DN621538

Overview
NameDN621538
Unique NameDN621538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_PELUB (3-isopropylmalate dehydrogenase OS=Pelagibacter ubique GN=leuB PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.507e-46
Identity = 95/183 (51.91%), Postives = 122/183 (66.67%), Query Frame = 1
Query:  124 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            K+  I LLPGDGIGPEVI   K V+    S + ++F   E   GG + D  G P+ +E    A +S+ V+LGA+GG KWD  E   KPE  LL++R+ LK+FANLRPA    QLVD+STLK E+  G+D+M+VRELTGGIYFG+PRG    E+GE  G NT  Y   E+ R+A+VAF+ ARKR
Sbjct:    5 KKRKILLLPGDGIGPEVIQEVKKVILWLNSNKSLDFEIDEDLAGGCSYDKHGTPITDEVFYKALESEFVMLGAVGGPKWDNLEFSKKPERALLKLRKELKLFANLRPAICFEQLVDASTLKPEIVSGLDIMIVRELTGGIYFGEPRGIKPIENGERKGINTHSYTTSEIVRVAKVAFDLARKR 187          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_BACCA (3-isopropylmalate dehydrogenase OS=Bacillus caldotenax GN=leuB PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.507e-46
Identity = 97/181 (53.59%), Postives = 123/181 (67.96%), Query Frame = 1
Query:  130 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            Y I +LPGDGIG EV + A  VLK  G   G EF F+   +GG+A+D  G PLPEET+   ++SDAVLLGA+GG KWD N  HL+PE GLL IR+ L ++ANLRP      LV  S LK ++ +GVD ++VRELTGGIYFG+P    V E+GEE   +T +Y   E++RI R+AFE AR R
Sbjct:    4 YRIAVLPGDGIGKEVTSGAVEVLKAVGIRFGHEFTFEYGLIGGAAIDEAGTPLPEETVRLCRESDAVLLGAVGGPKWDDNPPHLRPEKGLLAIRKQLDLYANLRPVVCYDSLVSRSPLKPDLVQGVDFVIVRELTGGIYFGQPS--AVVENGEEKAVDTLLYKKEEIERIVRMAFELARGR 182          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_THETH (3-isopropylmalate dehydrogenase OS=Thermus thermophilus GN=leuB PE=1 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 1.968e-46
Identity = 93/179 (51.96%), Postives = 122/179 (68.16%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            + +LPGDGIGPEV   A  VL+     EG+  A++  P GG+A+D  G P PE T    ++++AVLLG++GG KWD   + + PETGLL +R+   +FANLRPA V P L   S LK+E+A GVD+++VRELTGGIYFG+PRG    E      +NTE Y+  EV+R+ARVAFE ARKR
Sbjct:    3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVEEAEAVLLGSVGGPKWDGLPRKISPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMSEAE-----AWNTERYSKPEVERVARVAFEAARKR 176          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_PSYA2 (3-isopropylmalate dehydrogenase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=leuB PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.968e-46
Identity = 93/180 (51.67%), Postives = 127/180 (70.56%), Query Frame = 1
Query:  133 SITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            +I  L GDGIGPE++  A +VL    +   +    +   +GG A+D  G PLPEETL  A+ +DAVLLGA+GG KWD  E+  +PE GLL+IR  L +FANLR A + PQLV++S++K E+  G+DL++VRELTGGIYFG+PRG    E+GE+ G+NT VY+  E++RI +VAFE A+ R
Sbjct:    3 TILTLAGDGIGPEIMTQAIDVLNAVNNKFALGLTLESGLIGGVAVDATGEPLPEETLQRARAADAVLLGAVGGPKWDGIERSKRPERGLLKIRSELGLFANLRVAKLYPQLVNASSIKPEIISGLDLLIVRELTGGIYFGEPRGIRTLENGEQQGYNTMVYSTSEINRIGKVAFELAQTR 182          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_PSYCK (3-isopropylmalate dehydrogenase OS=Psychrobacter cryohalolentis (strain K5) GN=leuB PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.358e-46
