CX069906

Overview
NameCX069906
Unique NameCX069906
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069906 vs. ExPASy Swiss-Prot
Match: YCF1_LOTJA (Putative membrane protein ycf1 OS=Lotus japonicus GN=ycf1 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.289e-29
Identity = 98/301 (32.56%), Postives = 154/301 (51.16%), Query Frame = 1
Query:    1 PF-GSPQKRRSFFEPIFXXXXXXXXXXXXXSFIVLRDFKE------GKIKELSK--------------------------INLREIEKLRETQKNSIISKQ--MIHEPSIEISSMDWTKLSRTEKKMKDLTNRTSRIRNQIYKITKEKKKGSLTQETNISSNKPTYSVKILDPSKRIWRILKKRNARLIRKSYLFLKF---GIEKIYRNIFISTLTIPRINTKPFRESTRKQMKIIEKNIHNNEANPERINKTNKNRIISTIQXXXXXXXXXXXXXXCNLLSFSQ-SQAYVFYKLLQVPIL 786
            PF G P+ R SFF+PI               F++L+   E        +KE SK                             ++I++L + +KN  I+K   +I+E +I I +++ T  S TEKK+K +  +T +I  +I ++TKE K G L  E N +S K + + K L+  K+I +IL++RN +L  K Y F KF    ++K+Y +IF+  +++PRIN + F EST+   KII ++I+N + N E I+KTN++ II  I                N    S  SQAYVF+K+ Q+ +L
Sbjct:  893 PFSGYPRNRFSFFDPILKELKKKMKKLKNNFFLILKIVNERTKNFITTLKETSKRIIQSILKKVLFLNKKIKKLYNYLFLFRFKKIDELNQNKKNFPITKNNPIIYESTILIQAINKTNCSLTEKKIKAINAKTKKIIKKIERMTKENKGGFLISEINSNSKKTSSNTKGLELEKKILQILQRRNVQLTHKLYSFFKFLLNFMKKVYTDIFLCIVSVPRINVQFFLESTK---KIINQSIYNKKTNEEIIDKTNQS-IIHFISIINKSSNTKNTNSAANSYEVSALSQAYVFFKISQIQVL 1189          
BLAST of CX069906 vs. ExPASy Swiss-Prot
Match: YCF1_PHAVU (Putative membrane protein ycf1 OS=Phaseolus vulgaris GN=ycf1 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.058e-27
Identity = 99/293 (33.79%), Postives = 145/293 (49.49%), Query Frame = 1
Query:    1 PFGS-PQKRRSFFEPIFXXXXXXXXXXXXXSFIVLRDFKEGKIKELSKINLRE----IEKLRETQKNSII-------------------------SKQMIHEPSIEISSMDWTKLSRTEKKMKDLTNRTSRIRNQIYKITKE-KKKGSLTQETNISSNKPTYSVKILDPSKRIWRILKKRNARLIRKSYLFLKFGIEKIYRNIFISTLTIPRINTKPFRESTRKQMKIIEKNIHNNEANPERINKTNKNRIISTIQXXXXXXXXXXXXXXCNLLSFSQSQAYVFYKLLQVPIL 786
            PF S P+   SFF+PI              +F VL+ F E K K    I + +    I ++ E+ K SI+                         S+  I E +I I S+  T  +  +KK+KDL  +   +  +I K+ KE KK+G +  ETNI SNK     K ++  K+  +ILK+ + RL +KS+ FLKF I+KIY +IF+  + IP+I+ +PF EST+   K + K I+ NE N ER  KTN++ I    +                 +SF  SQAYVF+ LLQ  I+
