CX069843
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_CITSI (Putative membrane protein ycf1 OS=Citrus sinensis GN=ycf1-A PE=3 SV=1) HSP 1 Score: 499.204 bits (1284), Expect = 1.010e-140 Identity = 240/254 (94.49%), Postives = 240/254 (94.49%), Query Frame = 1 Query: 1 ERINKTNKNRIISTIQXXXXXXXXXXXXXXCNLLSFSQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFDW 762 ERINKTNKNRIISTIQ CNLLSFSQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFDW Sbjct: 1120 ERINKTNKNRIISTIQKLISKTSNKNSKISCNLLSFSQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFDW 1373
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_VITVI (Putative membrane protein ycf1 OS=Vitis vinifera GN=ycf1 PE=3 SV=1) HSP 1 Score: 270.011 bits (689), Expect = 9.968e-72 Identity = 152/264 (57.58%), Postives = 177/264 (67.05%), Query Frame = 1 Query: 1 ERINKTNKNRI--ISTIQXXXXXXXXXXXXXXCNLLSFSQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFE--KHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYD-LSRIKWARLVPQEWRNRANQHCMAQN--KDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDME---KFLYRKYFDW 762 +RI K N+ +I IS I+ C+L S SQ AYVFYKL Q ++N Y LR VLQY+GTSLFLKNE KD+F H IF+Y+LRHK L N G N K+ L GHYQY LS I W+RLVPQ+WRNR NQHC+AQN KDL K D +K+ L HY KQ+ +EAD L NQK NFKKHYRYDLLSYK +NYEDK DSYI S +QVNN ++ NYN K K ML I INNY+GEDDIM +E K RKYFDW Sbjct: 1176 KRIGKPNQKKIHFISIIKRSVSSISNKSSQIFCDLSSLSQ--AYVFYKLSQTQVINLYKLRSVLQYNGTSLFLKNERKDYFGFGAHEIFHYELRHKKLRNSGMNQWKNWLRGHYQYKYLSPIIWSRLVPQKWRNRVNQHCVAQNQNKDLSKWDLSQKDQLIHYNKQNDYEADSLTNQKENFKKHYRYDLLSYKYINYEDKNDSYIYGSPLQVNNNQDISYNYNTHKRKFFDMLEGIPINNYLGEDDIMYIEYIKKNPDRKYFDW 1437
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_PLAOC (Putative membrane protein ycf1 OS=Platanus occidentalis GN=ycf1 PE=3 SV=1) HSP 1 Score: 247.284 bits (630), Expect = 6.919e-65 Identity = 131/258 (50.78%), Postives = 169/258 (65.50%), Query Frame = 1 Query: 1 ERINKTNKNRI--ISTIQXXXXXXXXXXXXXXCNLLSFSQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQY--DLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFDW 762 E I++ N+ +I ISTI+ C+L S SQ AYVFYKL Q ++N Y+LR VL+YH SLFLK+ IKD+F GIF+++ RHK L N G N K+ L GHYQY DLS+ +WARLVPQ+W+NR NQ QNKD K SYEK+ L HY+KQ+ + +LL N+K KKHY YDLLS+K +NYE+KKD YI RS +QVN E NY K++ +LG I I +Y+GED I++ +K RKYFDW Sbjct: 1190 EEIDEINQKKIHFISTIKKSLFHISNNNSQIFCDLSSLSQ--AYVFYKLSQTKVINKYHLRSVLEYHERSLFLKDRIKDYFRTQGIFHFESRHKKLRNSGMNDWKNWLKGHYQYQYDLSQTRWARLVPQKWQNRVNQRRTTQNKDSKKLGSYEKDQLIHYQKQNDYAVELLSNKKEKLKKHYGYDLLSHKYINYENKKDLYIYRSPLQVNEGREITYNYTTHKLESFCVLGGIPIRDYLGEDYIIETDKNPDRKYFDW 1445
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_POPAL (Putative membrane protein ycf1 OS=Populus alba GN=ycf1 PE=3 SV=1) HSP 1 Score: 245.358 bits (625), Expect = 2.629e-64 Identity = 131/258 (50.78%), Postives = 165/258 (63.95%), Query Frame = 1 Query: 1 ERINKTNKNRIISTIQXXXXXXXXXXXXXXCNLLS--FSQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQY--DLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFDW 762 +RI+KTN+N I I + S SQAYVFYKL QV ++N Y LR VLQYHG SLFLKNEIKD+F G F ++L+ N N K+ + +YQY DLS+I+W+ L+ Q+WRNR NQ M QNKDL K + Y+K+ L HYEKQ+ FE D L NQK NFKK+YRY++L YKS+NYEDKKDS I Q+NNK+E + NY K KL M G I +N ++ EDDI+D EK +RKY DW Sbjct: 1153 KRIDKTNQNTPIHFISIIKKALNYSNFNKNSKIFYNITSLSQAYVFYKLSQVQVINLYKLRSVLQYHGASLFLKNEIKDYFGVQGRFQFKLKDTNFRNSVMNEWKNWVRSNYQYKYDLSQIRWSSLISQKWRNRMNQQHMIQNKDLNKWNLYDKDQLIHYEKQNNFEVDSLSNQKDNFKKYYRYNILLYKSINYEDKKDSSIYELPFQLNNKQELFYNYKIDKRKLFDMSGGIPVNKHLTEDDIIDTEKSSHRKYLDW 1410
