CX300743

Overview
NameCX300743
Unique NameCX300743
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACL7B_BOVIN (Actin-like protein 7B OS=Bos taurus GN=ACTL7B PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.186e-24
Identity = 68/202 (33.66%), Postives = 110/202 (54.46%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIA----PDASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            +FET+ +PAM +   ++L+ Y+ G  +GL V  G GV     IS G  LP   SR+D+ G DL  Y +  + + G +   T     I   + +K    A     + SL     ++ YELPDG+++SI  ER+Q  E LF+P+L+GS+     G+ +L    L+R  +E G + ++A N+++ G  T+  GF ER ++E+  L
Sbjct:  169 LFETFGIPAMHVTSQSLLSIYSYGKTSGLVVESGHGVSHVVPISEGDVLPGLTSRADYAGGDLTNYLLQLLNEAGHK--FTDDHLHIIEHIKKKCCYSALKPEEELSLCLEDLRVDYELPDGKLISIGQERFQCAEMLFKPTLVGSNQ---PGLPELTAACLNRC-QEAGFKEEMAANVLLCGGCTMLDGFPERFQRELSLL 364          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ARP2_DROME (Actin-related protein 2 OS=Drosophila melanogaster GN=Arp14D PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 2.855e-24
Identity = 68/204 (33.33%), Postives = 106/204 (51.96%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPDASLTHSCG------KLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFE Y   + +I +  +L  YA G  +G+ +  GDGV     +   +ALP+   R D  GRD+ +Y I  +  RG  +F  SA+F+    + +KL  I  D  +             SY LPDG ++ +  ER++ PEALF+P L+        G+A+L   T+     +   R ++ K+I++SG  T+YPG   RLE+E+K L
Sbjct:  127 MFEKYGFDSAYIAIQAVLTLYAQGLISGVVIDSGDGVTHICPVYEEFALPHLTRRLDIAGRDITRYLIKLLLLRG-YAFNHSADFETVRIMKEKLCYIGYDIEMEQRLALETTVLVESYTLPDGRVIKVGGERFEAPEALFQPHLINVEG---PGIAELAFNTIQAA--DIDIRPELYKHIVLSGGSTMYPGLPSRLEREIKQL 324          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ARP2_SCHPO (Actin-related protein 2 OS=Schizosaccharomyces pombe GN=arp2 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.360e-24
Identity = 62/204 (30.39%), Postives = 109/204 (53.43%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPDASLTHSCGK------LSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFE Y    +++ +  +L+ YA G  +G+ V  GDGV     +     L + + R D  GRD  +Y IS + ++G  +F  +A+F+   ++ +KL  ++ D  L H   +       +Y LPDG ++ + +ERY+ PE LF+P L+GS      G+++ +  T+     +   R  + + I++SG  ++Y G   RLE+E+K L
Sbjct:  123 MFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKG-YAFNRTADFETVREMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQ---PGLSEFIFDTIQAADVD--IRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQL 320          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ARP2_ACACA (Actin-related protein 2 OS=Acanthamoeba castellanii GN=arp2 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.085e-23
Identity = 67/204 (32.84%), Postives = 107/204 (52.45%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPDASLTHSCGKLS------YELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFE Y   A +I +  +L  YA G  TG+ V  GDGV     +  G++LP+   R +  GRD+ +Y I  +  RG   F  +A+F+    + +K   +  D  L       +      Y LPDG ++ I  ER++ PE +F P+L+    +S+ GV +LV   +++   +   RA+   +I++SG  T+YPG   RLE+E+K L
Sbjct:  125 MFEKYGFKAAYIAIQAVLTLYAQGLLTGVVVDSGDGVTHIVPVYEGFSLPHLTRRLNVAGRDVTRYLIKLLLLRG-YVFNRTADFETVRQIKEKFCYVGYDLELEKRLALETTTLVEKYTLPDGRVIPIGAERFEAPECMFNPALV--DQESV-GVGELVFDCINKA--DIDTRAEFYNHIVLSGGSTMYPGLPSRLEKEIKRL 322          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACT7_SOLTU (Actin-75 OS=Solanum tuberosum GN=AC75 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.085e-23