Sbjct:  902 PFSSSPKNLFSFFDPILKELKKKTKQFEFFTFRVLKVFSE-KFKLFLNIVIEKAKWIINRIMESLKKSIVFLTKKRKEFFESLFIQWKPKKLDELSENKIDEATISIQSIKSTNFALKKKKIKDLNTKRKVVIKKIKKLKKEEKKRGLVISETNIDSNKTISDSKRIEFEKKNLQILKRIHIRLTKKSHSFLKFFIKKIYLDIFLYIICIPKIHIQPFIESTK---KFLNKWIYGNETNAERTYKTNQSIIPFISKLHKYFHNRNLNSHNYFDVSF-LSQAYVFFNLLQTRII 1189          
BLAST of CX069906 vs. ExPASy Swiss-Prot
Match: YCF1B_PIPCE (Putative membrane protein ycf1 C-terminal part OS=Piper cenocladum GN=ycf1 PE=5 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.021e-26
Identity = 86/230 (37.39%), Postives = 129/230 (56.09%), Query Frame = 1
Query:  121 KIKELSKINLREIEKLRETQKNSIISKQMIHEPSIEI-SSMDWTKLSRTEKKMKDLTNRTSRIRNQIYKITKEKKKGSLTQETNISSNKPTY--SVKILDPSKRIWRILKKRNARLIRKSYLFLKFGIEKIYRNIFISTLTIPRINTKPFRESTRKQMKIIEKNIHNNEANPERINKTNKNRI--ISTIQXXXXXXXXXXXXXXCNLLS----FSQSQAYVFYKLLQVPI 783
            K+     +  ++I +  E +KNSI+S ++ +E +I+  S++D   LS TEKK+KDL++ TS IRNQI ++ K+KK+  L  + N S+ +  +    K  +  K IW+I KKR+ RLIRK   FLK  I+KIY    + T++      K F EST+K    + K+I+N+E +   I++ N+N I  ISTI                N L+    FS SQAYVF KL Q  +
Sbjct:  656 KVNPTPLVRSQKIYESNENEKNSILSNKITYESNIQKKSTIDLKNLSLTEKKIKDLSDHTSIIRNQIERVAKDKKRIYLISDRNPSTGETGWYDKDKGRESKKGIWQIFKKRSTRLIRKWPYFLKSLIQKIYTETLLFTISSTDDYAKFFIESTKKS---LNKHIYNDEKDKRVIDEINQNTIEFISTINRSFSNITNIFNNSNKNSLTYFELFSLSQAYVFLKLSQTQV 882          
BLAST of CX069906 vs. ExPASy Swiss-Prot
Match: YCF1_HELAN (Putative membrane protein ycf1 OS=Helianthus annuus GN=ycf1 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.275e-26
Identity = 105/288 (36.46%), Postives = 142/288 (49.31%), Query Frame = 1
Query:    1 PFGSPQKRRSFFEPIFXXXXXXXXXXXXXSFIVLRDFKEGKIKELS----------------KINL---REIEKLRETQ--KNSIISKQMIHEPSIEISSMDWTKLSRTEKKMKDLTNRTSRIRNQIYKITKEKKKGSLTQETNISSNKPTYSVKILDPSKRIWRILKKRNARLIRKSYLFLKFGIEKIYRNIFISTLTIPRINTKPFRESTRKQMKIIEKNIHNNEANPERINKTNKNRI--ISTIQXXXXXXXXXXXXXXCNL---LSFSQSQAYVFYKLLQVPIL 786
            PFG P+K  SFFEPIF             +F + R  K+ K KE                  KI L   REI +  ET+  K+SIIS ++IHE   +      T  S+TE++MK   +R + IRNQI  + K KK  +L ++ N  +N         +    IW+ILK+ N  LI      +K  IEKIY +IF+  + + RI  + F EST+   KIIEK I NNE N E+INKT +N+I  IST                 N+   LS+  SQ YVF KL Q  ++
Sbjct:  842 PFGPPRKTPSFFEPIFKDIDYKVEIRKF-NFRIRRALKKIKKKEAKVFFFVKQILKELLKGKKIPLFITREIYESNETEREKDSIISNKIIHESLSQNRPKGLTNYSQTEEEMKHRIDRRNTIRNQIEIMKKNKKTVTLKKKINKKNNG--------EALPTIWKILKRNNIELI------VKIFIEKIYIDIFLCIINMRRIALQLFMESTK---KIIEKYIDNNETNKEKINKTKQNQIDFISTRTIKKAFDNLRNSKRKSNIFFELSY-LSQKYVFLKLSQTQVI 1110          
