DN621538

Overview
NameDN621538
Unique NameDN621538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_PROMA (3-isopropylmalate dehydrogenase OS=Prochlorococcus marinus GN=leuB PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.441e-49
Identity = 99/184 (53.80%), Postives = 126/184 (68.48%), Query Frame = 1
Query:  130 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAF---ETARKR 672
            + ITLL GDGIGPE+  VAK +L        I F  +E P GG A++L G PLPE+TL + K SDAVLL AIG  K+D   + L+PETGLL +R GL +FAN+RP  +   L+ SS+LK E+ + VDL+VVRELTGGIYFG+P+G   TE   E  FNT  Y+ YE+DRIA++AF   ET RK+
Sbjct:    4 HKITLLTGDGIGPEISIVAKKILAALSEKHSITFTIEEKPFGGQAIELTGKPLPEDTLNSCKASDAVLLAAIGDPKYDDLPRDLRPETGLLNLRAGLNLFANIRPIKIRQALISSSSLKSEIIKDVDLVVVRELTGGIYFGQPKGRISTEEAGERAFNTMTYSDYEIDRIAKIAFDLSETRRKK 187          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_PSEPK (3-isopropylmalate dehydrogenase OS=Pseudomonas putida (strain KT2440) GN=leuB PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.610e-48
Identity = 98/179 (54.75%), Postives = 129/179 (72.07%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            I +LPGDGIGPE++A A  VL+LA     + F+     +GG+A+D  GVPL +ETL  A+++DAVLLGA+GG KWDK E+ ++PE GLL+IR  L +FANLRPA + PQL D+S+LK E+  G+D+++VRELTGGIYFG PRG    E GE   ++T  Y+  EV RIARV F+ AR R
Sbjct:    5 ILILPGDGIGPEIMAEAVKVLELANDKFQLGFSLAHDVIGGAAIDKHGVPLADETLERARKADAVLLGAVGGPKWDKIERDIRPERGLLKIRSQLGLFANLRPAILYPQLADASSLKPEIVSGLDILIVRELTGGIYFGAPRGQRELEGGERQAYDTLPYSESEVRRIARVGFDMARVR 183          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_CHRSD (3-isopropylmalate dehydrogenase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=leuB PE=3 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 4.685e-48
Identity = 98/180 (54.44%), Postives = 131/180 (72.78%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLK-PETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            I +LPGDGIGPE+   A  +L       G+E + +E  +GG+ +D  GVPLP+ETLA+AK +DAVLLGA+GG +WDK E   K PE GLL +R+ L +F NLRPA + PQL  +S+LK E+  G+D+M+VRELTGGIYFG+PRG    + GE +G+NT +YA +E++RI RVAFE AR+R
Sbjct:    5 ILVLPGDGIGPEITREAVKILNACREA-GLEASIEEGLVGGAGIDAHGVPLPDETLASAKAADAVLLGAVGGPQWDKIEDLSKRPEKGLLGLRKNLNLFGNLRPALLYPQLASASSLKPEIVAGLDIMIVRELTGGIYFGQPRGIEERD-GERVGYNTYIYAEHEIERIGRVAFEMARER 182          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_PSEF5 (3-isopropylmalate dehydrogenase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=leuB PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.119e-48
Identity = 96/179 (53.63%), Postives = 127/179 (70.95%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            I +LPGDGIGPE++A A  VL+LA     + F      +GG+A+D  GVPL +ETL  A+ +DAVLLGA+GG KWDK E+ ++PE GLL+IR  L +F NLRPA + PQL D+S+LK E+  G+D+++VRELTGGIYFG PRG    E+GE   ++T  Y+  E+ RIARV F+ AR R
Sbjct:    5 ILILPGDGIGPEIMAEAVKVLELANDKYSLGFELSHDVIGGAAIDKHGVPLADETLDRARAADAVLLGAVGGPKWDKIERDIRPERGLLKIRAQLGLFGNLRPAILYPQLADASSLKPEIVSGLDILIVRELTGGIYFGAPRGTRELENGERQSYDTLPYSESEIRRIARVGFDMARVR 183          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_PSEPF (3-isopropylmalate dehydrogenase OS=Pseudomonas fluorescens (strain Pf0-1) GN=leuB PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 7.992e-48
