DN621538

Overview
NameDN621538
Unique NameDN621538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_HAHCH (3-isopropylmalate dehydrogenase OS=Hahella chejuensis (strain KCTC 2396) GN=leuB PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.964e-54
Identity = 101/179 (56.42%), Postives = 135/179 (75.42%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            + +LPGDGIGPE++A A+NVL +  +   +   F E  +GG+A+D  GVP PEETLA A+ +DA+LLGA+GG KWDK +  ++PE GLL +R GL++FANLRPA + PQL ++S+L+ EV  G+D+++VRELTGGIYFGKPRG    E+GE  GFNT VY+  E+ RI RVAFE A+KR
Sbjct:    5 VLILPGDGIGPEIVAQARNVLDVVNNKFSLGLTFTEGLVGGAAIDTTGVPFPEETLATAEAADAILLGAVGGPKWDKLDMAIRPEKGLLGLRSGLELFANLRPAILYPQLAEASSLRPEVVAGLDILIVRELTGGIYFGKPRGVRTLENGEREGFNTYVYSESEIRRIGRVAFEAAQKR 183          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_SYNSC (3-isopropylmalate dehydrogenase OS=Synechococcus sp. (strain CC9605) GN=leuB PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.836e-53
Identity = 104/182 (57.14%), Postives = 137/182 (75.27%), Query Frame = 1
Query:  127 RYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            ++ + LLPGDGIGPE+ AVA+ +L++     G   +F+E P+GGSA+D  G PLP  TL A K +DAVLL AIG   +D   +  +PETGLL +R G+++FANLRP  ++P L+D+S+LK+EV EGVDLMVVRELTGGIYFG+P+G   TE G+E GFNT  Y+A EVDRIA+VAFE A++R
Sbjct:    3 QHRVVLLPGDGIGPEITAVARQLLEVVSRRHGFSLSFEEQPIGGSAIDATGEPLPASTLDACKAADAVLLAAIGSPCFDSLPREKRPETGLLGLRAGMELFANLRPVKIVPALIDASSLKREVIEGVDLMVVRELTGGIYFGQPKGRIETE-GDERGFNTMTYSASEVDRIAKVAFEIAQER 183          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_SPIPL (3-isopropylmalate dehydrogenase OS=Spirulina platensis GN=leuB PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.836e-53
Identity = 106/183 (57.92%), Postives = 130/183 (71.04%), Query Frame = 1
Query:  124 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            + Y ITLL GDGIGPE++AVA +VLK  G    + F F+E  MGG A+D  G PLPEE+L A + SDAVLL AIGGYKWD   +  +PETGLL +R GL +FAN       P ++D+S+LK+EV EGVD+MVVRELTGGIYFG+P+G   TE G+  G NT  Y   E+DRI RV FETA+KR
Sbjct:    3 QNYRITLLSGDGIGPEIMAVAVDVLKAVGKQLDLNFEFKEALMGGVAIDATGEPLPEESLQACRDSDAVLLAAIGGYKWDNLPRPERPETGLLALRAGLGLFANRARLLFCPHVLDASSLKREVVEGVDIMVVRELTGGIYFGQPKGIFETETGKNEGSNTMAYGESEIDRIGRVGFETAKKR 185          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_SYNS9 (3-isopropylmalate dehydrogenase OS=Synechococcus sp. (strain CC9902) GN=leuB PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 6.318e-53
Identity = 102/182 (56.04%), Postives = 134/182 (73.63%), Query Frame = 1
Query:  127 RYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            +Y + LLPGDGIGPE+ AVA+ +L +     G +  F+E P+GGSA+D  G PLP  TL A + +DAVLL AIG  ++D   +  +PETGLL +R GL++FANLRP  ++P L+ +S+LK+EV EGVDLMVVRELTGGIYFG+P+G  +   G+E GFNT  Y+A EVDRIA+VAFE A +R
Sbjct:    3 QYRVVLLPGDGIGPEITAVARQLLDVVAQRHGFQLMFEEQPIGGSAIDATGEPLPASTLTACRSADAVLLAAIGSPRFDSLPREKRPETGLLGLRSGLELFANLRPVKIVPALIGASSLKQEVIEGVDLMVVRELTGGIYFGQPKG-RIEADGDERGFNTMTYSASEVDRIAKVAFEIAGER 183          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_PROMM (3-isopropylmalate dehydrogenase OS=Prochlorococcus marinus (strain MIT 9313) GN=leuB PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.556e-51