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_BUXMI (Putative membrane protein ycf1 OS=Buxus microphylla GN=ycf1-A PE=3 SV=1) HSP 1 Score: 245.358 bits (625), Expect = 2.629e-64 Identity = 135/256 (52.73%), Postives = 163/256 (63.67%), Query Frame = 1 Query: 1 ERINKTNKN--RIISTIQXXXXXXXXXXXXXXCNLLSFSQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFDW 762 E I++TNKN ISTI+ C+L S SQ AYVFYKL Q ++N YNLR VLQYHG SLF K I+ F GIFN Q +HK L NFG N K+ L HYQYDLS+IKW+RLV Q+WRNR NQ QNKD K SYEK+ L HYE +H +E L +QK N KK+YRYDLLSY ++YE+KK SYI S +QV E NYN K + +LG I I++Y+GED I+D E+ RKYFDW Sbjct: 1150 EGIDETNKNTTHFISTIKRPLSNNNNKNSKIFCDLSSLSQ--AYVFYKLSQTQVINKYNLRSVLQYHGASLFPKERIRYFCGTRGIFNSQSKHKRLRNFGMNEWKNWLRDHYQYDLSQIKWSRLVLQKWRNRVNQRRTVQNKDSKKLGSYEKDQLIHYETEHDYEVYSLPSQKENLKKNYRYDLLSYNYIHYENKKGSYIHVSPLQVTKGREIPYNYNIHKPEFFYVLGGIPISDYLGEDYIIDTEENPDRKYFDW 1403
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_POPTR (Putative membrane protein ycf1 OS=Populus trichocarpa GN=ycf1-A PE=3 SV=1) HSP 1 Score: 244.202 bits (622), Expect = 5.857e-64 Identity = 130/258 (50.39%), Postives = 163/258 (63.18%), Query Frame = 1 Query: 1 ERINKTNKNRIISTIQXXXXXXXXXXXXXXCNLLS--FSQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQY--DLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFDW 762 +RI KTN+N +I I + S SQAYVFYKL QV ++N Y LR V QYHG SLFLKNEIKD+F G F ++L+ N N K+ + YQY DLS+I+W+ L+ Q+WRNR NQ M QNKDL K + Y+K+ L HYEKQ+ FE D L NQK NFKK+YRY++L YKS+NYEDKKDS I Q+NNK+E + NY K KL M G I +N ++ EDDI+D EK +RKY DW Sbjct: 1155 KRIEKTNQNTLIHFISIIKKALNYSNFNKNSKIFYNITSLSQAYVFYKLSQVQVINLYKLRSVFQYHGASLFLKNEIKDYFGVQGRFQFKLKDTNFRNSVMNEWKNWVRSTYQYKYDLSQIRWSSLISQKWRNRMNQQHMIQNKDLNKWNLYDKDQLIHYEKQNNFEVDSLSNQKDNFKKYYRYNILLYKSINYEDKKDSSIYELPFQLNNKQELFYNYKIDKRKLFDMSGGIPVNKHLTEDDIIDTEKSSHRKYLDW 1412
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_TOBAC (Putative membrane protein ycf1 OS=Nicotiana tabacum GN=ycf1 PE=3 SV=2) HSP 1 Score: 243.047 bits (619), Expect = 1.305e-63 Identity = 129/254 (50.79%), Postives = 167/254 (65.75%), Query Frame = 1 Query: 1 ERINKTNKNRIISTIQXXXXXXXXXXXXXXCNLLSFSQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFDW 762 E+IN K ISTI+ +L SQ AYVFYKL Q ++N LR VLQY+ TS FLK +IKD+F GIF+ +L+HK L ++ N K+ L HYQYDLS+I+W+RL+PQ+WRNR NQ CMAQN++L K +SYEK+ L HY+K++ E L NQK NF+K YRYDLL+YKS+NYE K DS+I R QVN E SN N K L MLG++ INNY+ + +I+ +E+ L RKYFDW Sbjct: 1194 EKINNQKKIHFISTIKKSLYNISKKNSHIFFDLSYLSQ--AYVFYKLSQPQVINLSKLRSVLQYNRTSFFLKTKIKDYFRTLGIFHSELKHKKLQSYRINQWKNWLRRHYQYDLSQIRWSRLMPQKWRNRVNQGCMAQNRNLNKWNSYEKDQLIHYKKENDSELYSLANQKDNFQKCYRYDLLAYKSINYEKKNDSFISRLPFQVNKNLEISSNSNTSKHNLFDMLGNLHINNYLRKGNILYIERNLDRKYFDW 1445