Identity = 69/204 (33.82%), Postives = 107/204 (52.45%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPDAS------LTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N                        +  GDGV  T  I  GYALP+ I R D  GRDL ++    + +RG  SF TSAE +I  D+ +KL  IA D         + S  + ++ELPDG++++I  ER++ PE LF+PS +G      +G+ +    ++ +   +   R D+  NI++SG  T++PG A+R+ +E+ AL
Sbjct:  125 MFETFNXXXXXXXXXXXXXXXXXXXXXXSVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTEHLAKILTERG-YSFTTSAEKEIVRDMKEKLAYIALDFEQELDMVKSSSSVEKNFELPDGQVITIGAERFRCPEVLFQPSTIGM---EAAGIHETTYNSIMKCDVD--IRKDLYGNIVLSGGSTMFPGIADRMSKEITAL 322          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ARP2_CAEBR (Actin-related protein 2 OS=Caenorhabditis briggsae GN=arx-2 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.123e-23
Identity = 69/204 (33.82%), Postives = 108/204 (52.94%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPDA------SLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFE Y   ++++    +L  YA G  TG+ V  GDGV     +  G+AL +   R D  GRD+ +Y I  + QRG  +F  SA+F+    + +KL  IA D       +L  +     Y LPDG ++ +  ER++ PE LF+P L+       +G+++L+   +     +   R D  K+I++SG  T+YPG   RLE+E+K L
Sbjct:  127 MFEQYGFNSIYVAA--VLTLYAQGLLTGVVVDSGDGVTHICPVYEGFALHHLTRRLDIAGRDITKYLIKLLLQRG-YNFNHSADFETVRQMKEKLCYIAYDVEQEERLALETTVLSQQYTLPDGRVIRLGGERFEAPEILFQPHLINVEK---AGLSELLFGCIQ--ASDIDTRLDFYKHIVLSGGTTMYPGLPSRLEKELKQL 322          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACL7B_HUMAN (Actin-like protein 7B OS=Homo sapiens GN=ACTL7B PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.032e-23
Identity = 66/202 (32.67%), Postives = 106/202 (52.48%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIA----PDASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+ +PAM +   ++L+ Y+ G  +GL V  G GV     IS G  LP   SR+D+ G DL  Y +  + + G     T     I   + +K    A     +  L     ++ YELPDG++++I  ER++  E LF+PSL GS+     G+ +L    L R  ++ G + ++A N+++ G  T+  GF ER ++E+  L
Sbjct:  167 MFETFGIPAMHVTSQSLLSIYSYGKTSGLVVESGHGVSHVVPISEGDVLPGLTSRADYAGGDLTNYLMQLLNEAGHA--FTDDHLHIIEHIKKKCCYAAFLPEEELGLVPEELRVDYELPDGKLITIGQERFRCSEMLFQPSLAGSTQ---PGLPELTAACLGRC-QDTGFKEEMAANVLLCGGCTMLDGFPERFQRELSLL 362          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: YGEC_SCHPO (Uncharacterized actin family protein C1347.12 OS=Schizosaccharomyces pombe GN=SPBC1347.12 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.184e-23
Identity = 61/203 (30.05%), Postives = 107/203 (52.71%), Query Frame = 3
Query:    6 FETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            +ET NVPA+   +  +L  YAS   TG+ + CGDG+  +  I +G+++P+ I + + GGRD+  Y +    ++     ++SAE +I  ++ +K   +A D      +   H     +Y+LPD + +++  E +  PE LF P +MGS    +      +Q   S +  +   R+ +  NI++SG  TL  GF ER   E++A+
Sbjct:  129 YETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDY-LQLQLRKSGHELVSSAEKEIVREIKEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGSEASGLH-----IQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAI 325          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ARP2_DICDI (Actin-related protein 2 OS=Dictyostelium discoideum GN=arpB PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.184e-23
