CX300743

Overview
NameCX300743
Unique NameCX300743
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACT_MESVI (Actin OS=Mesostigma viride PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.236e-35
Identity = 83/204 (40.69%), Postives = 123/204 (60.29%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+NVPAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF T+AE +I  D+ +KL  +A D       + T S  + SYELPDG++++I NER++ PE LF P  +G      +G+ +    ++ R   +   R D+  NI++SG  T+ PG A+R+ +E+ AL
Sbjct:  125 MFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG-YSFTTTAEREIVRDIKEKLAYVAIDYEAELATANTSSSIEKSYELPDGQVITIGNERFRCPEVLFNPGYVGM---ESAGIHETTYNSIMRCDVD--IRKDLYGNIVLSGGSTMXPGIADRMSKEITAL 322          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTC_XENLA (Actin, alpha cardiac muscle 1 OS=Xenopus laevis GN=actc1 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.236e-35
Identity = 81/204 (39.71%), Postives = 126/204 (61.76%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+NVPAM++ +  +L+ YASG  TG+ +  GDGV     I  GYALP+ I R D  GRDL  Y +  + +RG  SF+T+AE +I  D+ +KL  +A D       + + S  + SYELPDG++++I NER++ PE LF+PS +G      +G+ +    ++ +   +   R D+  N ++SG  T+YPG A+R+++E+ AL
Sbjct:  125 MFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIQRLDLAGRDLTDYLMKILTERG-YSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGM---ESAGIHETTYNSIMKC--DIDIRKDLYANNVLSGGTTMYPGIADRMQKEITAL 322          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTC_PISOC (Actin, cytoplasmic OS=Pisaster ochraceus PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.236e-35
Identity = 82/204 (40.20%), Postives = 125/204 (61.27%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N PAM++ +  +L+ YASG  TG+    GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF T+AE +I  D+ +KL  +A D       + + S  + SYELPDG++++I NER++ PEALF+PS +G      +G+ +    ++ +   +   R D+  N ++SG  T++PG A+R+++EV AL
Sbjct:  124 MFETFNTPAMYVAIQAVLSLYASGRTTGIVFDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG-YSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGM---ESAGIHETTYNSIMKCDVD--IRKDLYANTVLSGGSTMFPGIADRMQKEVTAL 321          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTB_SALSA (Actin, cytoplasmic 1 OS=Salmo salar GN=actb PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.236e-35
Identity = 81/204 (39.71%), Postives = 125/204 (61.27%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N PAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF T+AE +I  D+ +KL  +A D       + + S  + SYELPDG++++I NER++ PEALF+PS +G       G+ +    ++ +   +   R D+  N ++SG  T+YPG A+R+++E+ +L
Sbjct:  123 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG-YSFTTTAEREIVRDIKEKLCYVALDFEQEMGTAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGM---ESCGIHETTYNSIMKCDVD--IRKDLYANTVLSGGTTMYPGIADRMQKEITSL 320          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACT5_DIPDE (Actin-5 (Fragment) OS=Diphyllobothrium dendriticum GN=ACT5 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.236e-35
Identity = 81/204 (39.71%), Postives = 126/204 (61.76%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N PAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF T+AE +I  D+ +KL  +A D       + + S  + SYELPDG++++I NER++ PEALF+PS +G      +G+ +    ++ +   +   R D+  N ++SG  T+YPG ++R+++E+ AL
Sbjct:  119 MFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG-YSFTTTAEREIVRDIKEKLCYVALDFEQEMSNAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGM---ESAGIHETTYNSIMKCDVD--IRKDLYANTVLSGGSTMYPGISDRMQKEISAL 316          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACT5_CHICK (Actin, cytoplasmic type 5 OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.236e-35
Identity = 83/205 (40.49%), Postives = 125/205 (60.98%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEED-GARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N PAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF T+AE +I  D+ +KL  +A D       + + S  + SYELPDG++++I NER++ PEA+F+PS +G     I       + T + + + D   R D+  N ++SG  T+YPG A+R+++E+ AL
Sbjct:  124 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG-YSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEAIFQPSFLGMESCGIH------ETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL 321          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACT4_TOBAC (Actin-66 (Fragment) OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.236e-35
