CX300743

Overview
NameCX300743
Unique NameCX300743
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTB_SPECI (Actin, cytoplasmic 1 OS=Spermophilus citellus GN=ACTB PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.244e-36
Identity = 84/205 (40.98%), Postives = 125/205 (60.98%), Query Frame = 3 
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEED-GARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N PAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF T+AE +I  D+ +KL  +A D       + + S  + SYELPDG++++I NER++ PEALF+PS +G     I       + T + + + D   R D+  N ++SG  T+YPG A+R+++E+ AL
Sbjct:  123 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG-YSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIH------ETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL 320
[Close]
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTB_SIGHI (Actin, cytoplasmic 1 OS=Sigmodon hispidus GN=ACTB PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.244e-36
Identity = 84/205 (40.98%), Postives = 125/205 (60.98%), Query Frame = 3 
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEED-GARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N PAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF T+AE +I  D+ +KL  +A D       + + S  + SYELPDG++++I NER++ PEALF+PS +G     I       + T + + + D   R D+  N ++SG  T+YPG A+R+++E+ AL
Sbjct:  123 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG-YSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIH------ETTFNSIMKCDVDIRKDLYANTVLSGGTTIYPGIADRMQKEITAL 320
[Close]
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTB_SHEEP (Actin, cytoplasmic 1 OS=Ovis aries GN=ACTB PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.244e-36
Identity = 84/205 (40.98%), Postives = 125/205 (60.98%), Query Frame = 3 
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEED-GARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N PAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF T+AE +I  D+ +KL  +A D       + + S  + SYELPDG++++I NER++ PEALF+PS +G     I       + T + + + D   R D+  N ++SG  T+YPG A+R+++E+ AL
Sbjct:  123 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG-YSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIH------ETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL 320
[Close]
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTB_RAT (Actin, cytoplasmic 1 OS=Rattus norvegicus GN=Actb PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.244e-36
Identity = 84/205 (40.98%), Postives = 125/205 (60.98%), Query Frame = 3 
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEED-GARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N PAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF T+AE +I  D+ +KL  +A D       + + S  + SYELPDG++++I NER++ PEALF+PS +G     I       + T + + + D   R D+  N ++SG  T+YPG A+R+++E+ AL
Sbjct:  123 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG-YSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIH------ETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL 320
[Close]
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTB_RABIT (Actin, cytoplasmic 1 OS=Oryctolagus cuniculus GN=ACTB PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.244e-36
Identity = 84/205 (40.98%), Postives = 125/205 (60.98%), Query Frame = 3 
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEED-GARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N PAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF T+AE +I  D+ +KL  +A D       + + S  + SYELPDG++++I NER++ PEALF+PS +G     I       + T + + + D   R D+  N ++SG  T+YPG A+R+++E+ AL
Sbjct:  123 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG-YSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIH------ETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL 320
[Close]
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTB_PONAB (Actin, cytoplasmic 1 OS=Pongo abelii GN=ACTB PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.244e-36
Identity = 84/205 (40.98%), Postives = 125/205 (60.98%), Query Frame = 3 
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEED-GARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N PAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF T+AE +I  D+ +KL  +A D       + + S  + SYELPDG++++I NER++ PEALF+PS +G     I       + T + + + D   R D+  N ++SG  T+YPG A+R+++E+ AL
Sbjct:  123 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG-YSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIH------ETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL 320
[Close]
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTB_PIG (Actin, cytoplasmic 1 OS=Sus scrofa GN=ACTB PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 7.244e-36
Identity = 84/205 (40.98%), Postives = 125/205 (60.98%), Query Frame = 3 
