+ +KL  +A D       + + S  + SYELPDG++++I NER++ PEALF+PS +G       G+ +    ++ +   +   R D+  N ++SG  T+YPG A+R+++E+ AL
Sbjct:  123 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG-YSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGM---ESCGIHETTYNSIMKCDVD--IRKDLYANTVLSGGTTMYPGIADRMQKEITAL 320          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTB_OREMO (Actin, cytoplasmic 1 OS=Oreochromis mossambicus GN=actb PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.546e-36
Identity = 82/204 (40.20%), Postives = 125/204 (61.27%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N PAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF T+AE +I  D+ +KL  +A D       + + S  + SYELPDG++++I NER++ PEALF+PS +G       G+ +    ++ +   +   R D+  N ++SG  T+YPG A+R+++E+ AL
Sbjct:  123 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG-YSFTTTAEREIVRDIKEKLCYVALDFEQEMGTAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGM---ESCGIHETTYNSIMKCDVD--IRKDLYANTVLSGGTTMYPGIADRMQKEITAL 320          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTB_CERPY (Actin, cytoplasmic 1 OS=Cercopithecus pygerythrus GN=ACTB PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.546e-36
Identity = 83/205 (40.49%), Postives = 124/205 (60.49%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEED-GARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N PAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +R   SF T+AE +I  D+ +KL  +A D       + + S  + SYELPDG++++I NER++ PEALF+PS +G     I       + T + + + D   R D+  N ++SG  T+YPG A+R+++E+ AL
Sbjct:  108 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERYGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIH------ETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL 306          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTB1_TAKRU (Actin, cytoplasmic 1 OS=Takifugu rubripes GN=actba PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.546e-36
Identity = 82/204 (40.20%), Postives = 125/204 (61.27%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N PAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF T+AE +I  D+ +KL  +A D       + + S  + SYELPDG++++I NER++ PEALF+PS +G       G+ +    ++ +   +   R D+  N ++SG  T+YPG A+R+++E+ AL
Sbjct:  123 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG-YSFTTTAEREIVRDIKEKLCYVALDFEQEMGTAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGM---ESCGIHETTYNSIMKCDVD--IRKDLYANTVLSGGTTMYPGIADRMQKEITAL 320          
The following BLAST results are available for this feature:
BLAST of CX300743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 420
Match NameE-valueIdentityDescription
ACT_MANSE5.546e-3641.46Actin, muscle OS=Manduca sexta PE=2 SV=1[more]
ACT_CRAVI5.546e-3640.20Actin (Fragment) OS=Crassostrea virginica PE=2 SV=... [more]
ACTM_STYPL5.546e-3640.69Actin, muscle OS=Styela plicata PE=3 SV=1[more]
ACTC_BIOPF5.546e-3639.71Actin, cytoplasmic OS=Biomphalaria pfeifferi PE=3 ... [more]
ACTC_BIOOB5.546e-3639.71Actin, cytoplasmic OS=Biomphalaria obstructa PE=3 ... [more]
ACTB_XENTR5.546e-3640.20Actin, cytoplasmic 1 OS=Xenopus tropicalis GN=actb... [more]
ACTB_XENLA5.546e-3640.20Actin, cytoplasmic 1 OS=Xenopus laevis GN=actb PE=... [more]
ACTB_OREMO5.546e-3640.20Actin, cytoplasmic 1 OS=Oreochromis mossambicus GN... [more]
ACTB_CERPY5.546e-3640.49Actin, cytoplasmic 1 OS=Cercopithecus pygerythrus ... [more]
ACTB1_TAKRU5.546e-3640.20Actin, cytoplasmic 1 OS=Takifugu rubripes GN=actba... [more]

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Properties
Property NameValue
Genbank descriptionC08001G05SK PhyRootSw1 Citrus sinensis cDNA clone C08001G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300743 ID=CX300743; Name=CX300743; organism=Citrus sinensis; type=EST; length=596bp
TGATGTTCGAAACGTATAACGTACCAGCAATGTTTATAGAAGTACCGAAT
ATCCTAAATCAATACGCGTCAGGCACCAAAACTGGATTGACGGTGTGTTG
TGGTGATGGCGTGATGGTGACGCAAGCGATCAGCAACGGTTATGCGTTGC
CTAATACTATTTCGCGCAGCGATTTCGGTGGTCGGGATCTGAATCAGTAT
TTTATATCGACGATGTACCAACGCGGCGAGCGATCGTTTCTCACGTCTGC
CGAGTTTCAGATCGCTGGCGATGTCATTCAAAAATTGGGTTTGATCGCTC
CCGATGCTTCTTTAACGCATTCTTGTGGCAAACTAAGCTACGAGCTACCT
GATGGCGAGATACTATCGATACAGAACGAAAGATATCAAATACCTGAAGC
TTTATTCAGACCTTCGTTGATGGGATCGAGCTACGATTCGATTTCGGGCG
TCGCCGATCTCGTACAGCAGACCTTGTCACGTGTTCCTGAAGAGGACGGC
GCACGTGCTGATGTAGCGAAGAATATCATCGTATCGGGTGCGCCTACATT
ATATCCAGGTTTCGCAGAGCGTTTAGAACAAGAAGTCAAAGCATTG
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