CX300743

Overview
NameCX300743
Unique NameCX300743
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTT1_HUMAN (Actin-related protein T1 OS=Homo sapiens GN=ACTRT1 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 3.490e-22
Identity = 65/202 (32.18%), Postives = 108/202 (53.47%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIA--PDASLTHSCGKL--SYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET++VP  ++    +   YAS   TGL V  GDGV  T  I  GY+LP+ +++    GRD+ ++    ++  G  +F       +  ++ +KL  IA  P+  L  S G++  +Y LPDG ++   +E YQ+PE LF P  +G       G++ +V  ++ +   +   +  +  +I++SG  TL PG  ERL +EV+ L
Sbjct:  126 MFETFSVPGFYLSNHAVAALYASACVTGLVVDSGDGVTCTVPIFEGYSLPHAVTKLCMAGRDITEHLTRLLFASG-FNFPCILNKAVVNNIKEKLCYIALEPEKELRKSRGEVLGAYRLPDGHVIHFGDELYQVPEVLFAPDQLGI---HSPGLSKMVSSSIMKC--DTDIQNKLYADIVLSGGTTLLPGLEERLMKEVEQL 321          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ARP2_YEAST (Actin-related protein 2 OS=Saccharomyces cerevisiae GN=ARP2 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.558e-22
Identity = 63/204 (30.88%), Postives = 105/204 (51.47%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPDASLTHSCGK------LSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFE Y+   +++ +  +L  YA G  +G+ V  GDGV     +     L +   R D  GRD+ ++ I  + +RG  +F  +A+F+    + +KL  ++ D  L     +       SYELPDG  + +  ER++ PE LF+P L+        GV +L+  T+     +   R+ + K I++SG  ++YPG   RLE+E+K L
Sbjct:  126 MFEKYDFGGVYVAIQAVLALYAQGLSSGVVVDSGDGVTHIVPVYESVVLSHLTRRLDVAGRDVTRHLIDLLSRRG-YAFNRTADFETVRQIKEKLCYVSYDLDLDTKLARETTALVESYELPDGRTIKVGQERFEAPECLFQPGLVDVEQ---PGVGELLFNTVQSADVD--IRSSLYKAIVLSGGSSMYPGLPSRLEKELKQL 323          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACL7B_RAT (Actin-like protein 7B OS=Rattus norvegicus GN=Actl7b PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.558e-22
Identity = 65/202 (32.18%), Postives = 107/202 (52.97%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQK--LGLIAPDASLTHSCGKL--SYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+ +PAM +    +L+ Y+ G  +GL V  G GV     IS G  LP   SR D+ G DL  Y +  + + G +   +     I   + +K     + P+  ++    +L   YELPDG++++I  ER++  E LF+PSL+GS+     G+ +L    L R  +  G + ++A N+++ G  T+  GF ER ++E+  L
Sbjct:  169 MFETFGIPAMHVTSQALLSIYSYGKTSGLVVESGHGVSHVVPISEGDLLPGLPSRVDYAGCDLTNYLMQLLNEAGHK--FSDDHLHIIEHIKKKCCYAALLPEEEMSLGLDELHVDYELPDGKVITIGQERFRCSEMLFKPSLVGSTQ---PGLPELTATCLDRC-QGTGFKEEMAANVLLCGGCTMLDGFPERFQRELSLL 364          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACL7B_MACFA (Actin-like protein 7B OS=Macaca fascicularis GN=ACTL7B PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.558e-22
Identity = 65/202 (32.18%), Postives = 105/202 (51.98%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIA----PDASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MF T+ +PAM +   ++L+ Y+ G  +GL V  G GV     IS G  LP   SR+D+ G DL  Y +  + + G     T     I   + +K    A     +  L     ++ YELPDG++++I  ER++  E LF+PSL GS+     G+ +L    L R  ++ G + ++A N+++ G  T+  GF ER ++E+  L
Sbjct:  167 MFGTFGIPAMHVTSQSLLSIYSYGKTSGLVVESGHGVSHVVPISEGDVLPGLTSRADYAGGDLTNYLMQLLNEAGHA--FTDDHLHIIEHIKKKCCYAAFLPEEELGLVPEELRVDYELPDGKLITIGQERFRCSEMLFQPSLAGSTQ---PGLPELTAACLGRC-QDTGFKEEMAANVLLCGGCTMLDGFPERFQRELSLL 362          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTT2_MOUSE (Actin-related protein T2 OS=Mus musculus GN=Actrt2 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.953e-22
