CX300743

Overview
NameCX300743
Unique NameCX300743
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACT5_XENLA (Actin, cytoplasmic type 5 OS=Xenopus laevis PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.244e-36
Identity = 84/205 (40.98%), Postives = 125/205 (60.98%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEED-GARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N PAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF T+AE +I  D+ +KL  +A D       + + S  + SYELPDG++++I NER++ PEALF+PS +G     I       + T + + + D   R D+  N ++SG  T+YPG A+R+++E+ AL
Sbjct:  124 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG-YSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIH------ETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL 321          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACT3_DROME (Actin-57B OS=Drosophila melanogaster GN=Act57B PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.244e-36
Identity = 84/205 (40.98%), Postives = 128/205 (62.44%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD-------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N PAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF T+AE +I  D+ +KL  +A D       A+ + S  K SYELPDG++++I NER++ PE+LF+PS +G       G+ + V  ++ +   +   R D+  NI++SG  T+YPG A+R+++E+ +L
Sbjct:  124 MFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG-YSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEK-SYELPDGQVITIGNERFRCPESLFQPSFLGM---ESCGIHETVYNSIMKCDVD--IRKDLYANIVMSGGTTMYPGIADRMQKEITSL 321          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTC_BIOGL (Actin, cytoplasmic OS=Biomphalaria glabrata PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 9.460e-36
Identity = 81/204 (39.71%), Postives = 125/204 (61.27%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N PAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF T+AE +I  D+ +KL  +A D       + T S  + SYELPDG++++I NER++ PEA F+PS +G      +G+ +    ++ +   +   R D+  N ++SG  T++PG A+R+++E+ AL
Sbjct:  124 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERG-YSFTTTAEREIVRDIKEKLCYVALDFEQEMQTASTSSSLEKSYELPDGQVITIGNERFRCPEATFQPSFLGM---EAAGIHETTYNSIMKCDVD--IRKDLYANTVLSGGSTMFPGIADRMQKEITAL 321          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTB_ORYLA (Actin, cytoplasmic 1 OS=Oryzias latipes GN=actb PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 9.460e-36
Identity = 82/204 (40.20%), Postives = 125/204 (61.27%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N PAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF T+AE +I  D+ +KL  +A D       + + S  + SYELPDG++++I NER++ PEALF+PS +G       G+ +    ++ +   +   R D+  N ++SG  T+YPG A+R+++E+ AL
Sbjct:  123 MFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG-YSFTTTAEREIVRDIKEKLCYVALDFEQEMGTAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGM---ESCGIHETTYNSIMKCDVD--IRKDLYANTVLSGGTTMYPGIADRMQKEITAL 320          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACT3_SOLLC (Actin-52 (Fragment) OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 9.460e-36
Identity = 82/204 (40.20%), Postives = 126/204 (61.76%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N PAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  + +  + +RG  SF T+AE +I  DV +KL  IA D       + T S  + SYELPDG++++I +ER++ PE LF+PS++G      +G+ +    ++ +   +   R D+  NI++SG  T++PG A+R+ +E+ AL
Sbjct:  105 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIPRLDLAGRDLTDHLMKILTERG-YSFTTTAEREIVRDVKEKLSYIALDYEQEIETAKTSSSVEKSYELPDGQVITIGSERFRCPEVLFQPSMIGM---EAAGIHETTYNSIMKCDVD--IRKDLYGNIVLSGGTTMFPGIADRMSKEITAL 302          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACT3_BOMMO (Actin, cytoplasmic A3 OS=Bombyx mori PE=3 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 9.460e-36
Identity = 81/204 (39.71%), Postives = 125/204 (61.27%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N PAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF T+AE +I  D+ +KL  +A D       + + S  + SYELPDG++++I NER++ PEALF+PS +G      +G+ +    ++ +   +   R D+  N ++SG  T+YPG A+R+++E+  L
Sbjct:  124 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG-YSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGM---EANGIHETTYNSIMKCDVD--IRKDLYANTVLSGGTTMYPGIADRMQKEITRL 321          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACT2_ONCVO (Actin-2 OS=Onchocerca volvulus GN=act-2b PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 9.460e-36