BLAST of CX069906 vs. ExPASy Swiss-Prot
Match: YCF1_EPIVI (Putative membrane protein ycf1 OS=Epifagus virginiana GN=ycf1 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.285e-25
Identity = 90/263 (34.22%), Postives = 138/263 (52.47%), Query Frame = 1
Query:    1 PFGSPQKRRSFFEPIFXXXXXXXXXXXXXSFIVLRDFKEGKI-KELSKINLREIEKLRETQKNSIISKQMIHEPSIEISSMDWTKLSRTEKKMKDLTNRTSRIRNQIYKITKEKKKGSLTQETNISSNKPTYSVKILDPSKRI--WRILKKRNARLIRKSYLFLKFGIEKIYRNIFISTLTIPRINTKPFRESTRKQMKIIEKNIHNNEANPERINKTNKNRIISTIQ-XXXXXXXXXXXXXXCNLLSFSQSQAYVFYKLLQV 777
            PF SP+K+ S F  I              +F+     K GK+ K+  K++   I+ +++ +K+ +IS Q+IHE   +  S+ W   S  E    DL ++TS+I NQ  +I+K+KK+ ++     +  NK  Y+ K     KR+  W+IL +++ R+I K   F KF IE+IY N F+S++ I +IN + F +  +   KII+K+I NNE   E IN  NKN I+   +                 L  +  SQAYVFYKL QV
Sbjct:  931 PFDSPRKQLSLFNFI--------------NFV-----KFGKLNKKFIKLSKETIKWVKKKKKDYLISNQIIHESLSKNPSLSWINYSFKEM---DLADQTSKILNQTERISKDKKQVTIKIFNILCENKINYNTK-----KRLEKWKILIRKSERIIIKLLFFFKFFIERIYTNFFLSSINILKINKEIFIKLIK---KIIDKSIFNNERKQELINTKNKNPILFISKLLYNISNSKKNSYTFYGLDLYYVSQAYVFYKLSQV 1163          
BLAST of CX069906 vs. ExPASy Swiss-Prot
Match: YCF1_LACSA (Putative membrane protein ycf1 OS=Lactuca sativa GN=ycf1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.319e-25
Identity = 101/287 (35.19%), Postives = 136/287 (47.39%), Query Frame = 1
Query:    1 PFGSPQKRRSFFEPIFXXXXXXXXXXXXXSFIVLRDFKE-------------GKIKELSKINL------REIEKLRETQ--KNSIISKQMIHEPSIEISSMDWTKLSRTEKKMKDLTNRTSRIRNQIYKITKEKKKGSLTQETNISSNKPTYSVKILDPSKRIWRILKKRNARLIRKSYLFLKFGIEKIYRNIFISTLTIPRINTKPFRESTRKQMKIIEKNIHNNEANPERINKTNKNRI----ISTIQXXXXXXXXXXXXXXCNLLSFSQSQAYVFYKLLQVPIL 786
            PFG P+K  SFFEPIF             +F V R FK+              KIKEL K N       REI +  ETQ  K+SIIS Q+IHE   +I S  WT  S+ E++MK   +R   IRN+I  + K K                   +   + S++I +ILK +N  L+      +KF IEKIY  IF+  + + RI  + F +ST+K +   +K I+NNE N ERINKT +N+I      TI+                      SQ YVF+KL Q  I+
Sbjct:  845 PFGPPRKTPSFFEPIFKDIDYKVEIRKL-NFRVRRIFKKIKKKEAKAFFFIKQKIKELLKGNKIPLFLPREIYESSETQTEKDSIISNQIIHESLSQIRSTGWTNYSQAEEEMKHRIDRRKTIRNEIEIMKKNK-------------------INNAESSQKILKILKIKNIELL------VKFFIEKIYIEIFLCIINMRRIPLQLFIQSTKKIID-NDKYINNNETNQERINKTKQNKIDFILSMTIKRAFDNLRNSKRKSDIFFDLSYLSQKYVFFKLSQTQII 1104          