Identity = 67/206 (32.52%), Postives = 109/206 (52.91%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIA--PDASLTHSCGKL--SYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAK----NIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+ VPA ++    +L  Y+S   TGL V  GDGV  T  I  GY+LP+ +S+    G+D+ +     +   G R+F    E  +A D+ +KL  +A  P+  L+     +   Y+LPDG ++ I ++ YQ PE LF P  +G+      G+A +   ++++        AD+ K     I++SG  TL+ G  +RL +E++ L
Sbjct:  127 MFETFEVPAFYLSDQAVLALYSSACVTGLVVDSGDGVTCTVPIYEGYSLPHAVSKLYVAGKDITELLTRLLLASG-RAFPCPLEKALADDIKEKLCYVALEPEEELSRRAEDVLREYKLPDGNVIYIGDQLYQAPEVLFSPDQLGTHG---PGLAQMASNSITK------CDADIQKTLFGEIVLSGGSTLFQGLDDRLLKELEQL 322          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTT1_MACFA (Actin-related protein T1 OS=Macaca fascicularis GN=ACTRT1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.775e-22
Identity = 64/202 (31.68%), Postives = 107/202 (52.97%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIA--PDASLTHSCGKL--SYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFE ++VP  ++    +   YAS   TGL V  GDGV     I  GY+LP+ +++    GRD+ ++    ++  G  +F       +A ++ +KL  IA  P+  L  S G++  +Y LPDG ++   +E YQ+PE LF P  +G       G++ +V  ++ +   +   +  +   I++SG  TL+PG  ERL +EV+ L
Sbjct:  125 MFENFSVPGFYLSNHAVAALYASACVTGLVVDSGDGVTCAVPIFEGYSLPHAVTKLYTAGRDITEHLTQLLFANG-FNFPCILNKAVANNIKEKLCYIALEPEKELRKSRGEVLGAYRLPDGHVIHFGDELYQVPEVLFAPDQLGI---HSPGLSKMVSSSIMKC--DTDIQNKLYAEIVLSGGTTLFPGLEERLMKEVEQL 320          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACL7B_MOUSE (Actin-like protein 7B OS=Mus musculus GN=Actl7b PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.262e-21
Identity = 64/202 (31.68%), Postives = 107/202 (52.97%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQK--LGLIAPDASLTHSCGKL--SYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            +FET+ +PAM +    +L+ Y+ G  +GL V  G GV     IS G  LP   SR D+ G DL  Y +  + + G +   +     I   + +K     + P+  ++    +L   YELPDG+I++I  ER++  E LF+PSL+G +     G+ +L    L+R  +  G + ++A N+++ G  T+  GF ER ++E+  L
Sbjct:  170 LFETFGIPAMHVTSQALLSIYSYGKTSGLVVESGHGVSHVVPISEGDLLPGLPSRVDYAGCDLTNYLMQLLNEAGHK--FSDDHLHIIEHIKKKCCYAALLPEEEMSLGLDELHVDYELPDGKIITIGQERFRCSEMLFKPSLVGCTQ---PGLPELTATCLARC-QGTGFKEEMAANVLLCGGCTMLDGFPERFQRELSLL 365          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACT29_DICDI (Putative actin-29 OS=Dictyostelium discoideum GN=act29 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.040e-21
Identity = 60/203 (29.56%), Postives = 110/203 (54.19%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPDASLTHSCGKL-------SYELPDGEILSIQNERYQIPEALFRPSLMG-SSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEV 587
            MFET++ P  ++   ++L+ Y+ G   G+ +  G+ +  T  I  G+++PN+I++ +  G  + +Y +  + +    +F TS+E +I  D+ +K G I+ + +      K+       SY+LPDG++++I  ER+   E LF PSL+   SY    GV  L+  ++     E   R  +  NII+SG  T+ P F +R++ E+
Sbjct:  130 MFETFDTPNFYLANQSVLSLYSKGRLNGIVLDSGNNITYTVPIYEGHSIPNSINQLEIAGNSVTEYLMKILNENRGYNFTTSSEKEIVKDIKEKFGFISLNYNNDLYSTKVATNEIEKSYQLPDGQMITIGKERFICGEVLFEPSLVNIESY----GVHQLLYNSIINCDFE--IRRGLYNNIILSGGTTMLPDFNDRIKNEL 326          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACT2_DAUCA (Actin-2 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.582e-21
Identity = 69/208 (33.17%), Postives = 110/208 (52.88%), Query Frame = 3