Identity = 96/179 (53.63%), Postives = 127/179 (70.95%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            I +LPGDGIGPE++A A  VL+LA     + F      +GG+A+D  GVPL +ETL  A+ +DAVLLGA+GG KWD  E+ ++PE GLL+IR  L +F NLRPA + PQL D+S+LK E+A G+D+++VRELTGGIYFG PRG    E+GE   ++T  Y+  E+ RIARV F+ AR R
Sbjct:    5 ILILPGDGIGPEIMAEAVKVLELANEKYSLGFELSHDVIGGAAIDKHGVPLADETLDRARAADAVLLGAVGGPKWDTIERDIRPERGLLKIRAQLGLFGNLRPAILYPQLADASSLKPEIAAGLDILIVRELTGGIYFGAPRGTRTLENGERQSYDTLPYSESEIRRIARVGFDMARVR 183          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_PSEAE (3-isopropylmalate dehydrogenase OS=Pseudomonas aeruginosa GN=leuB PE=3 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 7.992e-48
Identity = 97/179 (54.19%), Postives = 130/179 (72.63%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            I +LPGDGIGPE++A A  VL+LA     + F   E  +GG+A+D  GVPL ++TL  A+Q+DAVLLGA+GG KWD+ E+ ++PE GLL+IR  L +FANLRPA + PQL  +S+LK EV  G+D+++VRELTGGIYFG+PR   V E+GE   ++T  Y+  E+ RIARV F+ AR R
Sbjct:    5 ILVLPGDGIGPEIMAEAVKVLELANDRFQLGFELAEDVIGGAAIDKHGVPLADQTLQRARQADAVLLGAVGGPKWDRIERDIRPERGLLKIRSQLGLFANLRPAILYPQLAAASSLKPEVVAGLDILIVRELTGGIYFGQPREQRVLENGERQAYDTLPYSESEIRRIARVGFDMARVR 183          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_CHLTE (3-isopropylmalate dehydrogenase OS=Chlorobium tepidum GN=leuB PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 7.992e-48
Identity = 102/181 (56.35%), Postives = 122/181 (67.40%), Query Frame = 1
Query:  130 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            Y I  +PGDGIGPEV+A A +VL       G E + +E   GG++ D+ G  L +ETL A K  DAVLLGA+GGYKW+      KPE  LL+IR+ L +FANLRPA V   LV SSTLK EV +G D MV RELTGGIYFG+PRGY  T      G+NT VY  YEV+RIAR+AFE A+KR
Sbjct:    3 YKIVSIPGDGIGPEVVAGALDVLNAVAKKHGFEVSVEEHLFGGASYDVHGSMLTDETLEACKNCDAVLLGAVGGYKWENLPHDKKPEAALLKIRKELGLFANLRPARVYDALVASSTLKTEVVQGTDFMVFRELTGGIYFGQPRGYDETR-----GWNTMVYERYEVERIARLAFEYAQKR 178          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_METCA (3-isopropylmalate dehydrogenase OS=Methylococcus capsulatus GN=leuB PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.044e-47
Identity = 95/179 (53.07%), Postives = 125/179 (69.83%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            I +LPGDGIGPE++A A  VL    S  G+    +   +GG+A D  G P P+ETL   + +D++LLGA+GG KW+  +  L+PE GLL +R  L++F+NLRPA + PQLV +STLK EV  G+D+M+VRELTGGIYFGKPRG  + E GE  G+NT VY+  E+ RIA  AF+ ARKR
Sbjct:    5 IAVLPGDGIGPEIVAEALKVLDCLRSDFGLAVETEHALIGGAAYDAHGTPFPKETLELCRAADSILLGAVGGPKWEPLDYSLRPERGLLGLRSELELFSNLRPAVLYPQLVSASTLKPEVVAGLDIMIVRELTGGIYFGKPRGRRINEDGEREGYNTLVYSESEIRRIAHSAFQIARKR 183          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_PROMT (3-isopropylmalate dehydrogenase OS=Prochlorococcus marinus (strain NATL2A) GN=leuB PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.780e-47
Identity = 95/183 (51.91%), Postives = 125/183 (68.31%), Query Frame = 1
