CX300743

Overview
NameCX300743
Unique NameCX300743
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTZ_NEUCR (Actin-like protein OS=Neurospora crassa GN=ro-4 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.336e-26
Identity = 73/207 (35.27%), Postives = 115/207 (55.56%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD--------ASLTHSCGKLS-YELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            +FET+NVPA++  +  +L+ YASG  TG+ +  GDGV     +  G+ +PN+I R D  GRD+ +Y + T+ ++    F TSAE ++   + + +  +A D        A+      K++ Y LPDG  L I  ER++ PE LF P ++G  Y    GV  +V  +++R   +   R D+  NI++SG  TL  GF +RL  EV+ L
Sbjct:  126 LFETFNVPALYTSIQAVLSLYASGRTTGVVLDSGDGVSHAVPVYQGFTVPNSIRRIDVAGRDVTEY-LQTLLRKSGYVFHTSAEKEVVRLIKESVTYVAHDPRKEEKEWAAAKMDPAKIAEYVLPDGNKLKIGAERFRAPEILFDPEIIGLEY---PGVHQIVVDSINRTDLD--LRRDLYSNIVLSGGSTLTKGFGDRLLTEVQKL 326          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ARP2A_XENLA (Actin-related protein 2-A OS=Xenopus laevis GN=actr2-A PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.984e-26
Identity = 71/204 (34.80%), Postives = 113/204 (55.39%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIA------PDASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFETY    +++ +  +L  YA G  TG+ V  GDGV     +  G++LP+   R D  GRD+ +Y I  +  RG  +F  SA+F+    + +KL  +          +L  +    SY LPDG ++ +  ER++ PEALF+P L+  + + + GVA+L+  T+     +   RA+  K+I++SG  T+YPG   RLE+E+K L
Sbjct:  127 MFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRDITRYLIKLLLLRG-YAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTVLVESYTLPDGRVIKVGGERFEAPEALFQPHLI--NVEGV-GVAELLFNTIQAA--DIDTRAEFYKHIVLSGGSTMYPGLPSRLERELKQL 324          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ARP2_RAT (Actin-related protein 2 OS=Rattus norvegicus GN=Actr2 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.796e-26
Identity = 71/204 (34.80%), Postives = 113/204 (55.39%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIA------PDASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFETY    +++ +  +L  YA G  TG+ V  GDGV     +  G++LP+   R D  GRD+ +Y I  +  RG  +F  SA+F+    + +KL  +          +L  +    SY LPDG I+ +  ER++ PEALF+P L+  + + + GVA+L+  T+     +   R++  K+I++SG  T+YPG   RLE+E+K L
Sbjct:  127 MFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRDITRYLIKLLLLRG-YAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTVLVESYTLPDGRIIKVGGERFEAPEALFQPHLI--NVEGV-GVAELLFNTIQAA--DIDTRSEFYKHIVLSGGSTMYPGLPSRLERELKQL 324          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ARP2_MOUSE (Actin-related protein 2 OS=Mus musculus GN=Actr2 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.796e-26
Identity = 71/204 (34.80%), Postives = 113/204 (55.39%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIA------PDASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFETY    +++ +  +L  YA G  TG+ V  GDGV     +  G++LP+   R D  GRD+ +Y I  +  RG  +F  SA+F+    + +KL  +          +L  +    SY LPDG I+ +  ER++ PEALF+P L+  + + + GVA+L+  T+     +   R++  K+I++SG  T+YPG   RLE+E+K L
Sbjct:  127 MFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRDITRYLIKLLLLRG-YAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTVLVESYTLPDGRIIKVGGERFEAPEALFQPHLI--NVEGV-GVAELLFNTIQAA--DIDTRSEFYKHIVLSGGSTMYPGLPSRLERELKQL 324          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ARP2_HUMAN (Actin-related protein 2 OS=Homo sapiens GN=ACTR2 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.796e-26