Identity = 93/180 (51.67%), Postives = 126/180 (70.00%), Query Frame = 1
Query:  133 SITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            +I  L GDGIGPE++  A +VL        +    +   +GG A+D  G PLPEETL  A+ +DAVLLGA+GG KWD  E+  +PE GLL+IR  L +FANLR A + PQLV++S++K E+  G+DL++VRELTGGIYFG+PRG    E+GE+ G+NT VY+  E++RI +VAFE A+ R
Sbjct:    3 TILTLAGDGIGPEIMTQAIDVLNAVNDKFALGLTLESGLIGGVAVDSTGEPLPEETLQRARAADAVLLGAVGGPKWDGIERSKRPERGLLKIRSELGLFANLRVAKLYPQLVNASSIKPEIISGLDLLIVRELTGGIYFGEPRGIRTLENGEQQGYNTMVYSTSEINRIGKVAFELAQTR 182          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_PSEU2 (3-isopropylmalate dehydrogenase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=leuB PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.358e-46
Identity = 93/179 (51.96%), Postives = 125/179 (69.83%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            I +LPGDGIGPE++  A  VL+LA     + F      +GG+A+D  GVPL +ETL  A+ +DAVLLGA+GG KWD  E+ ++PE GLL+IR  L +F NLRPA + PQL D+S+LK E+  G+D+M+VRELTGGIYFG PRG  V ++GE   ++T  Y+  E+ RIA+V F+ A  R
Sbjct:    5 ILILPGDGIGPEIMTEAVKVLELANEKYQLGFELTHDVIGGAAIDKHGVPLADETLERARAADAVLLGAVGGPKWDTIERDIRPERGLLKIRSQLGLFGNLRPAILYPQLADASSLKPEIVAGLDIMIVRELTGGIYFGAPRGTRVLDNGERQAYDTLPYSESEIRRIAKVGFDMAMVR 183          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_XANC5 (3-isopropylmalate dehydrogenase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=leuB PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.385e-46
Identity = 94/179 (52.51%), Postives = 124/179 (69.27%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            I +LPGDGIGPE++A A  VLK   +  G+ F      +GG+A D  G PL +ETL  A+ +DAVLLGA+GG +WD  +  L+PE GLL+IR  L +FANLRPA + PQL D+STLK EV  G+DL+++RELTGGIYFG+PRG    ++GE   ++T  Y+  E+ RIA+  FE AR R
Sbjct:    5 ILILPGDGIGPEIMAEAVKVLKRIDAQHGLGFELVYDELGGAAYDKYGSPLADETLERARAADAVLLGAVGGPQWDTIDPSLRPERGLLKIRSQLGLFANLRPALLYPQLADASTLKPEVVAGLDLLILRELTGGIYFGQPRGNRTLDNGERQAYDTLPYSESEIRRIAKAGFEMARLR 183          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_BACLD (3-isopropylmalate dehydrogenase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=leuB PE=3 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 4.385e-46
Identity = 95/179 (53.07%), Postives = 121/179 (67.60%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            I LLPGDGIGPEV+  A +VLK        EF F+   +GG+A+D  G PLPEET+AA K +DA+LLGA+GG KWD+N   L+PE GLL IR+ L +FANLRP  V   L  +S LK E  EGVD ++VRELTGG+YFGKP    V ++GEE   +T  Y   E++R+ R AF+ A+ R
Sbjct:    5 IALLPGDGIGPEVLDAAVDVLKSVAEHYQHEFEFEYGLIGGAAIDEAGAPLPEETVAACKAADAILLGAVGGPKWDQNPSELRPEKGLLAIRKQLDLFANLRPVKVFESLAGASPLKTEYIEGVDFVIVRELTGGLYFGKPSEQYVNQNGEEEAVDTLFYKKSEMERVIREAFQMAQSR 183          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_PSESM (3-isopropylmalate dehydrogenase OS=Pseudomonas syringae pv. tomato GN=leuB PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.769e-46
