DN621538

Overview
NameDN621538
Unique NameDN621538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_MAGSA (3-isopropylmalate dehydrogenase OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=leuB PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.037e-47
Identity = 97/179 (54.19%), Postives = 121/179 (67.60%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            + +LPGDGIG EV+A  + ++   G    IEF   E  +GG+A D+ G P P ETL AA  +DAVLLGA+GG KWD      KPE GLL IR+ + +FANLRPATVL  L D+STLK EV  G+D+M++RELTGG+YFG+PRG      G   G+NT VY   E+ RI RVAF+ ARKR
Sbjct:    6 LLILPGDGIGVEVMAQVRRIIDWMGRKRKIEFEITEGLLGGAAYDVHGTPYPAETLEAALAADAVLLGAVGGPKWDDLPFDKKPERGLLGIRKDMGLFANLRPATVLEALADASTLKAEVVSGLDIMILRELTGGLYFGQPRGIDTLPDGTRKGYNTLVYTTPEIQRIGRVAFDLARKR 184          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_CHRVO (3-isopropylmalate dehydrogenase OS=Chromobacterium violaceum GN=leuB PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.037e-47
Identity = 97/179 (54.19%), Postives = 128/179 (71.51%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            I +LPGDGIGPE+IA A+ VL++    +G++   +  P+GG+A D  GVP PE T   A+++DAVLLGA+GG  +DK ++ L+PE GLL IR+ L +FANLRPA + P+L ++STLK EV  G+D+M+VRELTG IYFG+PRG  V E GE   +NT  Y+  EV RIA VAF  A KR
Sbjct:    3 IAILPGDGIGPEIIAQAERVLEVLRR-DGLKIETEHAPLGGAAYDQYGVPYPEATQKLAREADAVLLGAVGGPAYDKLDRPLRPERGLLAIRKDLNLFANLRPAILYPELANASTLKPEVVAGLDIMIVRELTGDIYFGQPRGIAVNELGEREAYNTMRYSESEVRRIAHVAFGIAMKR 180          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_ACIAD (3-isopropylmalate dehydrogenase OS=Acinetobacter sp. (strain ADP1) GN=leuB PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.966e-47
Identity = 92/179 (51.40%), Postives = 126/179 (70.39%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            I +L GDGIGPE++  A+ VL        +   ++   +GGSA+D  G P P  T   AK++DA+LLGA+GG KWD  E+ ++PE GLL+IR  L +FANLRPA + PQL D+S+LK E+  G+D+++VRELTGGIYFG+PRG    E+GE+ G+NT+VY+  E+ RIA+VAFE A  R
Sbjct:    5 ILILAGDGIGPEIVGAAEQVLTKVNEKFELGLTWEHGLLGGSAIDAHGEPYPAVTSEQAKKADAILLGAVGGPKWDTIERSIRPERGLLKIRSELNLFANLRPALLYPQLADASSLKPEIVAGLDILIVRELTGGIYFGQPRGIRELENGEKQGYNTDVYSESEIKRIAKVAFELAALR 183          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_AQUAE (3-isopropylmalate dehydrogenase OS=Aquifex aeolicus GN=leuB PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.766e-47
Identity = 95/183 (51.91%), Postives = 124/183 (67.76%), Query Frame = 1
Query:  124 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            K+Y I +L GDGIGPE++  A  VL   G + G+EF ++E  +GG A+D  G PLPEETL   K+SDA+LLGA+GG KWD      +PE GLL+IR+ L ++ANLRPA V   L+ SS LK+EV +G D++V+RELT GIY+G+PRG    E+G+    NT  Y   E+ RI R  FE ARKR
Sbjct:    2 KKYKIAVLKGDGIGPEIVEQALRVLDKIGEIYGVEFEYREGLIGGEAIDKTGDPLPEETLKICKESDAILLGAVGGPKWDNLPTDKRPEKGLLRIRKELDLYANLRPAKVWDALISSSPLKEEVVKGTDMIVIRELTSGIYYGEPRGI-FEENGKRYAINTMKYTEDEIRRIVRKGFEIARKR 183          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_THIDA (3-isopropylmalate dehydrogenase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=leuB PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 8.836e-47