Identity = 71/204 (34.80%), Postives = 113/204 (55.39%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIA------PDASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFETY    +++ +  +L  YA G  TG+ V  GDGV     +  G++LP+   R D  GRD+ +Y I  +  RG  +F  SA+F+    + +KL  +          +L  +    SY LPDG I+ +  ER++ PEALF+P L+  + + + GVA+L+  T+     +   R++  K+I++SG  T+YPG   RLE+E+K L
Sbjct:  127 MFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRDITRYLIKLLLLRG-YAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTVLVESYTLPDGRIIKVGGERFEAPEALFQPHLI--NVEGV-GVAELLFNTIQAA--DIDTRSEFYKHIVLSGGSTMYPGLPSRLERELKQL 324          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ARP2_CHICK (Actin-related protein 2 OS=Gallus gallus GN=ACTR2 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.796e-26
Identity = 71/204 (34.80%), Postives = 113/204 (55.39%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIA------PDASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFETY    +++ +  +L  YA G  TG+ V  GDGV     +  G++LP+   R D  GRD+ +Y I  +  RG  +F  SA+F+    + +KL  +          +L  +    SY LPDG I+ +  ER++ PEALF+P L+  + + + GVA+L+  T+     +   R++  K+I++SG  T+YPG   RLE+E+K L
Sbjct:  127 MFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRDITRYLIKLLLLRG-YAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTVLVESYTLPDGRIIKVGGERFEAPEALFQPHLI--NVEGV-GVAELLFNTIQAA--DIDTRSEFYKHIVLSGGSTMYPGLPSRLERELKQL 324          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ARP2_BOVIN (Actin-related protein 2 OS=Bos taurus GN=ACTR2 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.796e-26
Identity = 71/204 (34.80%), Postives = 113/204 (55.39%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIA------PDASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFETY    +++ +  +L  YA G  TG+ V  GDGV     +  G++LP+   R D  GRD+ +Y I  +  RG  +F  SA+F+    + +KL  +          +L  +    SY LPDG I+ +  ER++ PEALF+P L+  + + + GVA+L+  T+     +   R++  K+I++SG  T+YPG   RLE+E+K L
Sbjct:  127 MFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRDITRYLIKLLLLRG-YAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTVLVESYTLPDGRIIKVGGERFEAPEALFQPHLI--NVEGV-GVAELLFNTIQAA--DIDTRSEFYKHIVLSGGSTMYPGLPSRLERELKQL 324          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ARP2B_XENLA (Actin-related protein 2-B OS=Xenopus laevis GN=actr2-B PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.796e-26
Identity = 71/204 (34.80%), Postives = 113/204 (55.39%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIA------PDASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFETY    +++ +  +L  YA G  TG+ V  GDGV     +  G++LP+   R D  GRD+ +Y I  +  RG  +F  SA+F+    + +KL  +          +L  +    SY LPDG ++ +  ER++ PEALF+P L+  + + + GVA+L+  T+     +   RA+  K+I++SG  T+YPG   RLE+E+K L
Sbjct:  127 MFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRDITRYLIKLLLLRG-YAFNHSADFETVRMMKEKLCYVGYNIEQEQKLALETTVLVESYTLPDGRVIKVGGERFEAPEALFQPHLI--NVEGV-GVAELLFNTIQAA--DIDTRAEFYKHIVLSGGSTMYPGLPSRLERELKQL 324          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACT26_DICDI (Putative actin-26 OS=Dictyostelium discoideum GN=act26 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.796e-26
