CX300743

Overview
NameCX300743
Unique NameCX300743
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ARP3_CHICK (Actin-related protein 3 OS=Gallus gallus GN=ACTR3 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.244e-11
Identity = 56/221 (25.34%), Postives = 94/221 (42.53%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTK--------TGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPDASLTHSCGKLSYELPDGE-----------------ILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVK 590
            MFE++NVP ++I V  +L   AS T         TG  +  GDGV     ++ GY + + I      GRD+  YFI  + +  E         + A  V ++   + PD  L     K      DG                   + +  ER+  PE  F P    ++ D    ++++V + +   P +   R  + KNI++SG  T++  F  RL++++K
Sbjct:  130 MFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDIT-YFIQQLLREREVGIPPEQSLETAKAVKERFSYVCPD--LVKEFNKYD---TDGTKWIKQYTGINAISKKEFTIDVGYERFLGPEIFFHPEF--ANPDFTQPISEVVDEVIQNCPID--VRRPLYKNIVLSGGSTMFRDFGRRLQRDLK 340          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACT3_LYTPI (Actin, cytoskeletal 3 (Fragment) OS=Lytechinus pictus PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.625e-11
Identity = 39/121 (32.23%), Postives = 72/121 (59.50%), Query Frame = 3
Query:  249 AEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKA 593
            AE +I  ++ +KL  +A D       + + S  + SYELPDG++++I NER++ PEALF+PS +G      +G+ +    ++ +   +   R  +  N ++SG  T++PG A+R+++E+ A
Sbjct:    1 AEREIVRNIKEKLCYVALDFEQEMQTAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGM---ESAGIHETCYNSIMKCDVD--IRKFLYANTVLSGGSTMFPGIADRMQKEITA 116          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ARP3_RAT (Actin-related protein 3 OS=Rattus norvegicus GN=Actr3 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.772e-11
Identity = 56/221 (25.34%), Postives = 94/221 (42.53%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTK--------TGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPDASLTHSCGKLSYELPDGE-----------------ILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVK 590
            MFE++NVP ++I V  +L   AS T         TG  +  GDGV     ++ GY + + I      GRD+  YFI  + +  E         + A  V ++   + PD  L     K      DG                   + +  ER+  PE  F P    ++ D    ++++V + +   P +   R  + KNI++SG  T++  F  RL++++K
Sbjct:  130 MFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDIT-YFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPD--LVKEFNKYD---TDGSKWIKQYTGVNAISKKEFSIDVGYERFLGPEIFFHPEF--ANPDFTQPISEVVDEVIQNCPID--VRRPLYKNIVLSGGSTMFRDFGRRLQRDLK 340          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ARP3_PONAB (Actin-related protein 3 OS=Pongo abelii GN=ACTR3 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 2.772e-11
Identity = 56/221 (25.34%), Postives = 94/221 (42.53%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTK--------TGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPDASLTHSCGKLSYELPDGE-----------------ILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVK 590
            MFE++NVP ++I V  +L   AS T         TG  +  GDGV     ++ GY + + I      GRD+  YFI  + +  E         + A  V ++   + PD  L     K      DG                   + +  ER+  PE  F P    ++ D    ++++V + +   P +   R  + KNI++SG  T++  F  RL++++K
Sbjct:  130 MFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDIT-YFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPD--LVKEFNKYD---TDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEF--ANPDFTQPISEVVDEVIQNCPID--VRRPLYKNIVLSGGSTMFRDFGRRLQRDLK 340          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ARP3_MOUSE (Actin-related protein 3 OS=Mus musculus GN=Actr3 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 2.772e-11