Identity = 96/179 (53.63%), Postives = 129/179 (72.07%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            I +LPGDGIGPE+I+ A  VL+   S EG +   +  P+GG+  D  G PLPE TL  A+++DAVLLGA+GG ++D  ++ L+PE GLL+IR+ L +FANLRPA + P+L  +S+LK EV  G+DLM+VRELTG +YFG+PRG   T +GE +GFNT +Y+  EV R+A VAF  A KR
Sbjct:    3 IAVLPGDGIGPEIISQAVKVLEALKS-EGAKIEMETAPIGGAGYDAAGDPLPEATLKLAREADAVLLGAVGGPQYDTLDRPLRPERGLLRIRKELNLFANLRPALLYPELASASSLKPEVVSGLDLMIVRELTGDVYFGQPRGI-ETRNGERVGFNTMLYSESEVRRVAHVAFGIAMKR 179          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_SYNJB (3-isopropylmalate dehydrogenase OS=Synechococcus sp. GN=leuB PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 8.836e-47
Identity = 99/183 (54.10%), Postives = 121/183 (66.12%), Query Frame = 1
Query:  124 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            + Y IT L GDGIGPE++ V + VL       G    +QE  +GG+A D  G PLP ETL  A++SDAV L A+G +K+D      +PE  LL +R GL +FANLRP  V PQLV +S+LK EV  G+DL+VVRELTGGIYFG+P+G      G   G NT VY+  EVDRIARVAFE ARKR
Sbjct:    9 RTYRITALAGDGIGPEIMRVGRAVLDAVARQMGFALQWQEGLIGGAAYDQTGDPLPAETLKMAQESDAVYLAAVGDFKYDALPPEKRPERALLGLRAGLGLFANLRPVKVFPQLVGASSLKPEVIAGIDLVVVRELTGGIYFGQPKGIFTDAQGSRRGVNTMVYSEAEVDRIARVAFELARKR 191          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_GEOKA (3-isopropylmalate dehydrogenase OS=Geobacillus kaustophilus GN=leuB PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 8.836e-47
Identity = 98/181 (54.14%), Postives = 124/181 (68.51%), Query Frame = 1
Query:  130 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            Y I +LPGDGIG EV + A  VLK  G   G EF F+   +GG+A+D  G PLPEETL   ++SDAVLLGA+GG KWD N  HL+PE GLL IR+ L ++ANLRP      LV +S LK ++ +GVD ++VRELTGGIYFG+P G  V E+GEE   +T +Y   E++RI R+AF  AR R
Sbjct:    4 YRIAVLPGDGIGKEVTSGAVEVLKAVGIRFGHEFTFEYGLIGGAAIDEAGTPLPEETLRLCRESDAVLLGAVGGPKWDDNPPHLRPEKGLLAIRKQLDLYANLRPVVCYDSLVSASPLKPDLVQGVDFVIVRELTGGIYFGQPSG-RVVENGEEKAVDTLLYKKEEIERIVRMAFILARGR 183          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_THET8 (3-isopropylmalate dehydrogenase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=leuB PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.154e-46
Identity = 93/179 (51.96%), Postives = 123/179 (68.72%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            + +LPGDGIGPEV   A  VL+     EG+  A++  P GG+A+D  G P PE T    ++++AVLLG++GG KWD   + ++PETGLL +R+   +FANLRPA V P L   S LK+E+A GVD+++VRELTGGIYFG+PRG    E      +NTE Y+  EV+R+ARVAFE ARKR
Sbjct:    3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVEEAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMSEAE-----AWNTERYSKPEVERVARVAFEAARKR 176          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_THET2 (3-isopropylmalate dehydrogenase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=leuB PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.154e-46
