CX300727

Overview
NameCX300727
Unique NameCX300727
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300727 vs. ExPASy Swiss-Prot
Match: SYW_SULAC (Tryptophanyl-tRNA synthetase OS=Sulfolobus acidocaldarius GN=trpS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.225e-17
Identity = 45/109 (41.28%), Postives = 64/109 (58.72%), Query Frame = 2
Query:    2 SASDPNSALYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAQVLTELVERHQVARAAVTDEVTL 325
            S+S P +A+Y+TD           YAFSGGQ +VELHRK G N ++D+  ++L  F E DD  +  I+++Y +G MLTGE+KQ L   L   +E H+  R    D V +
Sbjct:  256 SSSQPETAIYLTDDPKTVERKIMKYAFSGGQATVELHRKYGGNPDIDVAFQWLYMFFEPDDQRIRKIEEDYRSGAMLTGELKQILVDKLNAFLEEHREKREKAKDLVNV 364          
BLAST of CX300727 vs. ExPASy Swiss-Prot
Match: SYW_SULTO (Tryptophanyl-tRNA synthetase OS=Sulfolobus tokodaii GN=trpS PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 9.383e-17
Identity = 41/100 (41.00%), Postives = 65/100 (65.00%), Query Frame = 2
Query:    2 SASDPNSALYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAQVLTELVERHQVAR 298
            S+S P +A+Y+TD           YAFSGGQ ++ELHRK G N ++D+  ++L  F E DD +++ I+++Y +G +LTGE+KQ L + L + +E H+  R
Sbjct:  256 SSSQPETAIYLTDDPKTVERKIMKYAFSGGQPTIELHRKYGGNPDIDVSFQWLYMFFEPDDNKIKKIEEDYRSGALLTGELKQILIEKLNDFLEEHRQKR 355          
BLAST of CX300727 vs. ExPASy Swiss-Prot
Match: SYWC_SCHPO (Tryptophanyl-tRNA synthetase, cytoplasmic OS=Schizosaccharomyces pombe GN=wrs1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.225e-16
Identity = 45/108 (41.67%), Postives = 68/108 (62.96%), Query Frame = 2
Query:    2 SASDPNSALYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAQVLTELVERHQVARAAVTDEVTL 325
            SAS  +SA+++TD+          +AFSGG  ++E+HR+ G N +VD+  +YLSFFL+DD +L+ +   Y AG + TGE+K    ++L + V   Q AR+ V DE TL
Sbjct:  277 SASKDSSAIFMTDTPNKIKNKINRHAFSGGGATIEIHREKGGNPDVDVAYQYLSFFLDDDEKLKQLYNTYKAGTLSTGEMKGECIKLLQQFVSDFQAARSKV-DEATL 383          
BLAST of CX300727 vs. ExPASy Swiss-Prot
Match: SYW2_HALSA (Tryptophanyl-tRNA synthetase 2 OS=Halobacterium salinarium GN=trpS2 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.555e-14
Identity = 46/116 (39.66%), Postives = 65/116 (56.03%), Query Frame = 2
Query:    5 ASDPNSALYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAQVLTELVERHQVARAAVTDEVTLLHAITETE 349
            +S    ++ +TDS          +A++GG+ SVE HR  G     D+P +YLS F E DDAEL  I++EY AG +L+GE+K   A  +TE +  HQ  RAA+ D    L A   T+
Sbjct:  251 SSSAGVSIRLTDSPDTVREKVRTHAYTGGRASVEEHRAKGGVPAEDVPFQYLSAFFEPDDAELARIEREYRAGDLLSGELKDLAADRITEFLAAHQRRRAALGDVTEALDAFRLTD 366          
The following BLAST results are available for this feature:
BLAST of CX300727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
SYW_SULAC3.225e-1741.28Tryptophanyl-tRNA synthetase OS=Sulfolobus acidoca... [more]
SYW_SULTO9.383e-1741.00Tryptophanyl-tRNA synthetase OS=Sulfolobus tokodai... [more]
SYWC_SCHPO1.225e-1641.67Tryptophanyl-tRNA synthetase, cytoplasmic OS=Schiz... [more]
SYW2_HALSA2.555e-1439.66Tryptophanyl-tRNA synthetase 2 OS=Halobacterium sa... [more]

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Properties
Property NameValue
Genbank descriptionC08001F01SK PhyRootSw1 Citrus sinensis cDNA clone C08001F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300727 ID=CX300727; Name=CX300727; organism=Citrus sinensis; type=EST; length=585bp
GTCAGCTAGTGATCCTAATTCTGCCTTATATGTTACTGATTCTGCGAAGG
CTATTAAGAACAAGATAAACAAGTATGCATTTTCTGGCGGACAAGAAAGT
GTGGAATTACATAGAAAATTAGGGGCAAATCTTGAGGTAGATATACCAGT
AAAATATCTAAGTTTTTTCCTAGAGGATGATGCAGAACTAGAACACATTA
AAAAGGAGTATGGTGCAGGTGGCATGCTAACGGGGGAAGTTAAGCAACGC
CTTGCCCAAGTTTTGACTGAATTGGTGGAAAGACACCAGGTGGCTCGTGC
TGCTGTAACTGATGAGGTAACTCTCCTGCATGCAATAACCGAAACCGAAT
GAAGCTTTTGTAAATTATGTGACATTATTGATTCGATATAGGTGCATTCA
GTCACGTCAGATTGTTAGATTTCATGGTGGATTCAATAGAAAATACCAGT
TATTAACCTCAAAAGTATTCAGTAATATGAATGCATGTTTTCAATTGTTT
GCTTCTTTCAGATGGTCGATGCATTTATGGCAGTGAGACCCCTTCCCAAT
ATGTTCGACTAGTGTTGAGATGATGAACTTGGGCG
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