Identity = 92/179 (51.40%), Postives = 125/179 (69.83%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            I +LPGDGIGPE++  A  VL+LA     + F      +GG+A+D  GVPL +ETL  A+ +DAVLLGA+GG KWD  E+ ++PE GLL+IR  L +F NLRPA + PQL D+S+LK E+  G+D+++VRELTGGIYFG PRG  V ++GE   ++T  Y+  E+ RIA+V F+ A  R
Sbjct:    5 ILILPGDGIGPEIMTEAVKVLELANQKYQLGFELTHDVIGGAAIDKHGVPLADETLDRARAADAVLLGAVGGPKWDTIERDIRPERGLLKIRSQLGLFGNLRPAILYPQLADASSLKPEIVAGLDILIVRELTGGIYFGAPRGTRVLDNGERQAYDTLPYSESEIRRIAKVGFDMAMVR 183          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_PSE14 (3-isopropylmalate dehydrogenase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=leuB PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.769e-46
Identity = 92/179 (51.40%), Postives = 125/179 (69.83%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            I +LPGDGIGPE++  A  VL+LA     + F      +GG+A+D  GVPL +ETL  A+ +DAVLLGA+GG KWD  E+ ++PE GLL+IR  L +F NLRPA + PQL D+S+LK E+  G+D+++VRELTGGIYFG PRG  V ++GE   ++T  Y+  E+ RIA+V F+ A  R
Sbjct:    5 ILILPGDGIGPEIMTEAVKVLELANEKYQLGFELTHDVIGGAAIDKHGVPLADETLDRARAADAVLLGAVGGPKWDTIERDIRPERGLLKIRSQLGLFGNLRPAILYPQLADASSLKPEIVAGLDILIVRELTGGIYFGAPRGTRVLDNGERQAYDTLPYSESEIRRIAKVGFDMAMVR 183          
The following BLAST results are available for this feature:
BLAST of DN621538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 292
Match NameE-valueIdentityDescription
LEU3_PELUB1.507e-4651.913-isopropylmalate dehydrogenase OS=Pelagibacter ub... [more]
LEU3_BACCA1.507e-4653.593-isopropylmalate dehydrogenase OS=Bacillus caldot... [more]
LEU3_THETH1.968e-4651.963-isopropylmalate dehydrogenase OS=Thermus thermop... [more]
LEU3_PSYA21.968e-4651.673-isopropylmalate dehydrogenase OS=Psychrobacter a... [more]
LEU3_PSYCK3.358e-4651.673-isopropylmalate dehydrogenase OS=Psychrobacter c... [more]
LEU3_PSEU23.358e-4651.963-isopropylmalate dehydrogenase OS=Pseudomonas syr... [more]
LEU3_XANC54.385e-4652.513-isopropylmalate dehydrogenase OS=Xanthomonas cam... [more]
LEU3_BACLD4.385e-4653.073-isopropylmalate dehydrogenase OS=Bacillus lichen... [more]
LEU3_PSESM9.769e-4651.403-isopropylmalate dehydrogenase OS=Pseudomonas syr... [more]
LEU3_PSE149.769e-4651.403-isopropylmalate dehydrogenase OS=Pseudomonas syr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06N15_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621538 ID=DN621538; Name=DN621538; organism=Citrus sinensis; type=EST; length=674bp
GCGGCGTCAGTGCAGCTGAATGCGAAGCTACTTGGACCCGCGTTTATTGT
TAAACCCGCAACCAAACACTTTCTTAAACCGGCAAGAATCAGGTGCGCCG
CTGCTGCCACCGCACCACCCACCAAACGGTACAGCATCACTCTACTCCCC
GGCGATGGCATCGGCCCCGAAGTCATCGCCGTCGCCAAAAACGTCCTCAA
GCTCGCTGGCTCTCTCGAAGGGATTGAATTTGCATTCCAAGAGATGCCAA
TGGGGGGATCAGCCTTGGATTTGGTTGGAGTTCCGTTACCTGAGGAGACA
CTTGCAGCAGCGAAGCAATCTGATGCAGTTCTACTTGGCGCAATTGGAGG
GTATAAATGGGATAAAAATGAGAAACATTTGAAGCCAGAGACTGGATTGC
TTCAGATTCGAGAAGGTCTTAAAGTCTTTGCAAATTTGAGGCCAGCAACT
GTTTTACCACAGTTAGTGGACTCTTCCACTTTGAAGAAGGAGGTTGCTGA
AGGTGTTGACCTTATGGTTGTAAGGGAGCTCACCGGAGGTATTTATTTTG
GAAAGCCCAGGGGCTATGGTGTTACTGAACATGGTGAGGAGATTGGCTTC
AATACAGAGGTTTATGCTGCCTACGAGGTGGATCGTATTGCTCGTGTTGC
TTTTGAGACTGCTCGGAAACGTCA
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