CX300743

Overview
NameCX300743
Unique NameCX300743
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTT1_RAT (Actin-related protein T1 OS=Rattus norvegicus GN=Actrt1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.896e-18
Identity = 59/201 (29.35%), Postives = 106/201 (52.74%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPDASLTHSCGKLS---YELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFE +NVPA+++    +    AS   TGL +  GDGV  T  I  GY+LP  I++    GRD+ ++    +  +G  +F       +  D+ +KL  ++  +  +  C + S   Y+LPDG  + + +   Q+PE LF P  +G  +D   G++ +V  ++ +   +   + ++   I++SG  TL+PG  +RL +E++ L
Sbjct:  127 MFEKFNVPALYLCNHAVGALCASACITGLVLDSGDGVTCTVPIYEGYSLPRAITKLYVAGRDITEHLTRLLLAKG-YTFPCILNKAVVDDIKEKLCTVSWGSKDSEKCYQRSLSEYKLPDGNTIQMSDHLCQVPEVLFTPEHLG-IHD--LGISKMVCNSIMKC--DTDIQENLFAEIVLSGGTTLFPGLQDRLLKELEVL 321          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ARPM1_HUMAN (Actin-related protein M1 OS=Homo sapiens GN=ARPM1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.162e-17
Identity = 56/198 (28.28%), Postives = 97/198 (48.99%), Query Frame = 3
Query:    6 FETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIA----PDASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEV 587
            FE   VPA ++ +  +L  +A+G  TGL +  G GV  +  I  GY LP+ + + D  G DL  Y +  M   G    L++++ +I  D+ +    +A     + +    C +  Y+LPDG+++ + ++ +  PEALF P  M      I  +        S +  + G R     NII++G  T +PG  +RL +++
Sbjct:  123 FEHLGVPAFYMSIQAVLALFAAGFTTGLVLNSGAGVTQSVPIFEGYCLPHGVQQLDLAGLDLTNYLMVLMKNHG-IMLLSASDRKIVEDIKESFCYVAMNYEEEMAKKPDCLEKVYQLPDGKVIQLHDQLFSCPEALFSPCHMNLEAPGIDKIC-----FSSIMKCDTGLRNSFFSNIILAGGSTSFPGLDKRLVKDI 314          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ARP3_DICDI (Actin-related protein 3 OS=Dictyostelium discoideum GN=arpC PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.191e-16
Identity = 66/218 (30.28%), Postives = 102/218 (46.79%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTK-------TGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPDASLTHSCGKLSYELPDGEILSIQ---------------NERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVK 590
            MFET+NVP ++I V  +L   AS T        TG  +  GDGV     IS GY + ++I      GRD++ Y    M +R E +   +   +IA  V ++   + PD  +    GK   E PD  I +I                 ER+  PE  F P +  S Y  ++ +  +V  T+   P +   R  + KNI++SG  T++  F +RL+++VK
Sbjct:  131 MFETFNVPGLYIAVQAVLALAASWTSKNAEKTLTGTVIDSGDGVTHVIPISEGYVIGSSIKHIPIAGRDISSYVQQIMRER-EPNIPPAESLEIAKRVKEQYSYVCPD--IVKEFGKYDSE-PDKWIKTINAQDSVTKKPFSYDVGYERFLGPELFFNPEIASSDY--LTPLPKVVDDTIQSCPID--CRRGLYKNIVLSGGSTMFKDFGKRLQRDVK 340          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTT1_MOUSE (Actin-related protein T1 OS=Mus musculus GN=Actrt1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.326e-16
Identity = 57/201 (28.36%), Postives = 104/201 (51.74%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPDASLTH-SCGKL--SYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFE +NVPA+++    +    AS   TGL +  GDGV  T  +  GY+LP+ I++    GRD+ ++    +  +G  +F       +  D+ +KL  ++     T  +C +    Y LPDG  + + +   Q+PE LF P  +G  +D   G++ +V  ++     +   + ++   I++SG  T++PG  +RL +E++ L
Sbjct:  127 MFEKFNVPALYLCNHAVGALCASACITGLVLDSGDGVTCTVPVYEGYSLPHAITKLYVAGRDITEHLTRLLLAKG-YTFPCILNKAVVDDIKEKLCTVSLGYKDTEKNCQQFLRKYTLPDGNTIQMSDHLCQVPEVLFTPDHLG-IHD--LGISKMVCNSIMNC--DTDIQENLFAEIVLSGGTTMFPGLQDRLLKELEDL 321          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACT10_SOLTU (Actin-85C (Fragment) OS=Solanum tuberosum GN=AC85C PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.326e-16