Identity = 83/204 (40.69%), Postives = 126/204 (61.76%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+NVPAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL    +  + +RG  SF TSAE +I  DV +KL  +A D       + + S  + SYELPDG++++I +ER++ PE LF+PSL+G      +G+ +    ++ +   +   R D+  NI++SG  T++PG A+R+ +E+ AL
Sbjct:  105 MFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDCLMKILTERG-YSFTTSAEREIVRDVKEKLAYVALDYEQELETAKSSSSVEKSYELPDGQVITIGSERFRCPEVLFQPSLVGM---EAAGIHETTYNSIMKCDVD--IRKDLYGNIVLSGGTTMFPGIADRMSKEITAL 302          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACT4_CAEEL (Actin-4 OS=Caenorhabditis elegans GN=act-4 PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.236e-35
Identity = 81/204 (39.71%), Postives = 126/204 (61.76%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N PAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF T+AE +I  D+ +KL  +A D       + + S  + SYELPDG+++++ NER++ PEALF+PS +G      +G+ +    ++ +   +   R D+  N ++SG  T+YPG A+R+++E+ AL
Sbjct:  124 MFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG-YSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNERFRCPEALFQPSFLGM---ESAGIHETSYNSIMKC--DIDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL 321          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACT4_ARTSX (Actin, clone 403 OS=Artemia sp. PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.236e-35
Identity = 81/204 (39.71%), Postives = 125/204 (61.27%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N PAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF T+AE +I  D+ +KL  +A D       + + +  + SYELPDG++++I NER++ PEALF+PS +G       G+ +    ++ +   +   R D+  N ++SG  T+YPG A+R+++E+ AL
Sbjct:  124 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG-YSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGM---ESCGIHETTYNSIMKCDVD--IRKDLYANTVLSGGTTMYPGIADRMQKEITAL 321          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACT3_SOLTU (Actin-58 OS=Solanum tuberosum GN=AC58 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.236e-35
Identity = 84/204 (41.18%), Postives = 125/204 (61.27%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N PAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  + +  + +RG  SF T+AE +I  DV +KL  IA D       S T S  + SYELPDG++++I  ER++ PE LF+PSL+G      +G+ +    ++ +   +   R D+  NI++SG  T++PG A+R+ +E+ AL
Sbjct:  125 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERG-YSFTTTAEREIVRDVKEKLSYIALDFEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSLIGM---EAAGIHETTYNSIMKCDVD--IRKDLYGNIVLSGGTTMFPGIADRMSKELTAL 322          
The following BLAST results are available for this feature:
BLAST of CX300743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 420
Match NameE-valueIdentityDescription
ACT_MESVI1.236e-3540.69Actin OS=Mesostigma viride PE=3 SV=1[more]
ACTC_XENLA1.236e-3539.71Actin, alpha cardiac muscle 1 OS=Xenopus laevis GN... [more]
ACTC_PISOC1.236e-3540.20Actin, cytoplasmic OS=Pisaster ochraceus PE=3 SV=1[more]
ACTB_SALSA1.236e-3539.71Actin, cytoplasmic 1 OS=Salmo salar GN=actb PE=2 S... [more]
ACT5_DIPDE1.236e-3539.71Actin-5 (Fragment) OS=Diphyllobothrium dendriticum... [more]
ACT5_CHICK1.236e-3540.49Actin, cytoplasmic type 5 OS=Gallus gallus PE=3 SV... [more]
ACT4_TOBAC1.236e-3540.69Actin-66 (Fragment) OS=Nicotiana tabacum PE=3 SV=1[more]
ACT4_CAEEL1.236e-3539.71Actin-4 OS=Caenorhabditis elegans GN=act-4 PE=2 SV... [more]
ACT4_ARTSX1.236e-3539.71Actin, clone 403 OS=Artemia sp. PE=2 SV=1[more]
ACT3_SOLTU1.236e-3541.18Actin-58 OS=Solanum tuberosum GN=AC58 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC08001G05SK PhyRootSw1 Citrus sinensis cDNA clone C08001G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300743 ID=CX300743; Name=CX300743; organism=Citrus sinensis; type=EST; length=596bp
TGATGTTCGAAACGTATAACGTACCAGCAATGTTTATAGAAGTACCGAAT
ATCCTAAATCAATACGCGTCAGGCACCAAAACTGGATTGACGGTGTGTTG
TGGTGATGGCGTGATGGTGACGCAAGCGATCAGCAACGGTTATGCGTTGC
CTAATACTATTTCGCGCAGCGATTTCGGTGGTCGGGATCTGAATCAGTAT
TTTATATCGACGATGTACCAACGCGGCGAGCGATCGTTTCTCACGTCTGC
CGAGTTTCAGATCGCTGGCGATGTCATTCAAAAATTGGGTTTGATCGCTC
CCGATGCTTCTTTAACGCATTCTTGTGGCAAACTAAGCTACGAGCTACCT
GATGGCGAGATACTATCGATACAGAACGAAAGATATCAAATACCTGAAGC
TTTATTCAGACCTTCGTTGATGGGATCGAGCTACGATTCGATTTCGGGCG
TCGCCGATCTCGTACAGCAGACCTTGTCACGTGTTCCTGAAGAGGACGGC
GCACGTGCTGATGTAGCGAAGAATATCATCGTATCGGGTGCGCCTACATT
ATATCCAGGTTTCGCAGAGCGTTTAGAACAAGAAGTCAAAGCATTG
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