Identity = 104/183 (56.83%), Postives = 132/183 (72.13%), Query Frame = 1
Query:  124 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            +++ I LLPGDGIGPE+ AVAK +L   G   G +  F++ P+GG A+D  G PLP  TL A + SDAVLL AIG  ++D   +  +PETGLL +R GLK+FANLRP T+LP L+D+S+LK  V +GVDLMVVRELTGGIYFG+P+G  +   G+E  FNT  Y+  EVDRIA+VAFE AR R
Sbjct:    2 RQHRIVLLPGDGIGPEITAVAKLLLDALGHQHGFKLNFEQHPIGGVAIDASGSPLPASTLEACQASDAVLLAAIGSPRFDALPREQRPETGLLSLRAGLKLFANLRPVTILPALIDASSLKANVIKGVDLMVVRELTGGIYFGQPKG-RIEADGDERAFNTMTYSRTEVDRIAKVAFELARDR 183          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_THICR (3-isopropylmalate dehydrogenase OS=Thiomicrospira crunogena (strain XCL-2) GN=leuB PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.833e-50
Identity = 96/179 (53.63%), Postives = 129/179 (72.07%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            + +LPGDGIGPE+ A A  VL+     + ++ +     +GG+A D  GVPL EETL  AKQSDA+LLGA+GGY+W+  +  ++PE GLL +R  L++FANLRPA + PQL D+STLK EV  G+D+++VRELTGGIYFG+PRG    ++GE  G+NT VY+  E+ RIA VAF+ A KR
Sbjct:    5 VLILPGDGIGPEITAEAVKVLEALQQKDNLDISMTHDLVGGAAYDQHGVPLAEETLEKAKQSDAILLGAVGGYQWESLDISVRPEKGLLALRSNLELFANLRPAYLFPQLADASTLKPEVVAGLDILIVRELTGGIYFGQPRGIRTLDNGERQGYNTYVYSESEIKRIAHVAFDAAMKR 183          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_SYNPX (3-isopropylmalate dehydrogenase OS=Synechococcus sp. (strain WH8102) GN=leuB PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.833e-50
Identity = 100/182 (54.95%), Postives = 130/182 (71.43%), Query Frame = 1
Query:  127 RYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            ++ + LLPGDGIGPE+ AVA+ +L+      G E  F    +GGSA+D  G PLP  TL A K +DAVLL AIG  ++D   +  +PETGLL +R G+ +FANLRP  ++P L+ +S+L+ EV EGVDLMVVRELTGGIYFG+P+G  +   GEE GFNT  Y++ EVDRIARVAF+ AR+R
Sbjct:    3 QHRVVLLPGDGIGPEITAVARQLLEAVSQRHGFELCFDGQLIGGSAIDACGEPLPASTLDACKAADAVLLAAIGSPRFDNLPRDKRPETGLLGLRSGMALFANLRPVKIVPALIGASSLRPEVIEGVDLMVVRELTGGIYFGQPKG-RIQADGEERGFNTMTYSSSEVDRIARVAFDLARER 183          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_SACD2 (3-isopropylmalate dehydrogenase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=leuB PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 6.538e-50
Identity = 94/179 (52.51%), Postives = 132/179 (73.74%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            I LLPGDGIGPE++A AK VL+   +   +   F+E  +GG A+D+ GVPL + TL   K +DAVL+G++GG KWD  + +++PE GLL+IR  + ++ANLRPA + PQL D+S+LK E+  G+D+++VRELTGGIYFG+PRG  + ++GE  G+NT VYA +E++RI R AFE A KR
Sbjct:    5 IVLLPGDGIGPEIVAEAKKVLEAVDAKFKLGLKFEEDLIGGCAIDVHGVPLAQSTLDRCKAADAVLMGSVGGPKWDALDSNIRPEKGLLKIRYEMGLYANLRPAILYPQLADASSLKPEIVSGLDILIVRELTGGIYFGEPRGIRLLDNGERQGYNTYVYAEHEIERIGRTAFEMAMKR 183          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_NITOC (3-isopropylmalate dehydrogenase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=leuB PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.228e-49