BLAST of CX069906 vs. ExPASy Swiss-Prot
Match: YCF1_CUSRE (Putative membrane protein ycf1 OS=Cuscuta reflexa GN=ycf1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.799e-22
Identity = 85/266 (31.95%), Postives = 134/266 (50.38%), Query Frame = 1
Query:    1 PFGSPQKRRSFFEPIFXXXXXXXXXXXXXSFIVLRDFKEGKIKELSKINLREIEKLRETQKNSIISKQMIHEPSIEISSMDWTKLSRTEKKMKDLTNRTSRIRNQIYKITKEKKKGSLTQETNISSNKPTYSVKILDPSKRIWRILKKR--NARLIRKSYLFLKFGIEKIYRNIFISTLTIPRINTKPFRESTRKQMKIIEKNIHNNEANPER--INKTNKNRIISTIQXXXXXXXXXXXXXXCNLLSFSQSQAYVFYKLLQVPIL 786
            PFG P+K  SFFEP+                         K +  SK+ +   ++  + +K+  IS Q+I+E   +I  +     S   +KM+++ +RTS I+ +I ++T+EKK+  +T E  I   K +Y + +   +K I++ +K +    RLI K + F K   ++IY NIF+ T+ I RI T+ F EST+   K+I K I N E N +R  INK  KN+     +              C+L +   SQAYVFYK+ Q  +L
Sbjct:  869 PFGHPRKTPSFFEPVLQELDKKIVNINI------------KARIFSKVKINLFKRFSK-EKDFQISNQIINESFQQIEEIPGCTNSSLIEKMQNMAHRTSTIKKEIERVTEEKKR--VTLERYICFYKRSYRLAL---AKNIFKKVKVKVTKNRLICKFFFFKKLFNQRIYNNIFLETIYICRITTQLFLESTK---KLIYKYIFNYERNKKRIDINKETKNKFNLISKLKTYNHCKKNSYLSCDLSNL--SQAYVFYKIPQTGVL 1111          
BLAST of CX069906 vs. ExPASy Swiss-Prot
Match: YCF1_DAUCA (Putative membrane protein ycf1 OS=Daucus carota GN=ycf1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.182e-20
Identity = 101/309 (32.69%), Postives = 138/309 (44.66%), Query Frame = 1
Query:    4 FGSPQKRRSFFEPIFXXXXXXXXXXXXXSFIVLR-----------DFKEGKI---------------KELSKIN------LREIEKLRETQKNS--IISKQMIHEPSIEISSMDWTKLSRTEKKMKDLTNRTSRIRNQIYKITKE-----KKKGSLTQET-NISSNKPTYSVKILDPSKRIWRILKKRNARLIRKSYLFLKFGIEKIYRNIFISTLTIPRINTKPFRESTR----KQMKI----IEKNIHNNEANPERINKTNKNRIISTIQXXXXXXXXXXXXXXCNLLSFSQSQAYVFYKLLQVPIL 786
            FGS   + SFF+PI              +  VLR           D KE K                KEL KI+      L+++ +  ET K    II  Q IH+  I+I S D    S  +KK+K+LT+RTS IR +   + KE     KK+GS  + + N     P   +KIL         +K+R+ RLI K YLF+   I++IY +IF+  + I RI+T+   ES      K + I      K  +NN+ N E I K  +   ISTI+                    S SQAYVFYKL Q PI+
