CX069906

Overview
NameCX069906
Unique NameCX069906
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX069906 vs. ExPASy Swiss-Prot
Match: YCF1_JASNU (Putative membrane protein ycf1 OS=Jasminum nudiflorum GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.451e-14
Identity = 66/217 (30.41%), Postives = 103/217 (47.47%), Query Frame = 1 
Query:  148 LREIEKLRETQKNSIISKQMIHEPSIEISSMDWTKLSRTEKKMKDLTNRTSRIRNQIYKITKEKKKGSLTQETNISSNKPTYSVKILDPSKRIWRILKKRNARLIRKSYLFLKFGIEKIYRNIFISTLTIPRINTKPFR-----ESTRKQMKIIEKNIHNNEANPERINKTNKNRIISTIQXXXXXXXXXXXXXXCNLLSFSQSQAYVFYKLLQVPI 783
            L++I++L + +++ I S QMI E   +ISS   T   +   KM+DLTNR ++ RN+I +I KEKKK   + +   S+            +KR+ RI      RLIRK  ++LK  I++IY  IF S + I R++ K FR     +  RK +      I+  + +    N    + I   +                       SQAYVFYKL ++ +
Sbjct: 1044 LKKIKELVKKERDPITSNQMIPESFTQISSPSSTNSEKKRNKMQDLTNRANKARNEIERIRKEKKKKKRSLKKTSSN------------AKRLQRI----KDRLIRKLPVYLKLFIQRIYTGIFFSIINIRRMSQK-FRNKFIPDQERKDILPFIYTINKIKESLYTNNSEENSHIFYDLSYL--------------------SQAYVFYKLSEIQL 1223
The following BLAST results are available for this feature:
BLAST of CX069906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
YCF1_JASNU4.451e-1430.41Putative membrane protein ycf1 OS=Jasminum nudiflo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_13F01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13F01-K1-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069906 ID=CX069906; Name=CX069906; organism=Citrus sinensis; type=EST; length=786bp
CCGTTCGGTTCTCCCCAAAAACGACGTTCCTTTTTTGAACCCATTTTTAA
AGAACTAAAAAAAAAAATTCGAAAATTGAAAACTAAGTCTTTTATAGTTT
TAAGGGATTTTAAAGAAGGCAAAATAAAAGAACTTTCAAAAATAAACTTG
AGAGAAATCGAGAAATTGAGGGAAACTCAAAAAAATTCGATAATCAGTAA
GCAGATGATTCACGAACCGTCTATTGAAATTTCATCTATGGATTGGACGA
AATTATCCCGGACTGAAAAAAAAATGAAAGATCTGACTAATAGAACAAGC
AGAATCAGAAATCAAATATATAAAATTACAAAAGAAAAGAAAAAAGGATC
GCTAACTCAAGAAACAAATATTAGTTCGAACAAACCAACGTATTCTGTTA
AAATATTAGACCCATCAAAAAGGATTTGGCGGATATTAAAAAAAAGAAAC
GCTCGATTAATCCGTAAATCCTATTTGTTTCTAAAATTTGGCATTGAAAA
GATATACAGAAATATTTTTATATCTACCCTTACTATTCCAAGAATCAATA
CAAAACCTTTTCGTGAATCAACAAGAAAACAAATGAAAATTATTGAGAAA
AACATCCACAATAATGAAGCAAATCCCGAAAGAATTAATAAAACAAATAA
AAATAGAATTATTTCGACTATCCAAAAATTGATTTCTAAGACTAGTAATA
AGAATTCAAAGATTTCTTGTAATTTATTGTCTTTTTCACAATCACAAGCA
TATGTATTTTACAAATTATTACAAGTCCCAATTTTG
back to top