Identity = 56/221 (25.34%), Postives = 94/221 (42.53%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTK--------TGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPDASLTHSCGKLSYELPDGE-----------------ILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVK 590
            MFE++NVP ++I V  +L   AS T         TG  +  GDGV     ++ GY + + I      GRD+  YFI  + +  E         + A  V ++   + PD  L     K      DG                   + +  ER+  PE  F P    ++ D    ++++V + +   P +   R  + KNI++SG  T++  F  RL++++K
Sbjct:  130 MFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDIT-YFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPD--LVKEFNKYD---TDGSKWIKQYTGVNAISKKEFSIDVGYERFLGPEIFFHPEF--ANPDFTQPISEVVDEVIQNCPID--VRRPLYKNIVLSGGSTMFRDFGRRLQRDLK 340          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ARP3_HUMAN (Actin-related protein 3 OS=Homo sapiens GN=ACTR3 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 2.772e-11
Identity = 56/221 (25.34%), Postives = 94/221 (42.53%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTK--------TGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPDASLTHSCGKLSYELPDGE-----------------ILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVK 590
            MFE++NVP ++I V  +L   AS T         TG  +  GDGV     ++ GY + + I      GRD+  YFI  + +  E         + A  V ++   + PD  L     K      DG                   + +  ER+  PE  F P    ++ D    ++++V + +   P +   R  + KNI++SG  T++  F  RL++++K
Sbjct:  130 MFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDIT-YFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPD--LVKEFNKYD---TDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEF--ANPDFTQPISEVVDEVIQNCPID--VRRPLYKNIVLSGGSTMFRDFGRRLQRDLK 340          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ARP3_BOVIN (Actin-related protein 3 OS=Bos taurus GN=ACTR3 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 2.772e-11
Identity = 56/221 (25.34%), Postives = 94/221 (42.53%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTK--------TGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPDASLTHSCGKLSYELPDGE-----------------ILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVK 590
            MFE++NVP ++I V  +L   AS T         TG  +  GDGV     ++ GY + + I      GRD+  YFI  + +  E         + A  V ++   + PD  L     K      DG                   + +  ER+  PE  F P    ++ D    ++++V + +   P +   R  + KNI++SG  T++  F  RL++++K
Sbjct:  130 MFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDIT-YFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPD--LVKEFNKYD---TDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEF--ANPDFTQPISEVVDEVIQNCPID--VRRPLYKNIVLSGGSTMFRDFGRRLQRDLK 340          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ARP3_DROME (Actin-related protein 3 OS=Drosophila melanogaster GN=Arp66B PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 4.728e-11
Identity = 55/220 (25.00%), Postives = 95/220 (43.18%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASG--------TKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPDASLTHSCGKLSYELPDGEIL----------------SIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVK 590
            MFET+NVP ++I V  +L   AS         T TG+ V  GDGV     ++ GY + + I      GR++   FI ++ +  E         + A  + +K   I PD +   +     Y+   G+ +                 +  ER+  PE  F P    S+ D    ++++V   +   P +   R  +  NI++SG  T++  F  RL++++K