Sbjct:  894 FGSIPPKPSFFKPILKELKKKMQKTKNNNLKVLRVLKERTKDFLQDSKEPKEVIIKNVLFLFIKRIKKELFKIHPTRLFILKKVYESGETNKKKDYIIRNQQIHDSFIKIKSTDNKNDSLRDKKIKNLTDRTSTIRTKTKGLMKEKNSNAKKRGSPNKTSFNRKKKSPNILLKILK--------IKRRSTRLIYKFYLFITIFIKRIYIDIFVCIIHIARISTQLLLESINFCFDKYIYIYNNKTNKTNYNNKTNQE-IKKKKEINFISTIKSALYNIQNSKRNSRLFFDLSSLSQAYVFYKLSQTPII 1193          
BLAST of CX069906 vs. ExPASy Swiss-Prot
Match: YCF1_CUSEX (Putative membrane protein ycf1 OS=Cuscuta exaltata GN=ycf1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.080e-18
Identity = 82/265 (30.94%), Postives = 131/265 (49.43%), Query Frame = 1
Query:    1 PFGSPQKRRSFFEPIFXXXXXXXXXXXXXSFIVLRDFKEGKIKELSKINL-REIEKLRETQKNSIISKQMIHEPSIEISSMDWTKLSRTEKKMKDLTNRTSRIRNQIYKITKEKKKGSLTQETNISSNKPTYSVKILDPSKRIWRILKKRNARLIRKSYLFLKFGIEKIYRNIFISTLTIPRINTKPFRESTRKQMKIIEKNIHNNEANPER--INKTNKNRIISTIQXXXXXXXXXXXXXXCNLLSFSQSQAYVFYKLLQVPIL 786
            PFG P+K   FFEP+                       + +I    KINL + + K  + Q    I KQ+++E   +I  +     S   +KM+++++RT  I+ +I ++T++KKK  +T E  IS+ K +Y + +   SK I +++K     LI K   F K   +++Y +IF+ T+ I R+ T+ F EST+   K I K+I  NE   +R  INK  KN+I    +              C+  +   SQAYVFYK+ Q  +L
Sbjct:  808 PFGHPRKTPFFFEPVLQELDKKIVNI------------KARIFSKVKINLFKRVSKENDFQ----IRKQIMNESFRQIEEIPSCTNSSLIEKMRNMSDRTRTIKKKIERMTEDKKK--VTLELYISTYKRSYRLAL---SKTICKMVKV----LIWKFSYFQKLLNQRVYNDIFLYTIYICRMTTQLFLESTK---KFISKSILKNERTKKRININKETKNKIHFLSKLKTSKNCKKNLDLSCDFSNL--SQAYVFYKISQTGVL 1042          
BLAST of CX069906 vs. ExPASy Swiss-Prot
Match: YCF1_PELHO (Putative membrane protein ycf1 OS=Pelargonium hortorum GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.968e-15
Identity = 83/278 (29.86%), Postives = 127/278 (45.68%), Query Frame = 1
Query:    1 PFGSPQKRRSFFEPIFXXXXXXXXXXXXXSFI---VLRDFKEGKIKELSKINLREIEKLRETQKNSIISKQMIHEPSIEISSMDWTKLSRTEKKMKDL-TNRTSRIRNQIYKITKEKKKGSLTQETNISSNKPTYSVKILDPSKRIWRILKKRNARLIRKSYLFLKFGIEKIYRNIFISTLTIPRINTKPFRESTRKQ--MKIIE------KNIHNNEANPERI-----NKTNKNRIISTIQXXXXXXXXXXXXXXCNLLSF---SQSQAYVFYKLLQ 774
            PFG+ +K   FF+ +F             + +   + +  K+G +K   K  LR+  +L   QK S  SK +      + +++     S+  KK K+   ++T  I N+I ++ KEKKK     +T+ISS K +   K  +  +R+ +ILK+R AR IRKS +F K+ IE IY  I         +  +   E  +K+  +K++       K    N+   + I      K  KNR ISTI+                 L F   S SQAYVFYKL Q