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEED-GARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N PAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF T+AE +I  D+ +KL  +A D       + + S  + SYELPDG++++I NER++ PEALF+PS +G     I       + T + + + D   R D+  N ++SG  T+YPG A+R+++E+ AL
Sbjct:  123 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG-YSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIH------ETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL 320
[Close]
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTB_PANTR (Actin, cytoplasmic 1 OS=Pan troglodytes GN=ACTB PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.244e-36
Identity = 84/205 (40.98%), Postives = 125/205 (60.98%), Query Frame = 3 
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEED-GARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N PAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF T+AE +I  D+ +KL  +A D       + + S  + SYELPDG++++I NER++ PEALF+PS +G     I       + T + + + D   R D+  N ++SG  T+YPG A+R+++E+ AL
Sbjct:  123 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG-YSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIH------ETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL 320
[Close]
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTB_MOUSE (Actin, cytoplasmic 1 OS=Mus musculus GN=Actb PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.244e-36
Identity = 84/205 (40.98%), Postives = 125/205 (60.98%), Query Frame = 3 
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEED-GARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N PAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF T+AE +I  D+ +KL  +A D       + + S  + SYELPDG++++I NER++ PEALF+PS +G     I       + T + + + D   R D+  N ++SG  T+YPG A+R+++E+ AL
Sbjct:  123 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG-YSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIH------ETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL 320
[Close]
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTB_MESAU (Actin, cytoplasmic 1 OS=Mesocricetus auratus GN=ACTB PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.244e-36
Identity = 84/205 (40.98%), Postives = 125/205 (60.98%), Query Frame = 3 
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEED-GARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N PAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF T+AE +I  D+ +KL  +A D       + + S  + SYELPDG++++I NER++ PEALF+PS +G     I       + T + + + D   R D+  N ++SG  T+YPG A+R+++E+ AL
Sbjct:  123 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG-YSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIH------ETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL 320
The following BLAST results are available for this feature:
BLAST of CX300743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 420
Match NameE-valueIdentityDescription
ACTB_SPECI7.244e-3640.98Actin, cytoplasmic 1 OS=Spermophilus citellus GN=A... [more]
ACTB_SIGHI7.244e-3640.98Actin, cytoplasmic 1 OS=Sigmodon hispidus GN=ACTB ... [more]
ACTB_SHEEP7.244e-3640.98Actin, cytoplasmic 1 OS=Ovis aries GN=ACTB PE=2 SV... [more]
ACTB_RAT7.244e-3640.98Actin, cytoplasmic 1 OS=Rattus norvegicus GN=Actb ... [more]
ACTB_RABIT7.244e-3640.98Actin, cytoplasmic 1 OS=Oryctolagus cuniculus GN=A... [more]
ACTB_PONAB7.244e-3640.98Actin, cytoplasmic 1 OS=Pongo abelii GN=ACTB PE=2 ... [more]
ACTB_PIG7.244e-3640.98Actin, cytoplasmic 1 OS=Sus scrofa GN=ACTB PE=2 SV... [more]
ACTB_PANTR7.244e-3640.98Actin, cytoplasmic 1 OS=Pan troglodytes GN=ACTB PE... [more]
ACTB_MOUSE7.244e-3640.98Actin, cytoplasmic 1 OS=Mus musculus GN=Actb PE=1 ... [more]
ACTB_MESAU7.244e-3640.98Actin, cytoplasmic 1 OS=Mesocricetus auratus GN=AC... [more]

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Properties
Property NameValue
Genbank descriptionC08001G05SK PhyRootSw1 Citrus sinensis cDNA clone C08001G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300743 ID=CX300743; Name=CX300743; organism=Citrus sinensis; type=EST; length=596bp
TGATGTTCGAAACGTATAACGTACCAGCAATGTTTATAGAAGTACCGAAT
ATCCTAAATCAATACGCGTCAGGCACCAAAACTGGATTGACGGTGTGTTG
TGGTGATGGCGTGATGGTGACGCAAGCGATCAGCAACGGTTATGCGTTGC
CTAATACTATTTCGCGCAGCGATTTCGGTGGTCGGGATCTGAATCAGTAT
TTTATATCGACGATGTACCAACGCGGCGAGCGATCGTTTCTCACGTCTGC
CGAGTTTCAGATCGCTGGCGATGTCATTCAAAAATTGGGTTTGATCGCTC
CCGATGCTTCTTTAACGCATTCTTGTGGCAAACTAAGCTACGAGCTACCT
GATGGCGAGATACTATCGATACAGAACGAAAGATATCAAATACCTGAAGC
TTTATTCAGACCTTCGTTGATGGGATCGAGCTACGATTCGATTTCGGGCG
TCGCCGATCTCGTACAGCAGACCTTGTCACGTGTTCCTGAAGAGGACGGC
GCACGTGCTGATGTAGCGAAGAATATCATCGTATCGGGTGCGCCTACATT
ATATCCAGGTTTCGCAGAGCGTTTAGAACAAGAAGTCAAAGCATTG
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