Sbjct:  130 MFETFNVPGLYIAVQAVLALAASWASRSAEERTLTGIVVDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRNITS-FIQSLLREREVGIPPEQSLETAKAIKEKHCYICPDIAKEFA----KYDTEPGKWIRNFSGVNTVTKAPFNVDVGYERFLGPEIFFHPEF--SNPDFTIPLSEIVDNVIQNCPID--VRRPLYNNIVLSGGSTMFKDFGRRLQRDIK 340          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: CT134_MOUSE (Putative uncharacterized actin family protein C20orf134 homolog OS=Mus musculus PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.175e-11
Identity = 55/205 (26.83%), Postives = 93/205 (45.37%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMY--------QRGERSFLTSAEFQIAGDVIQKLGLIAPDASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKA 593
            +FE   VPA  +    +L   + G  +GL V  G GV     I  G++      R +  G  L++YF   +         Q   R  +T  + +     +   G I   A    +C    + L +G  + + +ER++ PE +F+PSL+G       G+  L  Q L ++P     R  +A  ++++G  TL+PGF ER+  E++A
Sbjct:   91 LFEALTVPACHMANTALLALCSIGAFSGLAVEAGAGVCHATPIYAGHSWHKATFRLNVAGSTLSRYFRDLLVAACPDLQLQGLSRKTVTQLKKRCCYVSLDFQGDICDPARHQRAC----FCLGNGCYVRLGSERFRCPEPIFQPSLLGHPEP---GLPTLAFQALQKIPTT--LRTRLANTVVLAGGSTLFPGFVERMNLELEA 286          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACT4_LYTPI (Actin, cytoskeletal 4 (Fragment) OS=Lytechinus pictus PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.175e-11
Identity = 36/112 (32.14%), Postives = 67/112 (59.82%), Query Frame = 3
Query:  261 IAGDVIQKLGLIAPDASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            +A D  Q++   A  +SL     + SYELPDG++++  NER++ PE+L++PS +G      SG+ +    ++     +   R D+  N ++SG  T++PG A+R+++E+ +L
Sbjct:    6 VALDFEQEMQTAASSSSL-----EKSYELPDGQVITTGNERFRAPESLYQPSFLGM---ESSGIHETTYNSIMMCDVD--IRKDLYANTVLSGGSTIFPGIADRMQKEITSL 107          
The following BLAST results are available for this feature:
BLAST of CX300743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 420
Match NameE-valueIdentityDescription
ARP3_CHICK1.244e-1125.34Actin-related protein 3 OS=Gallus gallus GN=ACTR3 ... [more]
ACT3_LYTPI1.625e-1132.23Actin, cytoskeletal 3 (Fragment) OS=Lytechinus pic... [more]
ARP3_RAT2.772e-1125.34Actin-related protein 3 OS=Rattus norvegicus GN=Ac... [more]
ARP3_PONAB2.772e-1125.34Actin-related protein 3 OS=Pongo abelii GN=ACTR3 P... [more]
ARP3_MOUSE2.772e-1125.34Actin-related protein 3 OS=Mus musculus GN=Actr3 P... [more]
ARP3_HUMAN2.772e-1125.34Actin-related protein 3 OS=Homo sapiens GN=ACTR3 P... [more]
ARP3_BOVIN2.772e-1125.34Actin-related protein 3 OS=Bos taurus GN=ACTR3 PE=... [more]
ARP3_DROME4.728e-1125.00Actin-related protein 3 OS=Drosophila melanogaster... [more]
CT134_MOUSE6.175e-1126.83Putative uncharacterized actin family protein C20o... [more]
ACT4_LYTPI6.175e-1132.14Actin, cytoskeletal 4 (Fragment) OS=Lytechinus pic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC08001G05SK PhyRootSw1 Citrus sinensis cDNA clone C08001G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300743 ID=CX300743; Name=CX300743; organism=Citrus sinensis; type=EST; length=596bp
TGATGTTCGAAACGTATAACGTACCAGCAATGTTTATAGAAGTACCGAAT
ATCCTAAATCAATACGCGTCAGGCACCAAAACTGGATTGACGGTGTGTTG
TGGTGATGGCGTGATGGTGACGCAAGCGATCAGCAACGGTTATGCGTTGC
CTAATACTATTTCGCGCAGCGATTTCGGTGGTCGGGATCTGAATCAGTAT
TTTATATCGACGATGTACCAACGCGGCGAGCGATCGTTTCTCACGTCTGC
CGAGTTTCAGATCGCTGGCGATGTCATTCAAAAATTGGGTTTGATCGCTC
CCGATGCTTCTTTAACGCATTCTTGTGGCAAACTAAGCTACGAGCTACCT
GATGGCGAGATACTATCGATACAGAACGAAAGATATCAAATACCTGAAGC
TTTATTCAGACCTTCGTTGATGGGATCGAGCTACGATTCGATTTCGGGCG
TCGCCGATCTCGTACAGCAGACCTTGTCACGTGTTCCTGAAGAGGACGGC
GCACGTGCTGATGTAGCGAAGAATATCATCGTATCGGGTGCGCCTACATT
ATATCCAGGTTTCGCAGAGCGTTTAGAACAAGAAGTCAAAGCATTG
back to top