Identity = 101/179 (56.42%), Postives = 125/179 (69.83%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            I LL GDGIGPE+IA A  VL   G    ++   +   +GG+A ++ G PLP ETLA A+ SDA+LLGA+GG +W+  +  ++PE GLL IR  L +FANLRPA + PQLV +STLK EV  G+DLM+VRELTGGIYFG+PRG    EHGE  GFNT VY   E+ RIA+VAF  A KR
Sbjct:    5 IALLAGDGIGPEIIAEAVKVLAALGEHGELDVVLESGLIGGAAYEVTGTPLPAETLALAQDSDAILLGAVGGPQWETLDIKVRPEKGLLGIRSALGLFANLRPAILYPQLVGASTLKPEVVSGLDLMIVRELTGGIYFGQPRGVCRLEHGERQGFNTLVYKESEIRRIAQVAFTIAMKR 183          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_GLOVI (3-isopropylmalate dehydrogenase OS=Gloeobacter violaceus GN=leuB PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.228e-49
Identity = 98/182 (53.85%), Postives = 124/182 (68.13%), Query Frame = 1
Query:  127 RYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            RY I +LPGDGIG E++ V   +L+ A       F F+E P+GG+A+D  G PLP  TL   K SDAV LGA+GG +WD      +PE  LL +R GL +FANLRPA +LPQLV +S LK EV EGVD++VVRELTGG+YFG P+G    + G   G NT  Y+A+E++RI RVAFE AR+R
Sbjct:    4 RYKIAVLPGDGIGTEIVQVGVAMLEAAARRFDFAFDFEEAPIGGAAIDATGEPLPAATLELCKASDAVFLGAVGGPQWDTLPSDKRPEKALLGLRAGLGLFANLRPARILPQLVAASALKPEVVEGVDILVVRELTGGLYFGIPKGIFPEKKGGRRGVNTMSYSAFEIERIGRVAFEAARER 185          
The following BLAST results are available for this feature:
BLAST of DN621538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 292
Match NameE-valueIdentityDescription
LEU3_HAHCH1.964e-5456.423-isopropylmalate dehydrogenase OS=Hahella chejuen... [more]
LEU3_SYNSC2.836e-5357.143-isopropylmalate dehydrogenase OS=Synechococcus s... [more]
LEU3_SPIPL2.836e-5357.923-isopropylmalate dehydrogenase OS=Spirulina plate... [more]
LEU3_SYNS96.318e-5356.043-isopropylmalate dehydrogenase OS=Synechococcus s... [more]
LEU3_PROMM1.556e-5156.833-isopropylmalate dehydrogenase OS=Prochlorococcus... [more]
LEU3_THICR3.833e-5053.633-isopropylmalate dehydrogenase OS=Thiomicrospira ... [more]
LEU3_SYNPX3.833e-5054.953-isopropylmalate dehydrogenase OS=Synechococcus s... [more]
LEU3_SACD26.538e-5052.513-isopropylmalate dehydrogenase OS=Saccharophagus ... [more]
LEU3_NITOC7.228e-4956.423-isopropylmalate dehydrogenase OS=Nitrosococcus o... [more]
LEU3_GLOVI7.228e-4953.853-isopropylmalate dehydrogenase OS=Gloeobacter vio... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_06N15_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621538 ID=DN621538; Name=DN621538; organism=Citrus sinensis; type=EST; length=674bp
GCGGCGTCAGTGCAGCTGAATGCGAAGCTACTTGGACCCGCGTTTATTGT
TAAACCCGCAACCAAACACTTTCTTAAACCGGCAAGAATCAGGTGCGCCG
CTGCTGCCACCGCACCACCCACCAAACGGTACAGCATCACTCTACTCCCC
GGCGATGGCATCGGCCCCGAAGTCATCGCCGTCGCCAAAAACGTCCTCAA
GCTCGCTGGCTCTCTCGAAGGGATTGAATTTGCATTCCAAGAGATGCCAA
TGGGGGGATCAGCCTTGGATTTGGTTGGAGTTCCGTTACCTGAGGAGACA
CTTGCAGCAGCGAAGCAATCTGATGCAGTTCTACTTGGCGCAATTGGAGG
GTATAAATGGGATAAAAATGAGAAACATTTGAAGCCAGAGACTGGATTGC
TTCAGATTCGAGAAGGTCTTAAAGTCTTTGCAAATTTGAGGCCAGCAACT
GTTTTACCACAGTTAGTGGACTCTTCCACTTTGAAGAAGGAGGTTGCTGA
AGGTGTTGACCTTATGGTTGTAAGGGAGCTCACCGGAGGTATTTATTTTG
GAAAGCCCAGGGGCTATGGTGTTACTGAACATGGTGAGGAGATTGGCTTC
AATACAGAGGTTTATGCTGCCTACGAGGTGGATCGTATTGCTCGTGTTGC
TTTTGAGACTGCTCGGAAACGTCA
back to top