Identity = 43/91 (47.25%), Postives = 58/91 (63.74%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDV 275
            MFET+N PAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  + +  + +RG  SF T+AE +I  DV
Sbjct:  105 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERG-YSFTTTAEREIVRDV 194          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTL9_HUMAN (Actin-like protein 9 OS=Homo sapiens GN=ACTL9 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.420e-15
Identity = 56/198 (28.28%), Postives = 95/198 (47.98%), Query Frame = 3
Query:    6 FETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPDASLTHSCGKLSY----ELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEV 587
            FE+   PAM++   ++L+ YA G  +GL V  G GV  T  +  GY L +   R D  G  L  +    + Q G    L   +  +  ++      +A D     +  +  Y    +LPDG  +++  E +Q PE LF P  +     S  G++ + +Q+L ++  E   RAD+A+N+++ G  +L+ GF  R   E+
Sbjct:  167 FESLRSPAMYVASQSVLSVYAHGRVSGLVVDTGHGVTYTVPVFQGYNLLHATERLDLAGNHLTAFLAEMLLQAGLP--LGQQDLDLVENIKHHYCYVASDFQKEQARPEQEYKRTLKLPDGRTVTLGKELFQCPELLFNPPEVPGL--SPVGLSTMAKQSLRKLSLE--MRADLAQNVLLCGGSSLFTGFEGRFRAEL 358          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ARP4_ARATH (Actin-related protein 4 OS=Arabidopsis thaliana GN=ARP4 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 57/236 (24.15%), Postives = 104/236 (44.07%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRG---------ERSFLTSAEFQ--------------------IAGDVIQKLGLIAP---DASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLM---------GSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEV 587
            MFE Y VPA+F+    +L  +A+G  T L V CG G      + +GY L   +  S  GG  L    + ++  +G         +R  + + EFQ                    I GD+   +  +     D     +    SYELPDG+ L I  +R+++P+ +F PS++              S+ G+  +V +++++   +   R ++  +I+++G  +      ERLE+++
Sbjct:  147 MFEKYKVPALFMAKNPVLTSFATGRATSLVVDCGGGSTTISPVHDGYVLQKAVVSSPLGGEFLTDCLLKSLESKGIKIRPRYSFKRKEVRAGEFQVEDVDIPDTTESYKLFCQRMIVGDIKDSICRVPDTPYDDKSYSNIPTTSYELPDGQTLEIGADRFKVPDVMFNPSIVQTIPGMEKYAEMIPSVRGLPHMVMESINKCDVD--IRRELYSSILLAGGTSSMQQLKERLEKDL 380          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACT28_DICDI (Putative actin-28 OS=Dictyostelium discoideum GN=act28 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 54/200 (27.00%), Postives = 95/200 (47.50%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPDA--SLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+  PA+++E   + + Y SG  TG+ +  GD       +  G ALP   S   F G DL       +   G      + E +I  D+ +KL  ++ D    +     + SYELPDG++++I  E     E LF P +   +  ++ G+   +  ++ +   +     D+  N+++SG  T++PG   R+ +E+  L
Sbjct:  115 MFETFKTPAIYVENQAVFSIYNSGRMTGIVLDSGDSASHVVPVYEGLALPLATSSLGFAGCDLTDQMSLLLNDLG-----YNLEREIVRDIKEKLSYVSSDFLWEIDDPSLEKSYELPDGQVITIGKELLACSEGLFLPYVFFGT--NLDGIDKAIYNSIMKCDVD--IHNDLYGNVVLSGGSTMFPGIEYRMYKELTQL 305          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ARP3_ACACA (Actin-related protein 3 OS=Acanthamoeba castellanii GN=ARP3 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.570e-14