Identity = 68/202 (33.66%), Postives = 116/202 (57.43%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIA----PDASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFE +NVPA++I +  +L+ YASG   G+ +  GD V  T  I  GY L ++I R +F G DL +Y    + +RG  SF T++E +I   + +KL  +A     + S      + +Y+LPDG+I+ I NER++  EALF+PS++G   D   G+ + + +++     +   R  +  NI++SG  T+  G ++R+  +++ L
Sbjct:  123 MFEKFNVPALYIAIQAVLSLYASGRTCGIVLDSGDDVTHTVPIYGGYVLQHSIIRLNFAGSDLTEYMAKLLLERG-YSFTTTSEMEIVKSIKEKLAYVAINFNAEMSKPIDTLETTYQLPDGQIIIIGNERFRCAEALFQPSMIGLECD---GIHETIFKSIMMC--DIDIRKHMYANILLSGGNTMLSGISDRIYNQLREL 318          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACT_EUPCR (Actin, cytoplasmic OS=Euplotes crassus PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.159e-25
Identity = 77/205 (37.56%), Postives = 112/205 (54.63%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD--ASLTHS--CGKL--SYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEED-GARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFE Y+ P+M+I++  +L+ Y++G  TG+ V  GDGV     I  GY +P+ I +    GRDL  Y +  + +  +  F T+AE +   D+ +KL  +A D  A L  +   G+L  SY LPDG  L I  +R+Q PE LF+P L G    S+       Q T   +   D   R D+  NII+SG  T++PG  ERL +E+K L
Sbjct:  127 MFEEYDFPSMYIQIQAVLSLYSAGRTTGIVVDSGDGVTHVVPIFEGYQIPHAIEKILLAGRDLTDY-MCRILKDDDYHFETTAEKETVRDIKEKLCYVADDYEAELKKAGEGGELEESYALPDGRPLKISTQRFQCPEFLFQPDLGGRECKSVH------QLTYDSIMTCDLDVRKDLYANIILSGGTTMFPGLGERLYKEMKDL 324          
The following BLAST results are available for this feature:
BLAST of CX300743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 420
Match NameE-valueIdentityDescription
ACTZ_NEUCR2.336e-2635.27Actin-like protein OS=Neurospora crassa GN=ro-4 PE... [more]
ARP2A_XENLA3.984e-2634.80Actin-related protein 2-A OS=Xenopus laevis GN=act... [more]
ARP2_RAT6.796e-2634.80Actin-related protein 2 OS=Rattus norvegicus GN=Ac... [more]
ARP2_MOUSE6.796e-2634.80Actin-related protein 2 OS=Mus musculus GN=Actr2 P... [more]
ARP2_HUMAN6.796e-2634.80Actin-related protein 2 OS=Homo sapiens GN=ACTR2 P... [more]
ARP2_CHICK6.796e-2634.80Actin-related protein 2 OS=Gallus gallus GN=ACTR2 ... [more]
ARP2_BOVIN6.796e-2634.80Actin-related protein 2 OS=Bos taurus GN=ACTR2 PE=... [more]
ARP2B_XENLA6.796e-2634.80Actin-related protein 2-B OS=Xenopus laevis GN=act... [more]
ACT26_DICDI6.796e-2633.66Putative actin-26 OS=Dictyostelium discoideum GN=a... [more]
ACT_EUPCR1.159e-2537.56Actin, cytoplasmic OS=Euplotes crassus PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC08001G05SK PhyRootSw1 Citrus sinensis cDNA clone C08001G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300743 ID=CX300743; Name=CX300743; organism=Citrus sinensis; type=EST; length=596bp
TGATGTTCGAAACGTATAACGTACCAGCAATGTTTATAGAAGTACCGAAT
ATCCTAAATCAATACGCGTCAGGCACCAAAACTGGATTGACGGTGTGTTG
TGGTGATGGCGTGATGGTGACGCAAGCGATCAGCAACGGTTATGCGTTGC
CTAATACTATTTCGCGCAGCGATTTCGGTGGTCGGGATCTGAATCAGTAT
TTTATATCGACGATGTACCAACGCGGCGAGCGATCGTTTCTCACGTCTGC
CGAGTTTCAGATCGCTGGCGATGTCATTCAAAAATTGGGTTTGATCGCTC
CCGATGCTTCTTTAACGCATTCTTGTGGCAAACTAAGCTACGAGCTACCT
GATGGCGAGATACTATCGATACAGAACGAAAGATATCAAATACCTGAAGC
TTTATTCAGACCTTCGTTGATGGGATCGAGCTACGATTCGATTTCGGGCG
TCGCCGATCTCGTACAGCAGACCTTGTCACGTGTTCCTGAAGAGGACGGC
GCACGTGCTGATGTAGCGAAGAATATCATCGTATCGGGTGCGCCTACATT
ATATCCAGGTTTCGCAGAGCGTTTAGAACAAGAAGTCAAAGCATTG
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