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_NICSY (Putative membrane protein ycf1 OS=Nicotiana sylvestris GN=ycf1-A PE=3 SV=1) HSP 1 Score: 243.047 bits (619), Expect = 1.305e-63 Identity = 129/254 (50.79%), Postives = 167/254 (65.75%), Query Frame = 1 Query: 1 ERINKTNKNRIISTIQXXXXXXXXXXXXXXCNLLSFSQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFDW 762 E+IN K ISTI+ +L SQ AYVFYKL Q ++N LR VLQY+ TS FLK +IKD+F GIF+ +L+HK L ++ N K+ L HYQYDLS+I+W+RL+PQ+WRNR NQ CMAQN++L K +SYEK+ L HY+K++ E L NQK NF+K YRYDLL+YKS+NYE K DS+I R QVN E SN N K L MLG++ INNY+ + +I+ +E+ L RKYFDW Sbjct: 1194 EKINNQKKIHFISTIKKSLYNISKKNSHIFFDLSYLSQ--AYVFYKLSQPQVINLSKLRSVLQYNRTSFFLKTKIKDYFRTLGIFHSELKHKKLQSYRINQWKNWLRRHYQYDLSQIRWSRLMPQKWRNRVNQGCMAQNRNLNKWNSYEKDQLIHYKKENDSELYSLANQKDNFQKCYRYDLLAYKSINYEKKNDSFISRLPFQVNKNLEISSNSNTSKHNLFDMLGNLHINNYLRKGNILYIERNLDRKYFDW 1445
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_GOSHI (Putative membrane protein ycf1 OS=Gossypium hirsutum GN=ycf1 PE=3 SV=1) HSP 1 Score: 242.276 bits (617), Expect = 2.226e-63 Identity = 136/279 (48.75%), Postives = 171/279 (61.29%), Query Frame = 1 Query: 1 ERINKTNKN--RIISTIQXXXXXXXXXXXXXX-----CNLLSFSQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRH------KPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQ-----------KSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMD-MEKFLYRKYFDW 762 ERINKT KN ISTI+ C+L S SQ AYVFYKL Q +++FY +P+LQYHGTSLFLKNEIKD+FE+ G+ + +LRH K +W+ G N K+ L YQYDL + +W +L P +WRNR NQH +AQNK L K DS EK L HYEK++ F+A+ L Q KSNFKKHY YD LSYKS+NY+DK+D Y S QVN +EE +YN K L I I+NY+GE DI+D M F +RK+F+W Sbjct: 1165 ERINKTTKNTTHFISTIKTSLSSLSNISIRNKNEKAFCDLSSLSQ--AYVFYKLSQTQVISFYKFKPILQYHGTSLFLKNEIKDYFEERGVSHSRLRHHYGLRQKIVWHSGMNEWKNWLRSRYQYDLVQNRWLKLGPGQWRNRVNQHYLAQNKHLTKWDSDEKERLIHYEKKNDFQANSLLTQEYKLNQEQKYKKSNFKKHYGYDFLSYKSINYQDKRDPYAYGSPFQVNKREESSYHYNMDKQNFFDTLRDIPIHNYLGEGDILDAMGNFSHRKFFNW 1441
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_GOSBA (Putative membrane protein ycf1 OS=Gossypium barbadense GN=ycf1 PE=3 SV=1) HSP 1 Score: 238.81 bits (608), Expect = 2.461e-62 Identity = 135/279 (48.39%), Postives = 170/279 (60.93%), Query Frame = 1 Query: 1 ERINKTNKN--RIISTIQXXXXXXXXXXXXXX-----CNLLSFSQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRH------KPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQ-----------KSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMD-MEKFLYRKYFDW 762 ERINKT KN ISTI+ C+L S SQ AYVFYKL Q +++FY +P+LQYHGTSLFLKNEIKD+FE+ G+ + +LRH K +W+ G N K+ L YQYDL + +W +L P +WRN NQH +AQNK L K DS EK L HYEK++ F+A+ L Q KSNFKKHY YD LSYKS+NY+DK+D Y S QVN +EE +YN K L I I+NY+GE DI+D M F +RK+F+W Sbjct: 1162 ERINKTTKNTTHFISTIKTSLSSLSNISIRNKNEKAFCDLSSLSQ--AYVFYKLSQTQVISFYKFKPILQYHGTSLFLKNEIKDYFEERGVSHSRLRHHYGLRQKIVWHSGMNEWKNWLRSRYQYDLVQNRWLKLGPGQWRNGVNQHYLAQNKHLPKWDSDEKERLIHYEKKNDFQANSLLTQEYKLNQEQKYKKSNFKKHYGYDFLSYKSINYQDKRDPYAYGSPFQVNKREESSYHYNMDKQNFFDTLRDIPIHNYLGEGDILDAMGNFSHRKFFNW 1438 The following BLAST results are available for this feature:
BLAST of CX069843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 66
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Sequences
The
following sequences are available for this feature:
EST sequence >CX069843 ID=CX069843; Name=CX069843; organism=Citrus sinensis; type=EST; length=763bpback to top |