Query:  124 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            K Y ITLLPGDGIGPE+  V   +L L     G E  F+EMP GGSA+D  G+P P+ TL   K SDAVLL AIG  K+D+  +  +PETGLL +R  L +FAN+RP  ++P L  +S+LK++  + VDL+VVRELT GIYFG+P+G   T+ GE   FNT  Y + EV+RIA +AF+ A++R
Sbjct:    2 KSYKITLLPGDGIGPEITNVTHKILDLVSRKFGFEIKFKEMPFGGSAIDSDGIPFPDRTLQECKNSDAVLLAAIGDPKYDELPREKRPETGLLNLRSSLDLFANIRPVKIIPSLTKASSLKEDFVKEVDLVVVRELTSGIYFGEPKGRIKTDKGER-AFNTMTYTSEEVNRIAEIAFKLAKQR 183          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_WOLSU (3-isopropylmalate dehydrogenase OS=Wolinella succinogenes GN=leuB PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.325e-47
Identity = 92/183 (50.27%), Postives = 130/183 (71.04%), Query Frame = 1
Query:  124 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            K+Y I ++ GDGIGPE++  AK VL       G E ++ +  MGG A+D  GVPLP+ET+    ++DAVL GAIGG KWD   + L+PE+GLL++R+ L++FANLRP  V  +L+++STLK+ V +GVD++VVREL GGIYFG+P+G      G++  FNT VY+  E++RIA VAF+ A +R
Sbjct:    2 KKYEIAIIKGDGIGPEIVDEAKKVLDAISYSHGFELSYHDYLMGGIAVDRAGVPLPDETIEGCLRADAVLFGAIGGEKWDSLPRELRPESGLLKLRKSLEIFANLRPTVVYDELIEASTLKESVIKGVDILVVRELIGGIYFGEPKG----REGDK-AFNTMVYSVPEIERIAHVAFKAAMRR 179          
The following BLAST results are available for this feature:
BLAST of DN621538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 292
Match NameE-valueIdentityDescription
LEU3_PROMA9.441e-4953.803-isopropylmalate dehydrogenase OS=Prochlorococcus... [more]
LEU3_PSEPK1.610e-4854.753-isopropylmalate dehydrogenase OS=Pseudomonas put... [more]
LEU3_CHRSD4.685e-4854.443-isopropylmalate dehydrogenase OS=Chromohalobacte... [more]
LEU3_PSEF56.119e-4853.633-isopropylmalate dehydrogenase OS=Pseudomonas flu... [more]
LEU3_PSEPF7.992e-4853.633-isopropylmalate dehydrogenase OS=Pseudomonas flu... [more]
LEU3_PSEAE7.992e-4854.193-isopropylmalate dehydrogenase OS=Pseudomonas aer... [more]
LEU3_CHLTE7.992e-4856.353-isopropylmalate dehydrogenase OS=Chlorobium tepi... [more]
LEU3_METCA1.044e-4753.073-isopropylmalate dehydrogenase OS=Methylococcus c... [more]
LEU3_PROMT1.780e-4751.913-isopropylmalate dehydrogenase OS=Prochlorococcus... [more]
LEU3_WOLSU2.325e-4750.273-isopropylmalate dehydrogenase OS=Wolinella succi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06N15_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621538 ID=DN621538; Name=DN621538; organism=Citrus sinensis; type=EST; length=674bp
GCGGCGTCAGTGCAGCTGAATGCGAAGCTACTTGGACCCGCGTTTATTGT
TAAACCCGCAACCAAACACTTTCTTAAACCGGCAAGAATCAGGTGCGCCG
CTGCTGCCACCGCACCACCCACCAAACGGTACAGCATCACTCTACTCCCC
GGCGATGGCATCGGCCCCGAAGTCATCGCCGTCGCCAAAAACGTCCTCAA
GCTCGCTGGCTCTCTCGAAGGGATTGAATTTGCATTCCAAGAGATGCCAA
TGGGGGGATCAGCCTTGGATTTGGTTGGAGTTCCGTTACCTGAGGAGACA
CTTGCAGCAGCGAAGCAATCTGATGCAGTTCTACTTGGCGCAATTGGAGG
GTATAAATGGGATAAAAATGAGAAACATTTGAAGCCAGAGACTGGATTGC
TTCAGATTCGAGAAGGTCTTAAAGTCTTTGCAAATTTGAGGCCAGCAACT
GTTTTACCACAGTTAGTGGACTCTTCCACTTTGAAGAAGGAGGTTGCTGA
AGGTGTTGACCTTATGGTTGTAAGGGAGCTCACCGGAGGTATTTATTTTG
GAAAGCCCAGGGGCTATGGTGTTACTGAACATGGTGAGGAGATTGGCTTC
AATACAGAGGTTTATGCTGCCTACGAGGTGGATCGTATTGCTCGTGTTGC
TTTTGAGACTGCTCGGAAACGTCA
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