Identity = 93/179 (51.96%), Postives = 123/179 (68.72%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            + +LPGDGIGPEV   A  VL+     EG+  A++  P GG+A+D  G P PE T    ++++AVLLG++GG KWD   + ++PETGLL +R+   +FANLRPA V P L   S LK+E+A GVD+++VRELTGGIYFG+PRG    E      +NTE Y+  EV+R+ARVAFE ARKR
Sbjct:    3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVEEAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMSEAE-----AWNTERYSKPEVERVARVAFEAARKR 176          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_SYNJA (3-isopropylmalate dehydrogenase OS=Synechococcus sp. (strain JA-3-3Ab) GN=leuB PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.154e-46
Identity = 96/183 (52.46%), Postives = 122/183 (66.67%), Query Frame = 1
Query:  124 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            + Y IT L GDGIGPE++ V + VL    +  G    +QE  +GG+A +  G PLP ETL  A++SDAV L A+G +K+D   +  +PE  LL +R GL +FANLRP  + PQLV +S+LK EV  G+DL+VVRELTGGIYFG+P+G      G   G NT  Y+  EVDRIARVAFE ARKR
Sbjct:    9 RTYRITALAGDGIGPEIMQVGRAVLDAVAAQVGFSLQWQEGLIGGAAYEATGDPLPPETLKMAQESDAVYLAAVGDFKYDTLPREKRPERALLGLRAGLGLFANLRPVKIFPQLVQASSLKPEVVAGIDLVVVRELTGGIYFGQPKGIFTDAKGSRRGVNTMAYSEAEVDRIARVAFELARKR 191          
The following BLAST results are available for this feature:
BLAST of DN621538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 292
Match NameE-valueIdentityDescription
LEU3_MAGSA3.037e-4754.193-isopropylmalate dehydrogenase OS=Magnetospirillu... [more]
LEU3_CHRVO3.037e-4754.193-isopropylmalate dehydrogenase OS=Chromobacterium... [more]
LEU3_ACIAD3.966e-4751.403-isopropylmalate dehydrogenase OS=Acinetobacter s... [more]
LEU3_AQUAE6.766e-4751.913-isopropylmalate dehydrogenase OS=Aquifex aeolicu... [more]
LEU3_THIDA8.836e-4753.633-isopropylmalate dehydrogenase OS=Thiobacillus de... [more]
LEU3_SYNJB8.836e-4754.103-isopropylmalate dehydrogenase OS=Synechococcus s... [more]
LEU3_GEOKA8.836e-4754.143-isopropylmalate dehydrogenase OS=Geobacillus kau... [more]
LEU3_THET81.154e-4651.963-isopropylmalate dehydrogenase OS=Thermus thermop... [more]
LEU3_THET21.154e-4651.963-isopropylmalate dehydrogenase OS=Thermus thermop... [more]
LEU3_SYNJA1.154e-4652.463-isopropylmalate dehydrogenase OS=Synechococcus s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06N15_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621538 ID=DN621538; Name=DN621538; organism=Citrus sinensis; type=EST; length=674bp
GCGGCGTCAGTGCAGCTGAATGCGAAGCTACTTGGACCCGCGTTTATTGT
TAAACCCGCAACCAAACACTTTCTTAAACCGGCAAGAATCAGGTGCGCCG
CTGCTGCCACCGCACCACCCACCAAACGGTACAGCATCACTCTACTCCCC
GGCGATGGCATCGGCCCCGAAGTCATCGCCGTCGCCAAAAACGTCCTCAA
GCTCGCTGGCTCTCTCGAAGGGATTGAATTTGCATTCCAAGAGATGCCAA
TGGGGGGATCAGCCTTGGATTTGGTTGGAGTTCCGTTACCTGAGGAGACA
CTTGCAGCAGCGAAGCAATCTGATGCAGTTCTACTTGGCGCAATTGGAGG
GTATAAATGGGATAAAAATGAGAAACATTTGAAGCCAGAGACTGGATTGC
TTCAGATTCGAGAAGGTCTTAAAGTCTTTGCAAATTTGAGGCCAGCAACT
GTTTTACCACAGTTAGTGGACTCTTCCACTTTGAAGAAGGAGGTTGCTGA
AGGTGTTGACCTTATGGTTGTAAGGGAGCTCACCGGAGGTATTTATTTTG
GAAAGCCCAGGGGCTATGGTGTTACTGAACATGGTGAGGAGATTGGCTTC
AATACAGAGGTTTATGCTGCCTACGAGGTGGATCGTATTGCTCGTGTTGC
TTTTGAGACTGCTCGGAAACGTCA
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