Sbjct: 1258 PFGTARKPYPFFKTVFEELKKKKASQELKNLLTSGIRKLQKKGFLKFKKKGFLRK--RLLAFQKKSFQSKLLKGVKVKKRTNLKKGPQSKLTKKKKERKVDKTRAIINEIERVLKEKKKRLFIIQTSISSTKTSSHSKTSEALRRLSKILKRRKARFIRKSTIFRKWIIEWIYVKILFDLKNRFDLKKRFLDEMNKKKSCLKMVAQFFFQFKKKRKNKKIDKAIKGINKKKRKKNRFISTIKKHSFNMRNSQISKSQKTLVFDLSSLSQAYVFYKLSQ 1533          
The following BLAST results are available for this feature:
BLAST of CX069906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
YCF1_LOTJA1.289e-2932.56Putative membrane protein ycf1 OS=Lotus japonicus ... [more]
YCF1_PHAVU2.058e-2733.79Putative membrane protein ycf1 OS=Phaseolus vulgar... [more]
YCF1B_PIPCE1.021e-2637.39Putative membrane protein ycf1 C-terminal part OS=... [more]
YCF1_HELAN2.275e-2636.46Putative membrane protein ycf1 OS=Helianthus annuu... [more]
YCF1_EPIVI3.285e-2534.22Putative membrane protein ycf1 OS=Epifagus virgini... [more]
YCF1_LACSA7.319e-2535.19Putative membrane protein ycf1 OS=Lactuca sativa G... [more]
YCF1_CUSRE5.799e-2231.95Putative membrane protein ycf1 OS=Cuscuta reflexa ... [more]
YCF1_DAUCA3.182e-2032.69Putative membrane protein ycf1 OS=Daucus carota GN... [more]
YCF1_CUSEX5.080e-1830.94Putative membrane protein ycf1 OS=Cuscuta exaltata... [more]
YCF1_PELHO8.968e-1529.86Putative membrane protein ycf1 OS=Pelargonium hort... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13F01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13F01-K1-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069906 ID=CX069906; Name=CX069906; organism=Citrus sinensis; type=EST; length=786bp
CCGTTCGGTTCTCCCCAAAAACGACGTTCCTTTTTTGAACCCATTTTTAA
AGAACTAAAAAAAAAAATTCGAAAATTGAAAACTAAGTCTTTTATAGTTT
TAAGGGATTTTAAAGAAGGCAAAATAAAAGAACTTTCAAAAATAAACTTG
AGAGAAATCGAGAAATTGAGGGAAACTCAAAAAAATTCGATAATCAGTAA
GCAGATGATTCACGAACCGTCTATTGAAATTTCATCTATGGATTGGACGA
AATTATCCCGGACTGAAAAAAAAATGAAAGATCTGACTAATAGAACAAGC
AGAATCAGAAATCAAATATATAAAATTACAAAAGAAAAGAAAAAAGGATC
GCTAACTCAAGAAACAAATATTAGTTCGAACAAACCAACGTATTCTGTTA
AAATATTAGACCCATCAAAAAGGATTTGGCGGATATTAAAAAAAAGAAAC
GCTCGATTAATCCGTAAATCCTATTTGTTTCTAAAATTTGGCATTGAAAA
GATATACAGAAATATTTTTATATCTACCCTTACTATTCCAAGAATCAATA
CAAAACCTTTTCGTGAATCAACAAGAAAACAAATGAAAATTATTGAGAAA
AACATCCACAATAATGAAGCAAATCCCGAAAGAATTAATAAAACAAATAA
AAATAGAATTATTTCGACTATCCAAAAATTGATTTCTAAGACTAGTAATA
AGAATTCAAAGATTTCTTGTAATTTATTGTCTTTTTCACAATCACAAGCA
TATGTATTTTACAAATTATTACAAGTCCCAATTTTG
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