Identity = 59/223 (26.46%), Postives = 101/223 (45.29%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTK--------TGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAE-FQIAGDVIQKLGLIAPDA------------------SLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVK 590
            MFET+NVP ++I V  +L   AS T         TG  +  GDGV     ++ GY + ++I      GRD+  + +  + +R E+  +  AE  ++A  + +    + PD                       S GK  Y +  G       ER+  PE  F P +  S  D ++ +  +V +T+   P +   R  + KNI++SG  T++  F +RL++++K
Sbjct:  138 MFETFNVPGLYIAVQAVLALAASWTSKQVTEKTLTGTVIDSGDGVTHVIPVAEGYVIGSSIKHIPLAGRDITNFVLQLLRERNEK--IPPAETLEVAKRIKETFSYVCPDIVKEFKKYDTEPDKWFKTYEGIESVGKKPYNVDVG------YERFLGPEIFFNPEIFSS--DFLTPLPKVVDETIQSCPID--TRRGLYKNIVLSGGSTMFKDFGKRLQRDIK 348          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ARP7_ARATH (Actin-related protein 7 OS=Arabidopsis thaliana GN=ARP7 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.498e-14
Identity = 51/194 (26.29%), Postives = 89/194 (45.88%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPDASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQE 584
            MFET+NV   +     +L+ YA G  +G TV  G G +    +  G        R + GG +L + F   + +      L+ ++ +   +              T +C    + LPDG+++SI  ERY + EALF+PS++G       G+ + + + +S V  E+     + +N ++ G  T   GF  R ++E
Sbjct:  111 MFETFNVSGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVLEGAVQHIASKRFELGGTELTKLFAQELGKTNPSMNLSMSDVEKLKEQYANCAEDEIAYKKTQNCEIEQHTLPDGQVISIGRERYSVGEALFQPSILGLEE---HGIVEQLVRIISTVSSEN--HRQLLENTVLCGGTTSMTGFESRFQKE 299          
The following BLAST results are available for this feature:
BLAST of CX300743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 420
Match NameE-valueIdentityDescription
ACTT1_RAT8.896e-1829.35Actin-related protein T1 OS=Rattus norvegicus GN=A... [more]
ARPM1_HUMAN1.162e-1728.28Actin-related protein M1 OS=Homo sapiens GN=ARPM1 ... [more]
ARP3_DICDI2.191e-1630.28Actin-related protein 3 OS=Dictyostelium discoideu... [more]
ACTT1_MOUSE8.326e-1628.36Actin-related protein T1 OS=Mus musculus GN=Actrt1... [more]
ACT10_SOLTU8.326e-1647.25Actin-85C (Fragment) OS=Solanum tuberosum GN=AC85C... [more]
ACTL9_HUMAN1.420e-1528.28Actin-like protein 9 OS=Homo sapiens GN=ACTL9 PE=2... [more]
ARP4_ARATH1.855e-1524.15Actin-related protein 4 OS=Arabidopsis thaliana GN... [more]
ACT28_DICDI1.855e-1527.00Putative actin-28 OS=Dictyostelium discoideum GN=a... [more]
ARP3_ACACA1.570e-1426.46Actin-related protein 3 OS=Acanthamoeba castellani... [more]
ARP7_ARATH3.498e-1426.29Actin-related protein 7 OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank descriptionC08001G05SK PhyRootSw1 Citrus sinensis cDNA clone C08001G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300743 ID=CX300743; Name=CX300743; organism=Citrus sinensis; type=EST; length=596bp
TGATGTTCGAAACGTATAACGTACCAGCAATGTTTATAGAAGTACCGAAT
ATCCTAAATCAATACGCGTCAGGCACCAAAACTGGATTGACGGTGTGTTG
TGGTGATGGCGTGATGGTGACGCAAGCGATCAGCAACGGTTATGCGTTGC
CTAATACTATTTCGCGCAGCGATTTCGGTGGTCGGGATCTGAATCAGTAT
TTTATATCGACGATGTACCAACGCGGCGAGCGATCGTTTCTCACGTCTGC
CGAGTTTCAGATCGCTGGCGATGTCATTCAAAAATTGGGTTTGATCGCTC
CCGATGCTTCTTTAACGCATTCTTGTGGCAAACTAAGCTACGAGCTACCT
GATGGCGAGATACTATCGATACAGAACGAAAGATATCAAATACCTGAAGC
TTTATTCAGACCTTCGTTGATGGGATCGAGCTACGATTCGATTTCGGGCG
TCGCCGATCTCGTACAGCAGACCTTGTCACGTGTTCCTGAAGAGGACGGC
GCACGTGCTGATGTAGCGAAGAATATCATCGTATCGGGTGCGCCTACATT
ATATCCAGGTTTCGCAGAGCGTTTAGAACAAGAAGTCAAAGCATTG
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