Query:    3 MFETYNVPAMFI--EVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLI------APDASLTHSCGKLSYELPDGEILSIQNERYQ-IPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFA-ERLEQEVKAL 596
            MFET+NVPAM++   + + L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL    +  + +RG     T+       + +  + L+       P A L     + +YELPDG++++I   R    PE LF+PS++G      +G+ +    ++ +   +   R D+  NI++SG  T++PG     + +E+ AL
Sbjct:  127 MFETFNVPAMYVLSRLRSCLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDGLMKILTERGYMFTTTATGMSYMKEKLAYVALVMSKSWRLPRARL---LVEKNYELPDGQVITIGAVRGSGCPEVLFQPSMIGM---ESAGIHETTYNSIMKCDVD--IRKDLYGNIVLSGGSTMFPGSCYASMSKEITAL 326          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTT2_MACFA (Actin-related protein T2 OS=Macaca fascicularis GN=ACTRT2 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.266e-20
Identity = 65/206 (31.55%), Postives = 107/206 (51.94%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIA--PDASLTHSCGKL--SYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAK----NIIVSGAPTLYPGFAERLEQEVKAL 596
            MFE + VPA ++    +L  YAS   TGL V  GDGV  T  I  GY+LP+ +++    GRD+ +     +   G  +F    +  +  D+ +KL  +A  P+  L+    ++   Y+LPDG I+S+ +   Q PEALF P  +G       G++ +V  ++++        AD+ K     I++SG  TL+ G  +RL +E++ L
Sbjct:  127 MFENFGVPAFYLSDQAVLALYASACVTGLVVDSGDGVTCTVPIFEGYSLPHAVTKLHVAGRDITELLTQLLLASG-HTFSCELDKGLVDDIKKKLCYVALEPEKELSRRPEEVLREYKLPDGNIISLGDPLCQAPEALFAPQQLGC---QSPGLSHMVSSSITK------CDADIQKILFGEIVLSGGTTLFHGLDDRLLKELEQL 322          
The following BLAST results are available for this feature:
BLAST of CX300743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 420
Match NameE-valueIdentityDescription
ACTT1_HUMAN3.490e-2232.18Actin-related protein T1 OS=Homo sapiens GN=ACTRT1... [more]
ARP2_YEAST4.558e-2230.88Actin-related protein 2 OS=Saccharomyces cerevisia... [more]
ACL7B_RAT4.558e-2232.18Actin-like protein 7B OS=Rattus norvegicus GN=Actl... [more]
ACL7B_MACFA4.558e-2232.18Actin-like protein 7B OS=Macaca fascicularis GN=AC... [more]
ACTT2_MOUSE5.953e-2232.52Actin-related protein T2 OS=Mus musculus GN=Actrt2... [more]
ACTT1_MACFA7.775e-2231.68Actin-related protein T1 OS=Macaca fascicularis GN... [more]
ACL7B_MOUSE2.262e-2131.68Actin-like protein 7B OS=Mus musculus GN=Actl7b PE... [more]
ACT29_DICDI5.040e-2129.56Putative actin-29 OS=Dictyostelium discoideum GN=a... [more]
ACT2_DAUCA6.582e-2133.17Actin-2 OS=Daucus carota PE=2 SV=1[more]
ACTT2_MACFA4.266e-2031.55Actin-related protein T2 OS=Macaca fascicularis GN... [more]

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Properties
Property NameValue
Genbank descriptionC08001G05SK PhyRootSw1 Citrus sinensis cDNA clone C08001G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300743 ID=CX300743; Name=CX300743; organism=Citrus sinensis; type=EST; length=596bp
TGATGTTCGAAACGTATAACGTACCAGCAATGTTTATAGAAGTACCGAAT
ATCCTAAATCAATACGCGTCAGGCACCAAAACTGGATTGACGGTGTGTTG
TGGTGATGGCGTGATGGTGACGCAAGCGATCAGCAACGGTTATGCGTTGC
CTAATACTATTTCGCGCAGCGATTTCGGTGGTCGGGATCTGAATCAGTAT
TTTATATCGACGATGTACCAACGCGGCGAGCGATCGTTTCTCACGTCTGC
CGAGTTTCAGATCGCTGGCGATGTCATTCAAAAATTGGGTTTGATCGCTC
CCGATGCTTCTTTAACGCATTCTTGTGGCAAACTAAGCTACGAGCTACCT
GATGGCGAGATACTATCGATACAGAACGAAAGATATCAAATACCTGAAGC
TTTATTCAGACCTTCGTTGATGGGATCGAGCTACGATTCGATTTCGGGCG
TCGCCGATCTCGTACAGCAGACCTTGTCACGTGTTCCTGAAGAGGACGGC
GCACGTGCTGATGTAGCGAAGAATATCATCGTATCGGGTGCGCCTACATT
ATATCCAGGTTTCGCAGAGCGTTTAGAACAAGAAGTCAAAGCATTG
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