Identity = 63/204 (30.88%), Postives = 106/204 (51.96%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPDASLTHSCGK------LSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFE Y   A+++ +  +L  YA G  TG+ V  GDGV     +  GY++P+   R D  GRD+ +Y I  +  RG  +F  +A+F+    + +KL  +A D                +Y LPDG ++ +  ER+Q  EALF PSL+        GV + +   +++   +   +    ++I++SG  ++YPG   RLE+E+++L
Sbjct:  125 MFEKYGFQAVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHIIPVYEGYSIPHLTRRLDVAGRDVTRYLIKLLLLRG-YAFNRTADFETIRQIKEKLCYVAYDVQQEMKLASETTVLVENYTLPDGRVIKVGQERFQASEALFNPSLVDVEG---GGVHEQLFDCITKADRD--LQQGFYQHIVLSGGSSMYPGLPSRLEKEIRSL 322          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTT2_BOVIN (Actin-related protein T2 OS=Bos taurus GN=ACTRT2 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.672e-22
Identity = 69/206 (33.50%), Postives = 111/206 (53.88%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIA--PDASLTHSCGKL--SYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAK----NIIVSGAPTLYPGFAERLEQEVKAL 596
            MFE++NVPA ++    +L  YAS   TGL V  GDGV  T  I  GY+LP+ +++    GRD+ ++    +   G R+F    +  +  D+ +KL  +A  PD  L     ++   Y+LPDG I+ I ++ YQ PEALF P  +G       G++ +V  ++++        AD+ K     I++SG  TL+ G  +RL +E++ L
Sbjct:  127 MFESFNVPAFYLSDQAVLALYASACVTGLVVDSGDGVTCTVPIFEGYSLPHAVTKLYVAGRDITEHLTRLLLASG-RTFSCVLDKALVDDIKEKLCYVALEPDKELCRRPEEVLREYKLPDGNIVPIGDQLYQAPEALFSPEKLGIQN---PGLSKMVSCSITK------CDADIQKTLYGEIVLSGGTTLFQGLDDRLLRELEQL 322          
The following BLAST results are available for this feature:
BLAST of CX300743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 420
Match NameE-valueIdentityDescription
ACL7B_BOVIN2.186e-2433.66Actin-like protein 7B OS=Bos taurus GN=ACTL7B PE=2... [more]
ARP2_DROME2.855e-2433.33Actin-related protein 2 OS=Drosophila melanogaster... [more]
ARP2_SCHPO6.360e-2430.39Actin-related protein 2 OS=Schizosaccharomyces pom... [more]
ARP2_ACACA1.085e-2332.84Actin-related protein 2 OS=Acanthamoeba castellani... [more]
ACT7_SOLTU1.085e-2333.82Actin-75 OS=Solanum tuberosum GN=AC75 PE=3 SV=1[more]
ARP2_CAEBR4.123e-2333.82Actin-related protein 2 OS=Caenorhabditis briggsae... [more]
ACL7B_HUMAN7.032e-2332.67Actin-like protein 7B OS=Homo sapiens GN=ACTL7B PE... [more]
YGEC_SCHPO9.184e-2330.05Uncharacterized actin family protein C1347.12 OS=S... [more]
ARP2_DICDI9.184e-2330.88Actin-related protein 2 OS=Dictyostelium discoideu... [more]
ACTT2_BOVIN2.672e-2233.50Actin-related protein T2 OS=Bos taurus GN=ACTRT2 P... [more]

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Properties
Property NameValue
Genbank descriptionC08001G05SK PhyRootSw1 Citrus sinensis cDNA clone C08001G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300743 ID=CX300743; Name=CX300743; organism=Citrus sinensis; type=EST; length=596bp
TGATGTTCGAAACGTATAACGTACCAGCAATGTTTATAGAAGTACCGAAT
ATCCTAAATCAATACGCGTCAGGCACCAAAACTGGATTGACGGTGTGTTG
TGGTGATGGCGTGATGGTGACGCAAGCGATCAGCAACGGTTATGCGTTGC
CTAATACTATTTCGCGCAGCGATTTCGGTGGTCGGGATCTGAATCAGTAT
TTTATATCGACGATGTACCAACGCGGCGAGCGATCGTTTCTCACGTCTGC
CGAGTTTCAGATCGCTGGCGATGTCATTCAAAAATTGGGTTTGATCGCTC
CCGATGCTTCTTTAACGCATTCTTGTGGCAAACTAAGCTACGAGCTACCT
GATGGCGAGATACTATCGATACAGAACGAAAGATATCAAATACCTGAAGC
TTTATTCAGACCTTCGTTGATGGGATCGAGCTACGATTCGATTTCGGGCG
TCGCCGATCTCGTACAGCAGACCTTGTCACGTGTTCCTGAAGAGGACGGC
GCACGTGCTGATGTAGCGAAGAATATCATCGTATCGGGTGCGCCTACATT
ATATCCAGGTTTCGCAGAGCGTTTAGAACAAGAAGTCAAAGCATTG
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