Identity = 81/204 (39.71%), Postives = 126/204 (61.76%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N PAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF T+AE +I  D+ +KL  +A D       + + S  + SYELPDG+++++ NER++ PEALF+PS +G      +G+ +    ++ +   +   R D+  N ++SG  T+YPG A+R+++E+ AL
Sbjct:  124 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG-YSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNERFRCPEALFQPSFLGM---ESAGIHETTYNSIMKC--DIDIRKDLYANNVLSGGSTMYPGIADRMQKEITAL 321          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACT2_MOLOC (Actin, muscle-type OS=Molgula oculata PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 9.460e-36
Identity = 82/204 (40.20%), Postives = 126/204 (61.76%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+NVPAM++ +  +L+ YASG  TG+ +  GDGV     I  GYALP+ I R D  GRDL  Y +  + +RG  SF+T+AE +I  D+ +KL  +A D       + + S  + SYELPDG++++I NER++ PE +F+PS +G      SGV +    ++ +   +   R D+  N ++SG  T+YPG A+R+++E+ AL
Sbjct:  126 MFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERG-YSFVTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPETMFQPSFIGM---ESSGVHETTYNSIMKC--DIDIRKDLYANNVLSGGTTMYPGIADRMQKEITAL 323          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACT2_DROME (Actin-42A OS=Drosophila melanogaster GN=Act42A PE=1 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 9.460e-36
Identity = 81/204 (39.71%), Postives = 125/204 (61.27%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N PAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF T+AE +I  D+ +KL  +A D       + + S  + SYELPDG++++I NER++ PE+LF+PS +G       G+ +    ++ +   +   R D+  N ++SG  T+YPG A+R+++E+ AL
Sbjct:  124 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG-YSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGM---EACGIHETTYNSIMKCDVD--IRKDLYANTVLSGGTTMYPGIADRMQKEITAL 321          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACT2_CAEEL (Actin-2 OS=Caenorhabditis elegans GN=act-2 PE=2 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 9.460e-36
Identity = 81/204 (39.71%), Postives = 126/204 (61.76%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N PAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF T+AE +I  D+ +KL  +A D       + + S  + SYELPDG+++++ NER++ PEALF+PS +G      +G+ +    ++ +   +   R D+  N ++SG  T+YPG A+R+++E+ AL
Sbjct:  124 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG-YSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNERFRCPEALFQPSFLGM---ESAGIHETSYNSIMKC--DIDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL 321          
The following BLAST results are available for this feature:
BLAST of CX300743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 420
Match NameE-valueIdentityDescription
ACT5_XENLA7.244e-3640.98Actin, cytoplasmic type 5 OS=Xenopus laevis PE=3 S... [more]
ACT3_DROME7.244e-3640.98Actin-57B OS=Drosophila melanogaster GN=Act57B PE=... [more]
ACTC_BIOGL9.460e-3639.71Actin, cytoplasmic OS=Biomphalaria glabrata PE=2 S... [more]
ACTB_ORYLA9.460e-3640.20Actin, cytoplasmic 1 OS=Oryzias latipes GN=actb PE... [more]
ACT3_SOLLC9.460e-3640.20Actin-52 (Fragment) OS=Solanum lycopersicum PE=3 S... [more]
ACT3_BOMMO9.460e-3639.71Actin, cytoplasmic A3 OS=Bombyx mori PE=3 SV=3[more]
ACT2_ONCVO9.460e-3639.71Actin-2 OS=Onchocerca volvulus GN=act-2b PE=3 SV=1[more]
ACT2_MOLOC9.460e-3640.20Actin, muscle-type OS=Molgula oculata PE=3 SV=1[more]
ACT2_DROME9.460e-3639.71Actin-42A OS=Drosophila melanogaster GN=Act42A PE=... [more]
ACT2_CAEEL9.460e-3639.71Actin-2 OS=Caenorhabditis elegans GN=act-2 PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionC08001G05SK PhyRootSw1 Citrus sinensis cDNA clone C08001G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300743 ID=CX300743; Name=CX300743; organism=Citrus sinensis; type=EST; length=596bp
TGATGTTCGAAACGTATAACGTACCAGCAATGTTTATAGAAGTACCGAAT
ATCCTAAATCAATACGCGTCAGGCACCAAAACTGGATTGACGGTGTGTTG
TGGTGATGGCGTGATGGTGACGCAAGCGATCAGCAACGGTTATGCGTTGC
CTAATACTATTTCGCGCAGCGATTTCGGTGGTCGGGATCTGAATCAGTAT
TTTATATCGACGATGTACCAACGCGGCGAGCGATCGTTTCTCACGTCTGC
CGAGTTTCAGATCGCTGGCGATGTCATTCAAAAATTGGGTTTGATCGCTC
CCGATGCTTCTTTAACGCATTCTTGTGGCAAACTAAGCTACGAGCTACCT
GATGGCGAGATACTATCGATACAGAACGAAAGATATCAAATACCTGAAGC
TTTATTCAGACCTTCGTTGATGGGATCGAGCTACGATTCGATTTCGGGCG
TCGCCGATCTCGTACAGCAGACCTTGTCACGTGTTCCTGAAGAGGACGGC
GCACGTGCTGATGTAGCGAAGAATATCATCGTATCGGGTGCGCCTACATT
ATATCCAGGTTTCGCAGAGCGTTTAGAACAAGAAGTCAAAGCATTG
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